Articles

Fettweis Michael, Riethmuller Rolf, Verney Romaric, Becker Marius, Backers Joan, Baeye Matthias, Chapalain Marion, Claeys Styn, Claus Jan, Cox Tom, Deloffre Julien, Depreiter Davy, Druine Flavie, Floser Gotz, Grunler Steffen, Jourdin Frederic, Lafite Robert, Nauw Janine, Nechad Bouchra, Rottgers Rudiger, Sottolichio Aldo, Van Engeland Tom, Vanhaverbeke Wim, Vereecken Hans Uncertainties associated with in situ high-frequency long-term observations of suspended particulate matter concentration using optical and acoustic sensors. Progress in Oceanography IN PRESS. https://doi.org/10.1016/j.pocean.2019.102162
Tibiricá Carlos Eduardo J. A., Leite Isabel P., Batista Talita V. V., Fernandes Luciano F., Chomerat Nicolas, Herve Fabienne, Hess Philipp, Mafra Luiz (2019). Ostreopsis cf. ovata Bloom in Currais, Brazil: Phylogeny, Toxin Profile and Contamination of Mussels and Marine Plastic Litter. Toxins, 11(8), 446 (22p.). Publisher's official version : https://doi.org/10.3390/toxins11080446 , Open Access version : https://archimer.ifremer.fr/doc/00509/62037/
Bojadzija Savic Gorenka, Edwards Christine, Briand Enora, Lawton Linda, Wiegand Claudia, Bormans Myriam (2019). Daphnia magna Exudates Impact Physiological and Metabolic Changes in Microcystis aeruginosa. Toxins, 11(7), 421 (20p.). Publisher's official version : https://doi.org/10.3390/toxins11070421 , Open Access version : https://archimer.ifremer.fr/doc/00507/61893/
Proenca Barbara, Romuald Marine, Auby Isabelle, Ganthy Florian, Sottolichio Aldo, Michalet Richard (2019). Disentangling ecosystem engineering from short-term biotic effects of a strong invader on a native foundation species. Marine Ecology Progress Series, 621, 69-81. https://doi.org/10.3354/meps12999
Bormans Myriam, Amzil Zouher, Mineaud Emilien, Brient Luc, Savar Veronique, Robert Elise, Lance Emilie (2019). Demonstrated transfer of cyanobacteria and cyanotoxins along a freshwater-marine continuum in France. Harmful Algae, 87, 101639 (11p.). https://doi.org/10.1016/j.hal.2019.101639
Martín Míguez Belen, Novellino Antonio, Vinci Matteo, Claus Simon, Calewaert Jan-Bart, Vallius Henry, Schmitt Thierry, Pititto Alessandro, Giorgetti Alessandra, Askew Natalie, Iona Sissy, Schaap Dick, Pinardi Nadia, Harpham Quillon, Kater Belinda J., Populus Jacques, She Jun, Palazov Atanas Vasilev, McMeel Oonagh, Oset Paula, Lear Dan, Manzella Giuseppe M. R., Gorringe Patrick, Simoncelli Simona, Larkin Kate, Holdsworth Neil, Arvanitidis Christos Dimitrios, Molina Jack Maria Eugenia, Chaves Montero Maria Del Mar, Herman Peter M. J., Hernandez Francisco (2019). The European Marine Observation and Data Network (EMODnet): Visions and Roles of the Gateway to Marine Data in Europe. Frontiers In Marine Science, 6(313), 24p. Publisher's official version : https://doi.org/10.3389/fmars.2019.00313 , Open Access version : https://archimer.ifremer.fr/doc/00506/61779/
Caruana Amandine, Ayache Nour, Raimbault Virginie, Retho Michael, Herve Fabienne, Bilien Gwenael, Amzil Zouher, Chomerat Nicolas Direct evidence for toxin production by Pseudo-nitzschia plurisecta (Bacillariophyceae) and extension of its distribution area. European Journal of Phycology IN PRESS. https://doi.org/10.1080/09670262.2019.1620342
Flores Hauke, David Carmen, Ehrlich Julia, Hardge Kristin, Kohlbach Doreen, Lange Benjamin A., Niehoff Barbara, Nothig Eva-Maria, Peeken Ilka, Metfies Katja (2019). Sea-ice properties and nutrient concentration as drivers of the taxonomic and trophic structure of high-Arctic protist and metazoan communities. Polar Biology, 42(7), 1377-1395. https://doi.org/10.1007/s00300-019-02526-z
Sauvey Aurore, Claquin Pascal, Le Roy Bertrand, Le Gac Mickael, Fauchot Juliette Differential influence of life cycle on growth and toxin production of three Pseudo-nitzschia species (Bacillariophyceae). Journal of Phycology IN PRESS. https://doi.org/10.1111/jpy.12898
Oleszczuk Barbara, Michaud Emma, Morata Nathalie, Renaud Paul E., Kędra Monika (2019). Benthic macrofaunal bioturbation activities from shelf to deep basin in spring to summer transition in the Arctic Ocean. Marine Environmental Research, 150, 104746 (16p.). https://doi.org/10.1016/j.marenvres.2019.06.008
Sanchez Frederic, Geffroy Solene, Norest Manon, Yau Sheree, Moreau Herve, Grimsley Nigel (2019). Simplified Transformation of Ostreococcus tauri Using Polyethylene Glycol. Genes, 10(5), 399 (16p.). Publisher's official version : https://doi.org/10.3390/genes10050399 , Open Access version : https://archimer.ifremer.fr/doc/00500/61170/
Mengual Baptiste, Le Hir Pierre, Cayocca Florence, Garlan T. (2019). Bottom trawling contribution to the spatio-temporal variability of sediment fluxes on the continental shelf of the Bay of Biscay (France). Marine Geology, 414, 77-91. https://doi.org/10.1016/j.margeo.2019.05.009
Pelin Marco, Kilcoyne Jane, Florio Chiara, Hess Philipp, Tubaro Aurelia, Sosa Silvio (2019). Azaspiracids Increase Mitochondrial Dehydrogenases Activity in Hepatocytes: Involvement of Potassium and Chloride Ions. Marine Drugs, 17(5), 276 (14p.). Publisher's official version : https://doi.org/10.3390/md17050276 , Open Access version : https://archimer.ifremer.fr/doc/00494/60526/
Benedetti Fabio, Jalabert Laetitia, Sourisseau Marc, Becker Beatriz, Cailliau Caroline, Desnos Corinne, Elineau Amanda, Irisson Jean-Olivier, Lombard Fabien, Picheral Marc, Stemmann Lars, Pouline Patrick (2019). The Seasonal and Inter-Annual Fluctuations of Plankton Abundance and Community Structure in a North Atlantic Marine Protected Area. Frontiers In Marine Science, 6(214), 16p. Publisher's official version : https://doi.org/10.3389/fmars.2019.00214 , Open Access version : https://archimer.ifremer.fr/doc/00490/60213/
Chomerat Nicolas, Bilien Gwenael, Derrien Amelie, Henry Kevin, Ung Andre, Viallon Jerome, Darius Helene Taiana, Mahana Iti Gatti Clemence, Roue Melanie, Herve Fabienne, Reveillon Damien, Amzil Zouher, Chinain Mireille (2019). Ostreopsis lenticularis Y. Fukuyo (Dinophyceae, Gonyaulacales) from French Polynesia (South Pacific Ocean): A revisit of its morphology, molecular phylogeny and toxicity. Harmful Algae, 84, 95-111. https://doi.org/10.1016/j.hal.2019.02.004
Teschima Mariana M., Garrido Amana, Paris Alexandra, Nunes Flavia, Zilberberg Carla (2019). Biogeography of the endosymbiotic dinoflagellates (Symbiodiniaceae) community associated with the brooding coral Favia gravida in the Atlantic Ocean. Plos One, 14(3), e0213519 (18p.). Publisher's official version : https://doi.org/10.1371/journal.pone.0213519 , Open Access version : https://archimer.ifremer.fr/doc/00484/59602/
Miramontes Garcia Elda, Garreau Pierre, Caillaud Matthieu, Jouet Gwenael, Pellen Romain, Hernández-Molina F. Javier, Clare Michael A., Cattaneo Antonio (2019). Contourite distribution and bottom currents in the NW Mediterranean Sea: Coupling seafloor geomorphology and hydrodynamic modelling. Geomorphology, 333, 43-60. https://doi.org/10.1016/j.geomorph.2019.02.030
Lema Anais Kimberley, Metegnier Gabriel, Quere Julien, Latimier Marie, Youenou Agnes, Lambert Christophe, Fauchot Juliette, Le Gac Mickael (2019). Inter and intra-specific transcriptional and phenotypic responses of Pseudo-nitzschia under different nutrient conditions. Genome Biology And Evolution, 11(3), 731-747. Publisher's official version : https://doi.org/10.1093/gbe/evz030 , Open Access version : https://archimer.ifremer.fr/doc/00482/59392/
Pancrace Claire, Ishida Keishi, Briand Enora, Pichi Douglas Gatte, Weiz Annika R., Guljarnow Arthur, Scalvenzi Thibault, Sassoon Nathalie, Hertweck Christian, Dittmann Elke, Gugger Muriel (2019). Unique Biosynthetic Pathway in Bloom-Forming Cyanobacterial Genus Microcystis Jointly Assembles Cytotoxic Aeruginoguanidines and Microguanidines. Acs Chemical Biology, 14(1), 67-75. https://doi.org/10.1021/acschembio.8b00918
Saulquin Bertrand, Gohin Francis, Fanton D'Andon Odile Fanton (2019). Interpolated fields of satellite-derived multi-algorithm chlorophyll-a estimates at global and European scales in the frame of the European Copernicus-Marine Environment Monitoring Service. Journal Of Operational Oceanography, 12(1), 47-57. https://doi.org/10.1080/1755876X.2018.1552358
Dittami Simon M, Arboleda Enrique, Auguet Jean-Christophe, Bigalke Arite, Briand Enora, Cardenas Paco, Cardini Ulisse, Decelle Johan, Engelen Aschwin, Eveillard Damien, Gachon Claire Mm, Griffiths Sarah, Harder Tilmann, Kayal Ehsan, Kazamia Elena, Lallier Francois H, Media Monica, Marzinelli Ezequiel M, Morganti Teresa, Nunez Pons Laura, Prado Soizik, Pintado Jose, Saha Mahasweta, Selosse Marc-Andre, Skillings Derek, Stock Willem, Sunagawa Shinichi, Toulza Eve, Vorobev Alexey, Leblanc Catherine, Not Fabrice (2019). A community perspective on the concept of marine holobionts: state-of-the-art, challenges, and future directions. PeerJ Preprints, 7, e27519v1 (23p.). Publisher's official version : https://doi.org/10.7287/peerj.preprints.27519v1 , Open Access version : https://archimer.ifremer.fr/doc/00480/59209/
Grasso Florent, Le Hir Pierre (2019). Influence of morphological changes on suspended sediment dynamics in a macrotidal estuary: diachronic analysis in the Seine Estuary (France) from 1960 to 2010. Ocean Dynamics, 69(1), 83-100. https://doi.org/10.1007/s10236-018-1233-x
Chapalain Marion, Verney Romaric, Fettweis Michael, Jacquet Matthias, Le Berre David, Le Hir Pierre (2019). Investigating suspended particulate matter in coastal waters using the fractal theory. Ocean Dynamics, 69(1), 59-81. https://doi.org/10.1007/s10236-018-1229-6
Ramond Pierre, Sourisseau Marc, Simon Nathalie, Romac Sarah, Schmitt Sophie, Rigaut-Jalabert Fabienne, Henry Nicolas, De Vargas Colomban, Siano Raffaele (2019). Coupling between taxonomic and functional diversity in protistan coastal communities. Environmental Microbiology, 21(2), 730-749. https://doi.org/10.1111/1462-2920.14537
Many G, Durrieu De Madron Xavier, Verney Romaric, Bourrin F, Renosh Pr, Jourdin F, Gangloff A (2019). Geometry, fractal dimension and settling velocity of flocs during flooding conditions in the Rhône ROFI. Estuarine Coastal And Shelf Science, 219, 1-13. https://doi.org/10.1016/j.ecss.2019.01.017
Le Fur Ines, De Wit Rutger, Plus Martin, Oheix Jocelyne, Derolez Valerie, Simier Monique, Malet Nathalie, Ouisse Vincent (2019). Re-oligotrophication trajectories of macrophyte assemblages in Mediterranean coastal lagoons based on 17-year time-series. Marine Ecology Progress Series, 608, 13-32. Publisher's official version : https://doi.org/10.3354/meps12814 , Open Access version : https://archimer.ifremer.fr/doc/00474/58555/
Briand Enora, Reubrecht Sebastien, Mondeguer Florence, Sibat Manoella, Hess Philipp, Amzil Zouher, Bormans Myriam (2019). Chemically mediated interactions between Microcystis and Planktothrix : impact on their growth, morphology and metabolic profiles. Environmental Microbiology, 21(5), 1552-1566. https://doi.org/10.1111/1462-2920.14490
Menesguen Alain, Dussauze Morgan, Dumas Franck, Thouvenin Benedicte, Garnier Valerie, Lecornu Fabrice, Repecaud Michel (2019). Ecological model of the Bay of Biscay and English Channel shelf for Environmental Status assessment Part 1: Nutrients, phytoplankton and oxygen. Ocean Modelling, 133, 56-78. https://doi.org/10.1016/j.ocemod.2018.11.002
Ory Pascaline, Bonnet Antoine, Mondeguer Florence, Breitwieser Marine, Dubillot Emmanuel, Graber Marianne (2019). Metabolomics based on UHPLC-QToF- and APGC-QToF-MS reveals metabolic pathways reprogramming in response to tidal cycles in the sub-littoral species Mimachlamys varia exposed to aerial emergence. Comparative Biochemistry And Physiology D-genomics & Proteomics, 29, 74-85. https://doi.org/10.1016/j.cbd.2018.11.002
Curd Amelia, Pernet Fabrice, Corporeau Charlotte, Delisle Lizenn, Firth Louise B., Nunes Flavia, Dubois Stanislas (2019). Connecting organic to mineral: How the physiological state of an ecosystem-engineer is linked to its habitat structure. Ecological Indicators, 98, 49-60. https://doi.org/10.1016/j.ecolind.2018.10.044
Androuin Thibault, Dubois Stanislas, Decottignies Priscilla, Pelleter Ewan, Carlier Antoine (2019). The dark side of soft tissues: unexpected inorganic carbonate in the invasive slipper limpet Crepidula fornicata and its implications for stable isotope interpretations. Rapid Communications In Mass Spectrometry, 33(1), 107-115. https://doi.org/10.1002/rcm.8322
Ayache Nour, Herve Fabienne, Martin-Jezequel Veronique, Amzil Zouher, Caruana Amandine (2019). Influence of sudden salinity variation on the physiology and domoic acid production by two strains of Pseudo-nitzschia australis. Journal Of Phycology, 55(1), 186-195. https://doi.org/10.1111/jpy.12801
Ratmaya Widya, Soudant Dominique, Salmon-Monviola Jordy, Plus Martin, Cochennec-Laureau Nathalie, Goubert Evelyne, Andrieux Francoise, Barille Laurent, Souchu Philippe (2019). Reduced phosphorus loads from the Loire and Vilaine Rivers were accompanied by increasing eutrophication in Vilaine Bay (South Brittany, France). Biogeosciences, 16(6), 1361-1380. Publisher's official version : https://doi.org/10.5194/bg-2018-406 , Open Access version : https://archimer.ifremer.fr/doc/00461/57244/
Le Moal Morgane, Gascuel-Odoux Chantal, Menesguen Alain, Souchon Yves, Etrillard Claire, Levain Alix, Moatar Florentina, Pannard Alexandrine, Souchu Philippe, Lefebvre Alain, Pinay Gilles (2019). Eutrophication: A new wine in an old bottle? Science Of The Total Environment, 651(Part.1), 1-11. https://doi.org/10.1016/j.scitotenv.2018.09.139
Bajjouk Touria, Mouquet Pascal, Ropert Michel, Quod Jean-Pascal, Hoarau Ludovic, Bigot Laetitia, Le Dantec Nicolas, Delacourt Christophe, Populus Jacques (2019). Detection of changes in shallow coral reefs status: Towards a spatial approach using hyperspectral and multispectral data. Ecological Indicators, 96, 174-191. https://doi.org/10.1016/j.ecolind.2018.08.052
Pousse Emilien, Flye-Sainte-Marie Jonathan, Alunno-Bruscia Marianne, Hegaret Helene, Rannou Eric, Pecquerie Laure, Marques Goncalo M., Thomas Yoann, Castrec Justine, Fabioux Caroline, Long Marc, Lassudrie Malwenn, Hermabessiere Ludovic, Amzil Zouher, Soudant Philippe, Jean Fred (2019). Modelling paralytic shellfish toxins (PST) accumulation in Crassostrea gigas by using Dynamic Energy Budgets (DEB). Journal Of Sea Research, 143, 152-164. https://doi.org/10.1016/j.seares.2018.09.002
Reveillon Damien, Tunin-Ley Alina, Grondin Isabelle, Othmani Ahlem, Zubia Mayalen, Bunet Robert, Turquet Jean, Culioli Gerald, Briand Jean-Francois (2019). Exploring the chemodiversity of tropical microalgae for the discovery of natural antifouling compounds. Journal Of Applied Phycology, 31(1), 319-333. https://doi.org/10.1007/s10811-018-1594-z
Balti Rafik, Brodu Nicolas, Zhang Jiaxuan, Amzil Zouher, Drouin Delphine, Sechet Veronique, Masse Anthony (2019). Pre-purification by membrane filtration of paralytic shellfish toxins from Alexandrium minutum dinoflagellate. Separation And Purification Technology, 210, 152-158. Publisher's official version : https://doi.org/10.1016/j.seppur.2018.07.063 , Open Access version : https://archimer.ifremer.fr/doc/00451/56286/

Communication avec actes

Repecaud Michel, Quemener Loic, Charria Guillaume, Pairaud Ivane, Rimmelin-Maury Peggy, Claquin Pascal, Jacqueline Franck, Lefebvre Alain, Facq Jean-Valery, Retho Michael, Verney Romaric (2019). National observation infrastructure: an example of a fixed-plateforms network along the French Coast: COAST HF. Proceedings of Oceans 2019, IEEE. 6p.

Thèse / HDR

Chapalain Marion (2019). Dynamique des matières en suspension en mer cotière : caractérisation, quantification et interactions sédiments/matière organique / Dynamics of suspended particulate matter in coastal waters: characterization, quantification and interactions sediments / organic matter. PhD Thesis, Université de Bretagne Occidentale. https://archimer.ifremer.fr/doc/00500/61155/

Rapports

Carlier Antoine, Vogel Camille, Alemany Juliette (2019). Synthèse des connaissances sur les impacts des câbles électriques sous-marins: Phases de travaux et d'exploitation. Etude du compartiment benthique et des ressources halieutiques. ODE/DYNECO/LEBCO/2019. https://doi.org/10.13155/61975
Delmas Lucile (2019). Convention MTES-Ifremer 2018, Compte-rendu de fin d'exécution au 31 décembre 2018. ODE/VIGIES/DCSMM/2019. https://archimer.ifremer.fr/doc/00497/60860/
Derrien Amelie, Terre Terrillon Aouregan, Duval Audrey, Amzil Zouher (2019). Dossier de validation interne de la méthode d’analyse Emergtox de l'acide domoïque par LC-MS/MS dans les mollusques bivalves. Addendum au "Dossier de caractérisation Veille émergence toxines lipophiles".
Michez Noemie, Thiebaut Eric, Dubois Stanislas, Le Gall Line, Dauvin Jean-Claude, Andersen Ann C, Baffreau Alexandrine, Bajjouk Touria, Blanchet Hugues, De Bettinies Thibaut, De Casamajor Marie-Noelle, Derrien-Courtel Sandrine, Houbin Celine, Janson Anne-Laure, La Riviere Marie, Leveque Laurent, Menot Lenaick, Sauriau Pierre-Guy, Simon Nathalie, Viard Frederique (2019). Typologie des habitats marins benthiques de la Manche, de la Mer du Nord et de l’Atlantique. VERSION 3. UMS PatriNat, Muséum national d'Histoire naturelle, Paris. 52p.
Crenan Brieuc (2019). N/O Thalassa, Guide d’utilisation et de gestion de la Ferrybox. NE-2019-591.

Ouvrages / Actes de colloque

Bacher Cedric, Gangnery Aline, Cugier Philippe, Mongruel Remi, Strand Oivind, Frangoudes Katia (2019). Spatial, Ecological and Social Dimensions of Assessments for Bivalve Farming Management. In Smaal A., Ferreira J., Grant J., Petersen J., Strand Ø. (eds) Goods and Services of Marine Bivalves. Springer, Cham. ISBN 978-3-319-96775-2, ISBN 978-3-319-96776-9 (eBook) https://doi.org/10.1007/978-3-319-96776-9 Chap.26, pp.527-549 (Springer Nature). https://archimer.ifremer.fr/doc/00470/58138/

Expertises / Avis

ANSES (2019). Risques liés aux pinnatoxines dans les coquillages. Direction générale de l’alimentation (DGAL) et Direction générale de la santé (DGS), France, Ref. Avis de l’Anses. Rapport d’expertise collective. Saisine « 2016-SA-0013 » Pinnatoxines, 136p.https://archimer.ifremer.fr/doc/00504/61546/
Simplet Laure, Blanchet Aline, Brind'Amour Anik, Dreves Luc (2019). Demande d’avis de l'Ifremer sur le bilan de la fermeture de la concession du Pilier. DREAL des Pays de Loire - Direction Régionale de l'Environnement, de l'Aménagement et du Logement des Pays de Loire, Service risques naturels et technologiques, Division des risques naturels, hydrauliques et sous-sols, Nantes, Ref. Ifremer-PDG/2019-207 - SRNT/AM/2019-0029 du 17 janvier 2019, 8p.

Communications sans actes

Goffart Anne, Lejeune Pierre, Gohin Francis, Coudray Sylvain (2019). Response of phytoplankton to climate-driven changes in a Mediterranean coastal area : results from 4 decades of observations (1979 - 2018). 2019 Future Oceans2 IMBeR Open Science Conference, 17-21 June 2019, Brest, France.
Desroy Nicolas, Gaudin Francois, Ameziane Nadia, Broudin Caroline, Carlier Antoine, Dubois Stanislas, Fournier Jerome, Foveau Aurelie, Gentil Franck, Grall Jacques, Houbin Celine, Latry Lise, Le Mao Patrick, Thiebaut Eric (2019). Réponse de la macrofaune benthique subtidale à l’élévation de la température de l’eau dans une zone de transition biogéographique : la Manche occidentale. La CGFS a 30 ans, 24-25 avril 2019, Boulogne sur Mer, France.
Lassudrie Malwenn, Cuzin Pierre, Mertens Kenneth, Quintric Laure, Durand Patrick, Schmidt Sabine, Siano Raffaele (2019). Long-term dynamics of protist paleocommunities in a coastal marine ecosystem (Bay of Brest, NW France) by DNA metabarcoding. ASLO 2019 - Aquatic Science Meeting "Planet Water Challenges and Successes". 22 Feb -2 Mars, San Juan, Puerto Rico, USA.
Delebecq Gaspard, Siano Raffaele (2019). Revivification of ancient marine dinoflagellate using molecular biostimulation. ASLO 2019 - Aquatic Science Meeting "Planet Water Challenges and Successes". 22 Feb -2 Mars, San Juan, Puerto Rico, USA.

Posters

Mondeguer Florence, Allard Pierre-Marie, Souard Florence, Elie Nicolas, Guitton Yann, Sibat Manoella, Siano Raffaele (2019). Sélection de workflows adaptés à une analyse métabolomique plus transparente et intégrative. Phycotox2019 : Conférence nationale sur les algues toxiques GdR Phycotox. 15-16 mai 2019, Brest. https://archimer.ifremer.fr/doc/00498/60941/
Delporte C, Vanhaverbeke C, Noret N, Van Anterpwen P, Stevigny C, Hardy O, Mondeguer Florence, Touboul David, Souard Florence (2019). Molecular networking on wild “Tali” (Erythrophleum, Fabaceae) from Central tropical Africa. 12èmes Journées Scientifiques du Réseau Francophone de Métabolomique et Fluxomique (RFMF). 21-23 mai 2019, Clermont-Ferrand. https://archimer.ifremer.fr/doc/00498/60935/
Mondeguer Florence, Allard Pierre-Marie, Souard Florence, Elie Nicolas, Guitton Yann, Sibat Manoella, Siano Raffaele (2019). Workflows novateurs pour une analyse métabolomique plus claire et plus intégrative. Gen2Bio. 14 Mars 2019, Angers, France. https://archimer.ifremer.fr/doc/00485/59662/