Sophie Arnaud-Haond
Laboratoire Environnement Profond
Tél : 02 98 22 43 05
Fax : 02 98 22 47 57
Adresse postale : Ifremer - Centre Bretagne- BP 70 - 29280 Plouzané
Domaines de recherche
Ecologie Evolutive en Environnement Marin:
Dispersion et barrières au flux génique en environnement marin : implications pour la conservation de la biodiversité et influence sur l'évolution des organismes marins.
Conservation des espèces et des habitats en déclin : impacts des activités anthropiques sur la trajectoire évolutive des populations et des espèces.
Génétique des Populations et Théorie de l'Evolution:
Influence du système reproducteur sur l'écologie et l'évolution des populations et des espèces, implication spécifiques de la clonalité.
Analyses des métapopulations ou des communautés comme des systèmes complexes, adaptation de la théorie des réseaux en écologie et en évolution.
Application des résultats scientifiques à la Gestion et à la Conservation de l’environnement et des Ressources Génétiques Marines
Bibliographie
2012
Aires Tania, Marba Nuria, Serrao Ester A., Duarte Carlos M., Arnaud-Haond Sophie (2012). Selective elimination of chloroplastidial DNA for metagenomics of bacteria associated with the green alga Caulerpa Taxifolia (bryopsidophyceae). Journal Of Phycology, 48(2), 483-490. Publisher's official version : http://dx.doi.org/10.1111/j.1529-8817.2012.01124.x , Open Access version : http://archimer.ifremer.fr/doc/00076/18739/
Teixeira Sara, Serrao Ester A., Arnaud-Haond Sophie (2012). Characterization of 15 polymorphic microsatellite loci in Rimicaris exoculata, and cross-amplification in other hydrothermal-vent shrimp. Conservation Genetics Resources, 4(1), 81-84. http://dx.doi.org/10.1007/s12686-011-9479-3
Arnaud-Haond Sophie, Duarte Carlos M., Diaz-Almela Elena, Marba Nuria, Sintes Tomas, Serrao Ester A. (2012). Implications of Extreme Life Span in Clonal Organisms: Millenary Clones in Meadows of the Threatened Seagrass Posidonia oceanica. Plos One, 7(2), -. Publisher's official version : http://dx.doi.org/10.1371/journal.pone.0030454 , Open Access version : http://archimer.ifremer.fr/doc/00076/18710/
Moalic Yann, Desbruyeres Daniel, Duarte Carlos M., Rozenfeld Alejandro F., Bachraty Charleyne, Arnaud Haond Sophie (2012). Biogeography Revisited with Network Theory: Retracing the History of Hydrothermal Vent Communities. Systematic Biology, 61(1), 127-137. http://dx.doi.org/10.1093/sysbio/syr088
Decker Carole, Olu Karine, Cunha Regina L., Arnaud-Haond Sophie (2012). Phylogeny and Diversification Patterns among Vesicomyid Bivalves. PLoS ONE, 7(4), e33359. Publisher's official version : http://dx.doi.org/10.1371/journal.pone.0033359 , Open Access version : http://archimer.ifremer.fr/doc/00076/18729/
2011
Chenault Nicolas, Arnaud-Haond Sophie, Juteau Mary, Valade Romain, Almeida Jose-Luis, Villar Marc, Bastien Catherine, Dowkiw Arnaud (2011). SSR-based analysis of clonality, spatial genetic structure and introgression from the Lombardy poplar into a natural population of Populus nigra L. along the Loire River. Tree Genetics & Genomes, 7(6), 1249-1262. http://dx.doi.org/10.1007/s11295-011-0410-6
Massa Sonia I., Pearson Gareth A., Aires Tania, Kube Michael, Olsen Jeanine L., Reinhardt Richard, Serrao Ester A., Arnaud Haond Sophie (2011). Expressed sequence tags from heat-shocked seagrass Zostera noltii (Hornemann) from its southern distribution range. Marine Genomics, 4(3), 181-188. Publisher's official version : http://dx.doi.org/10.1016/j.margen.2011.04.003 , Open Access version : http://archimer.ifremer.fr/doc/00044/15559/
Cunha Regina L., Blanc Francoise, Bonhomme Francois, Arnaud-Haond Sophie (2011). Evolutionary Patterns in Pearl Oysters of the Genus Pinctada (Bivalvia: Pteriidae). Marine Biotechnology, 13(2), 181-192. Publisher's official version : http://dx.doi.org/10.1007/s10126-010-9278-y , Open Access version : http://archimer.ifremer.fr/doc/00035/14635/
Arnaud Haond Sophie, Arrieta Jesus M., Duarte Carlos M. (2011). Marine Biodiversity and Gene Patents. Science, 331(6024), 1521-1522. http://dx.doi.org/10.1126/science.1200783
Teixeira Sara, Cambon-Bonavita Marie-Anne, Serrao Ester A., Desbruyeres Daniel, Arnaud-Haond Sophie (2011). Recent population expansion and connectivity in the hydrothermal shrimp Rimicaris exoculata along the Mid-Atlantic Ridge. Journal Of Biogeography, 38(3), 564-574. Publisher's official version : http://dx.doi.org/10.1111/j.1365-2699.2010.02408.x , Open Access version : http://archimer.ifremer.fr/doc/00033/14394/
Moalic Yann, Arnaud-Haond Sophie, Perrin Cecile, Pearson Gareth A., Serrao Ester A. (2011). Travelling in time with networks: Revealing present day hybridization versus ancestral polymorphism between two species of brown algae, Fucus vesiculosus and F. spiralis. Bmc Evolutionary Biology, 11, 1-13. Publisher's official version : http://dx.doi.org/10.1186/1471-2148-11-33 , Open Access version : http://archimer.ifremer.fr/doc/00035/14600/
Aires Tania, Marba Nuria, Cunha Regina L., Kendrick Gary A., Walker Diana I., Serrao Ester A., Duarte Carlos M., Arnaud Haond Sophie (2011). Evolutionary history of the seagrass genus Posidonia. Marine Ecology-progress Series, 421, 117-130. http://dx.doi.org/10.3354/meps08879
2010
Arrieta Jesus M., Arnaud-Haond Sophie, Duarte Carlos M. (2010). What lies underneath: Conserving the oceans' genetic resources. Proceedings Of The National Academy Of Sciences Of The United States Of America, 107(43), 18318-18324. Publisher's official version : http://dx.doi.org/10.1073/pnas.0911897107 , Open Access version : http://archimer.ifremer.fr/doc/00018/12897/
Arnaud Haond Sophie, Marba Nuria, Diaz-Almela Elena, Serrao Ester A., Duarte Carlos M. (2010). Comparative Analysis of Stability-Genetic Diversity in Seagrass (Posidonia oceanica) Meadows Yields Unexpected Results. Estuaries And Coasts, 33(4), 878-889. Publisher's official version : http://dx.doi.org/10.1007/s12237-009-9238-9 , Open Access version : http://archimer.ifremer.fr/doc/00006/11693/
Becheler Ronan, Diekmann O., Hily Christian, Moalic Yann, Arnaud-Haond S. (2010). The concept of population in clonal organisms: mosaics of temporally colonized patches are forming highly diverse meadows of Zostera marina in Brittany. Molecular Ecology, 19(12), 2394-2407. Publisher's official version : http://dx.doi.org/10.1111/j.1365-294X.2010.04649.x , Open Access version : http://archimer.ifremer.fr/doc/00006/11690/
Serra I. A., Innocenti A. M., Di Maida G., Calvo S., Migliaccio M., Zambianchi E., Pizzigalli C., Arnaud-Haond Sophie, Duarte C. M., Serrao E. A., Procaccini G. (2010). Genetic structure in the Mediterranean seagrass Posidonia oceanica: disentangling past vicariance events from contemporary patterns of gene flow. Molecular Ecology, 19(3), 557-568. http://dx.doi.org/10.1111/j.1365-294X.2009.04462.x
2009
Arnaud-Haond Sophie, Duarte Carlos M., Teixeira Sara, Massa Sonia Isabel, Terrados Jorge, Nguyen Hong Tri, Phan Nguyen Hong, Serrao Ester A. (2009). Genetic recolonization of mangrove: genetic diversity still increasing in the Mekong Delta 30 years after Agent Orange. Marine Ecology Progress Series, 390, 129-135. http://dx.doi.org/10.3354/meps08183
Massa S. I., Arnaud-Haond Sophie, Pearson G. A., Serrao E. A. (2009). Temperature tolerance and survival of intertidal populations of the seagrass Zostera noltii (Hornemann) in Southern Europe (Ria Formosa, Portugal). Hydrobiologia, 619, 195-201. http://dx.doi.org/10.1007/s10750-008-9609-4
2008
Rozenfeld Alejandro F., Arnaud-Haond-s Sophie, Hernandez-Garcia Emilio, Eguiluz Victor M., Serrao Ester A., Duarte Carlos M. (2008). Network analysis identifies weak and strong links in a metapopulation system. Proceedings Of The National Academy Of Sciences Of The United States Of America, 105(48), 18824-18829. http://dx.doi.org/10.1073/pnas.0805571105
Arnaud-Haond Sophie, Vonau Vincent, Rouxel Catherine, Bonhomme Francois, Prou Jean, Goyard Emmanuel, Boudry Pierre (2008). Genetic structure at different spatial scales in the pearl oyster (Pinctada margaritifera cumingii) in French Polynesian lagoons: beware of sampling strategy and genetic patchiness. Marine Biology, 155(2), 147-157. Publisher's official version : http://dx.doi.org/10.1007/s00227-008-1013-0 , Open Access version : http://archimer.ifremer.fr/doc/00000/4960/
Alberto Filipe, Massa Sonia, Manent Pablo, Diaz-Almela Elena, Arnaud-Haond Sophie, Duarte Carlos M., Serrao Ester A. (2008). Genetic differentiation and secondary contact zone in the seagrass Cymodocea nodosa across the Mediterranean-Atlantic transition region. Journal Of Biogeography, 35(7), 1279-1294. http://dx.doi.org/10.1111/j.1365-2699.2007.01876.x
2007
Diaz-Almela Elena, Arnaud-Haond Sophie, Vliet Mirjam S., Alvarez Elvira, Marba Nuria, Duarte Carlos M., Serrao Ester A. (2007). Feed-backs between genetic structure and perturbation-driven decline in seagrass (Posidonia oceanica) meadows. Conservation Genetics, 8(6), 1377-1391. http://dx.doi.org/10.1007/s10592-007-9288-0
Arnaud-Haond S., Duarte C. M., Alberto F., Serrao E. A. (2007). Standardizing methods to address clonality in population studies. Molecular Ecology, 16(24), 5115-5139. http://dx.doi.org/10.1111/j.1365-294X.2007.03535.x
Rozenfeld Alejandro F., Arnaud-Haond Sophie, Hernandez-Garcia Emilio, Eguiluz Victor M., Matias Manuel A., Serrao Ester, Duarte Carlos M. (2007). Spectrum of genetic diversity and networks of clonal organisms. Journal Of The Royal Society Interface, 4(17), 1093-1102. http://dx.doi.org/10.1098/rsif.2007.0230
Arnaud-Haond Sophie, Migliaccio Marianna, Diaz-Almela Elena, Teixeira Sara, Van De Vliet Mirjiam Susanne, Alberto Filipe, Procaccini Gabriele, Duarte Carlos M., Serrao Ester A. (2007). Vicariance patterns in the Mediterranean Sea: east-west cleavage and low dispersal in the endemic seagrass Posidonia oceanica. Journal Of Biogeography, 34(6), 963-976. http://dx.doi.org/10.1111/j.1365-2699.2006.01671.x
Arnaud-Haond Sophie (2007). Dispersion, modes reproducteurs et réseaux en environnement marin : là où il y a des gènes (Habilitation à Diriger des Recherches). HDR.
Arnaud-Haond Sophie, Belkhir Khalid (2007). GENCLONE: a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization. Molecular Ecology Notes, 7(1), 15-17. http://dx.doi.org/10.1111/j.1471-8286.2006.01522.x
Arnaud-Haond Sophie, Goyard Emmanuel, Vonau Vincent, Herbaut C, Prou Jean, Saulnier Denis (2007). Pearl formation: Persistence of the graft during the entire process of biomineralization. Marine Biotechnology, 9(1), 113-116. Publisher's official version : http://dx.doi.org/10.1007/s10126-006-6033-5 , Open Access version : http://archimer.ifremer.fr/doc/00000/2456/
2006
Hernandez-Garcia E., Rozenfeld A. F., Eguiluz V. M., Arnaud-Haond S., Duarte C. M. (2006). Clone size distributions in networks of genetic similarity. Physica D-nonlinear Phenomena, 224(1-2), 166-173. http://dx.doi.org/10.1016/j.physd.2006.09.015
Arnaud-Haond S., Teixeira Sara, Massa S. I., Billot C., Saenger P., Coupland G., Duarte C. M., Serrao E. A. (2006). Genetic structure at range edge: low diversity and high inbreeding in Southeast Asian mangrove (Avicennia marina) populations. Molecular Ecology, 15(12), 3515-3525. http://dx.doi.org/10.1111/j.1365-294X.2006.02997.x
Alberto F, Arnaud-Haond S, Duarte Cm, Serrao Ea (2006). Genetic diversity of a clonal angiosperm near its range limit: the case of Cymodocea nodosa at the Canary Islands. Marine Ecology-progress Series, 309, 117-129. http://dx.doi.org/10.3354/meps309117
2005
Alberto F, Gouveia L, Arnaud-Haond S, Perez-Llorens Jl, Duarte Cm, Serrao Ea (2005). Within-population spatial genetic structure, neighbourhood size and clonal subrange in the seagrass Cymodocea nodosa. Molecular Ecology, 14(9), 2669-2681. http://dx.doi.org/10.1111/j.1365-294X.2005.02640.x
Arnaud-Haond S, Alberto F, Teixeira Sara, Procaccini G, Serrao Ea, Duarte Cm (2005). Assessing genetic diversity in clonal organisms: Low diversity or low resolution? Combining power and cost efficiency in selecting markers. Journal Of Heredity, 96(4), 434-440. http://dx.doi.org/10.1093/jhered/esi043
Arnaud-Haond S, Blanc Frederique, Bonhomme E, Monteforte M (2005). Recent foundation of Mexican populations of pearl oysters (Pteria sterna) revealed by lack of genetic variation on two mitochondrial genes. Journal Of The Marine Biological Association Of The United Kingdom, 85(2), 363-366. http://dx.doi.org/10.1017/S0025315405011288h
Arnaud-Haond Sophie, Goyard Emmanuel, Prou Jean, Vonau Vincent, Bonhomme Francois, Boudry Pierre (2005). Gestion des ressources génétiques de l'huître perlière Pinctada margaritifera de Polynésie française : caractérisation génétique des populations et optimisation du recrutement pour l'exploitation perlière. Les Actes du BRG, 5, 215-229. Open Access version : http://archimer.ifremer.fr/doc/00000/3822/
2004
Arnaud Haond Sophie, Vonau Vincent, Bonhomme Francois, Boudry Pierre, Blanc F., Prou Jean, Seaman Terii, Goyard Emmanuel (2004). Spatio-temporal variation in the genetic composition of wild populations of pearl oyster (Pinctada margaritifera cumingii) in French Polynesia following 10 years of juvenile translocation. Molecular Ecology, 13(7), 2001-2007. http://dx.doi.org/10.1111/j.1365-294X.2004.02188.x
2003
Goyard Emmanuel, Arnaud-Haond Sophie, Vonau Vincent, Bishoff Vincent, Mouchel Olivier, Pham Dominique, Wyban Jim, Boudry Pierre (2003). Residual genetic variability in domesticated populations of the Pacific blue shrimp (Litopenaeus stylirostris) of New Caledonia, French Polynesia and Hawaii and some management recommendations. Aquatic Living Resources, 16(6), 501-508. Publisher's official version : http://dx.doi.org/10.1016/j.aquliv.2003.07.001 , Open Access version : http://archimer.ifremer.fr/doc/00000/596/
Teixeira Sara, Arnaud-Haond S, Duarte Cm, Serrao E (2003). Polymorphic microsatellite DNA markers in the mangrove tree Avicennia alba. Molecular Ecology Notes, 3(4), 544-546. http://dx.doi.org/10.1046/j.1471-8286.2003.00505.x
Arnaud-Haond S, Monteforte M, Blanc F, Bonhomme Francois (2003). Evidence for male-biased effective sex ratio and recent step-by-step colonization in the bivalve Pinctada mazatlanica. Journal Of Evolutionary Biology, 16(5), 790-796. http://dx.doi.org/10.1046/j.1420-9101.2003.00603.x
Alberto F, Correia L, Arnaud-Haond S, Billot C, Duarte Cm, Serrao E (2003). New microsatellite markers for the endemic Mediterranean seagrass Posidonia oceanica. Molecular Ecology Notes, 3(2), 253-255. http://dx.doi.org/10.1046/j.1471-8286.2003.00415.x
Arnaud-Haond S, Bonhomme Francois, Blanc Frederique (2003). Large discrepancies in differentiation of allozymes, nuclear and mitochondrial DNA loci in recently founded Pacific populations of the pearl oyster Pinctada margaritifera. Journal Of Evolutionary Biology, 16(3), 388-398. http://dx.doi.org/10.1046/j.1420-9101.2003.00549.x
Arnaud Haond Sophie, Vonau Vincent, Bonhomme Francois, Boudry Pierre, Prou Jean, Seaman Terii, Veyret Melanie, Goyard Emmanuel (2003). Spat collection of the pearl oyster (Pinctada margaritifera cumingii) in French Polynesia: an evaluation of the potential impact on genetic variability of wild and farmed populations after 20 years of commercial exploitation. Aquaculture, 219(1-4), 181-192. http://dx.doi.org/10.1016/S0044-8486(02)00568-9
2002
Arnaud-Haond S, Boudry Pierre, Saulnier Denis, Seaman T, Bonhomme F, Goyard Emmanuel (2002). New anonymous nuclear DNA markers for the pearl oyster Pinctada margaritifera and other Pinctada species. Molecular Ecology Notes, 2(3), 220-222.
2000
Arnaud Sophie, Monteforte Mario, Galtier Nicolas, Bonhomme Francois, Blanc Francoise (2000). Population structure and genetic variability of pearl oyster Pinctada mazatlanica along Pacific coasts from Mexico to Panama. Conservation Genetics, 1, 299-307.
1999
Arnaud Sophie, Bonhomme Francois, Borsa P (1999). Mitochondrial DNA analysis of the genetic relationships among populations of scad mackerel (Decapterus macarellus, D-macrosoma, and D-russelli) in South-East Asia. Marine Biology, 135(4), 699-707. http://dx.doi.org/10.1007/s002270050671