Articles

Muller Alexandre, Poitrimol Camille, Nunes Flavia, Boye Aurelien, Curd Amelia, Desroy Nicolas, Firth Louise B, Bush Laura, Davies Andrew J, Lima Fernando P, Marzloff Martin, Meneghesso Claudia, Seabra Rui, Dubois Stanislas (2021). Musical Chairs on Temperate Reefs: Species Turnover and Replacement Within Functional Groups Explain Regional Diversity Variation in Assemblages Associated With Honeycomb Worms. Frontiers in Marine Science, 8(654141), 18p. Publisher's official version : https://doi.org/10.3389/fmars.2021.654141 , Open Access version : https://archimer.ifremer.fr/doc/00693/80506/
Firth Louise B., Curd Amelia, Hawkins Stephen.J., Knights Antony M., Blaze Julie A., Burrows Michael T., Dubois Stanislas, Edwards Hugh, Foggo Andy, Gribben Paul E., Grant Lisa, Harris Daniel, Mieszkowska Nova, Nunes Flavia, Nunn Julia D., Power Anne Marie, O’riordan Ruth M., McGrath David, Simkanin Christina, O’connor Nessa E. On the diversity and distribution of a data deficient habitat in a poorly mapped region: the case of Sabellaria alveolata L. in Ireland. Marine Environmental Research IN PRESS. https://doi.org/10.1016/j.marenvres.2021.105344
Galaska Matthew P., Wethey David S., Arias Andrés, Dubois Stanislas, Halanych Kenneth M., Woodin Sarah A. The impact of aquaculture on the genetics and distribution of the onuphid annelid Diopatra biscayensis. Ecology and Evolution IN PRESS. Publisher's official version : https://doi.org/10.1002/ece3.7447 , Open Access version : https://archimer.ifremer.fr/doc/00692/80411/
Siano Raffaele, Lassudrie Duchesne Malwenn, Cuzin Pierre, Briant Nicolas, Loizeau Veronique, Schmidt Sabine, Ehrhold Axel, Mertens Kenneth, Lambert Christophe, Quintric Laure, Noël Cyril, Latimier Marie, Quéré Julien, Durand Patrick, Penaud Aurélie Sediment archives reveal irreversible shifts in plankton communities after World War II and agricultural pollution. Current Biology IN PRESS. https://doi.org/10.1016/j.cub.2021.03.079
Yon Thomas, Sibat Manoella, Réveillon Damien, Bertrand Samuel, Chinain Mireille, Hess Philipp (2021). Deeper insight into Gambierdiscus polynesiensis toxin production relies on specific optimization of High-Performance Liquid Chromatography High Resolution Mass Spectrometry. Talanta, 232, 122400 (11p.). https://doi.org/10.1016/j.talanta.2021.122400
Nunes Flavia, Rigal François, Dubois Stanislas, Viard Frédérique (2021). Looking for diversity in all the right places? Genetic diversity is highest in peripheral populations of the reef-building polychaete Sabellaria alveolata. Marine Biology, 168(5), 63 (16p.). https://doi.org/10.1007/s00227-021-03861-8
Houliez Emilie, Briand Enora, Malo Florent, Rovillon Georges-Augustin, Hervé Fabienne, Robert Elise, Marchand Laetitia, Zykwinska Agata, Caruana Amandine (2021). Physiological changes induced by sodium chloride stress in Aphanizomenon gracile, Cylindrospermopsis raciborskii and Dolichospermum sp. Harmful Algae, 103, 102028 (17p.). https://doi.org/10.1016/j.hal.2021.102028
Sibat Manoella, Réveillon Damien, Antoine Chloé, Carpentier Liliane, Rovillon Georges-Augustin, Sechet Veronique, Bertrand Sophie (2021). Molecular networking as a novel approach to unravel toxin diversity of four strains of the dominant Dinophysis species from French coastal waters. Harmful Algae, 103, 102026 (12p.). https://doi.org/10.1016/j.hal.2021.102026
Jones Auriane, Dubois Stanislas, Desroy Nicolas, Fournier Jérome (2021). Intertidal ecosystem engineer species promote benthic-pelagic coupling and diversify trophic pathways. Marine Ecology Progress Series, 660, 119-139. https://doi.org/10.3354/meps13600
Artero Celine, Marchetti Simon, Bauer Eric, Viala Christophe, Noël Claire, Koenig Christopher, Berzins Rachel, Lampert Luis (2021). High-Resolution Acoustic Cameras Provide Direct and Efficient Assessments of Large Demersal Fish Populations in Extremely Turbid Waters. Applied Sciences-basel, 11(4), 1899 (16p.). Publisher's official version : https://doi.org/10.3390/app11041899 , Open Access version : https://archimer.ifremer.fr/doc/00687/79907/
Gaillard Sylvain, Réveillon Damien, Danthu Charline, Hervé Fabienne, Sibat Manoella, Carpentier Liliane, Hégaret Helene, Séchet Veronique, Hess Philipp Effect of a short-term salinity stress on the growth, biovolume, toxins, osmolytes and metabolite profiles on three strains of the Dinophysis acuminata-complex (Dinophysis cf. sacculus). Harmful Algae IN PRESS. https://doi.org/10.1016/j.hal.2021.102009
Bojadzija Savic Gorenka, Colinet Hervé, Bormans Myriam, Edwards Christine, Lawton Linda A., Briand Enora, Wiegand Claudia (2021). Cell free Microcystis aeruginosa spent medium affects Daphnia magna survival and stress response. Toxicon, 195, 37-47. https://doi.org/10.1016/j.toxicon.2021.03.009
Ait Ballagh Fatima Ezzahra, Rabouille Christophe, Andrieux-Loyer Francoise, Soetaert Karline, Lansard Bruno, Bombled Bruno, Monvoisin Gael, Elkalay Khalid, Khalil Karima Spatial Variability of Organic Matter and Phosphorus Cycling in Rhône River Prodelta Sediments (NW Mediterranean Sea, France): a Model-Data Approach. Estuaries and Coasts IN PRESS. https://doi.org/10.1007/s12237-020-00889-9
Chambault Philippine, Hattab Tarek, Mouquet Pascal, Bajjouk Touria, Jean Claire, Ballorain Katia, Ciccione Stéphane, Dalleau Mayeul, Bourjea Jerome (2021). A methodological framework to predict the individual and population‐level distributions from tracking data. Ecography, 44(5), 766-777. Publisher's official version : https://doi.org/10.1111/ecog.05436 , Open Access version : https://archimer.ifremer.fr/doc/00682/79412/
Roux Pauline, Siano Raffaele, Collin Karine, Bilien Gwenael, Sinquin Corinne, Marchand Laetitia, Zykwinska Agata, Delbarre-Ladrat Christine, Schapira Mathilde (2021). Bacteria enhance the production of extracellular polymeric substances by the green dinoflagellate Lepidodinium chlorophorum. Scientific Reports, 11(1), 4795 (15p.). Publisher's official version : https://doi.org/10.1038/s41598-021-84253-2 , Open Access version : https://archimer.ifremer.fr/doc/00682/79403/
Geffroy Solene, Lechat Marc-Marie, Le Gac Mickael, Rovillon Georges-Augustin, Marie Dominique, Bigeard Estelle, Malo Florent, Amzil Zouher, Guillou Laure, Caruana Amandine (2021). From the sxtA4 Gene to Saxitoxin Production: What Controls the Variability Among Alexandrium minutum and Alexandrium pacificum Strains? Frontiers In Microbiology, 12, 613199 (16p.). Publisher's official version : https://doi.org/10.3389/fmicb.2021.613199 , Open Access version : https://archimer.ifremer.fr/doc/00682/79402/
Lamarque Bastien, Deflandre Bruno, Galindo Dalto Adriana, Schmidt Sabine, Romero-Ramirez Alicia, Garabetian Frédéric, Dubosq Nicolas, Diaz Melanie, Grasso Florent, Sottolichio Aldo, Bernard Guillaume, Gillet Hervé, Cordier Marie-Ange, Poirier Dominique, Lebleu Pascal, Derriennic Hervé, Danilo Martin, Murilo Barboza Tenório Márcio, Grémare Antoine (2021). Spatial Distributions of Surface Sedimentary Organics and Sediment Profile Image Characteristics in a High-Energy Temperate Marine RiOMar: The West Gironde Mud Patch. Journal Of Marine Science And Engineering, 9(3), 242 (32p.). Publisher's official version : https://doi.org/10.3390/jmse9030242 , Open Access version : https://archimer.ifremer.fr/doc/00681/79336/
Contardo Stephanie, Lowe Ryan J., Hansen Jeff E., Rijnsdorp Dirk P., Dufois Francois, Symonds Graham (2021). Free and forced components of shoaling long waves in the absence of short wave breaking. Journal of Physical Oceanography, 51(5), 1465-1487. https://doi.org/10.1175/JPO-D-20-0214.1
Girault Mathias, Siano Raffaele, Labry Claire, Latimier Marie, Jauzein Cecile, Beneyton Thomas, Buisson Lionel, Del Amo Yolanda, Baret Jean-Christophe Variable inter and intraspecies alkaline phosphatase activity within single cells of revived dinoflagellates. The ISME Journal IN PRESS. Publisher's official version : https://doi.org/10.1038/s41396-021-00904-2 , Open Access version : https://archimer.ifremer.fr/doc/00679/79097/
Bresnan Eileen, Arevalo Fabiola, Belin Catherine, Branco Maria Ac, Cembella Allan D, Clarke Dave, Correa Jorge, Davidson Keith, Dhanji-Rapkova Monika, Fernandez Lozano Raul, Fernandez-Tejedor Margarita, Guðfinnsson Hafsteinn, Jaen Carbonell David, Laza Martinez Aitor, Lemoine Maud, Lewis Adam M, Maman Menendez Luz, Maskrey Benjamin H, McKinney April, Pazos Yolanda, Revilla Marta, Siano Raffaele, Silva Alexandra, Swan Sarah, Turner Andrew D, Schweibold Laura, Provoost Pieter, Enevoldsen Henrik (2021). Diversity and regional distribution of harmful algal events along the Atlantic margin of Europe. Harmful Algae, 102, 101976 (32p.). https://doi.org/10.1016/j.hal.2021.101976
Séchet Veronique, Sibat Manoella, Bilien Gwenael, Carpentier Liliane, Rovillon Georges-Augustin, Raimbault Virginie, Malo Florent, Gaillard Sylvain, Perrière-Rumebe Myriam, Hess Philipp, Chomérat Nicolas Characterization of toxin-producing strains of Dinophysis spp. (Dinophyceae) isolated from French coastal waters, with a particular focus on the D. acuminata-complex. Harmful Algae IN PRESS. Publisher's official version : https://doi.org/10.1016/j.hal.2021.101974 , Open Access version : https://archimer.ifremer.fr/doc/00679/79081/
Lemonnier Hugues, Royer Florence, Caradec Florian, Lopez Etienne, Hubert Clarisse, Rabiller Emilie, Desclaux Terence, Fernandez Jean-Michel, Andrieux-Loyer Francoise (2021). Diagenetic Processes in Aquaculture Ponds Showing Metal Accumulation on Shrimp Gills. Frontiers In Marine Science, 8, 625789 (14p.). Publisher's official version : https://doi.org/10.3389/fmars.2021.625789 , Open Access version : https://archimer.ifremer.fr/doc/00678/79026/
Firth Louise B, Harris Daniel, Blaze Julie A, Marzloff Martin, Boye Aurelien, Miller Peter I, Curd Amelia, Vasquez Mickael, Dunn Julia D, O'Connor Nessa E, Power Anne-Marie, Mieszkowska Nova, O’riordan Ruth M, Burrows Michael T, Bricheno Lucy M, Knights Anthony M, Nunes Flavia, Bordeyne François, Bush Laura E, Byers James E, David Carmen, Davies Andrew J, Dubois Stanislas, Edwards Hugh, Foggo Andy, Grant Lisa, Mattias Green Ja, Gribben Paul E, Lima Fernado P, McGrath David, Noel Laure Mlj, Seabra Rui, Simkanin Christina, Hawkins Stephen J Specific niche requirements underpin multidecadal range edge stability, but may introduce barriers for climate change adaptation. Diversity and Distributions IN PRESS. Publisher's official version : https://doi.org/10.1111/ddi.13224 , Open Access version : https://archimer.ifremer.fr/doc/00677/78938/
Ramond Pierre, Siano Raffaele, Schmitt Sophie, de Vargas Colomban, Marié Louis, Memery Laurent, Sourisseau Marc (2021). Phytoplankton taxonomic and functional diversity patterns across a coastal tidal front. Scientific Reports, 11(1), 2682 (15p.). Publisher's official version : https://doi.org/10.1038/s41598-021-82071-0 , Open Access version : https://archimer.ifremer.fr/doc/00677/78933/
Drouet Kevin, Jauzein Cecile, Hervio Heath Dominique, Hariri Saeed, Laza‐martinez A., Lecadet Cyrielle, Plus Martin, Seoane S., Sourisseau Marc, Lemée R., Siano Raffaele Current distribution and potential expansion of the harmful benthic dinoflagellate Ostreopsis cf. siamensis towards the warming waters of the Bay of Biscay, North‐East Atlantic. Environmental Microbiology IN PRESS. https://doi.org/10.1111/1462-2920.15406
Challier Lylian, Lemarchand Justin, Dreanno Catherine, Jauzein Cecile, Mattana Giorgio, Meriguet Guillaume, Rotenberg Benjamin, Noël Vincent (2021). Printed Dielectrophoretic Electrode‐Based Continuous Flow Microfluidic Systems for Particles 3D‐Trapping. Particle & Particle Systems Characterization, 38(2), 2000235 (11p.). https://doi.org/10.1002/ppsc.202000235
Lavigne H., Van Der Zande D., Ruddick K., Cardoso Dos Santos J.F., Gohin Francis, Brotas V., Kratzer S. (2021). Quality-control tests for OC4, OC5 and NIR-red satellite chlorophyll-a algorithms applied to coastal waters. Remote Sensing Of Environment, 255, 112237 (19p.). Publisher's official version : https://doi.org/10.1016/j.rse.2020.112237 , Open Access version : https://archimer.ifremer.fr/doc/00675/78758/
Salgado-Hernanz Paula Maria, Regaudie De Gioux Aurore, Antoine David, Basterretxea Gotzon Pelagic primary production in the coastal Mediterranean Sea: variability, trends and contribution to basin scale budgets. Biogeosciences IN PRESS. Publisher's official version : https://doi.org/10.5194/bg-2020-457 , Open Access version : https://archimer.ifremer.fr/doc/00669/78073/
Gangnery Aline, Bacher Cedric, Boyd Adele, Liu Hui, You Junyong, Strand Øivind (2021). Web-based public decision support tool for integrated planning and management in aquaculture. Ocean & Coastal Management, 203, 105447 (13p.). https://doi.org/10.1016/j.ocecoaman.2020.105447
Moreira-González Angel R., Comas-González Augusto, Valle-Pombrol Aimee, Seisdedo-Losa Mabel, Hernández-Leyva Olidia, Fernandes Luciano F., Chomérat Nicolas, Bilien Gwenael, Hervé Fabienne, Rovillon Georges-Augustin, Hess Philipp, Alonso-Hernández Carlos M., Mafra Luiz L. (2021). Summer bloom of Vulcanodinium rugosum in Cienfuegos Bay (Cuba) associated to dermatitis in swimmers. Science Of The Total Environment, 757, 143782 (12p.). https://doi.org/10.1016/j.scitotenv.2020.143782
Belin Catherine, Soudant Dominique, Amzil Zouher (2021). Three decades of data on phytoplankton and phycotoxins on the French coast: Lessons from REPHY and REPHYTOX. Harmful Algae, 102, 101733 (12p.). Publisher's official version : https://doi.org/10.1016/j.hal.2019.101733 , Open Access version : https://archimer.ifremer.fr/doc/00617/72948/
Dittami Simon M, Arboleda Enrique, Auguet Jean-Christophe, Bigalke Arite, Briand Enora, Cardenas Paco, Cardini Ulisse, Decelle Johan, Engelen Aschwin, Eveillard Damien, Gachon Claire Mm, Griffiths Sarah, Harder Tilmann, Kayal Ehsan, Kazamia Elena, Lallier François H, Media Monica, Marzinelli Ezequiel M, Morganti Teresa, Nunez Pons Laura, Prado Soizik, Pintado José, Saha Mahasweta, Selosse Marc-André, Skillings Derek, Stock Willem, Sunagawa Shinichi, Toulza Eve, Vorobev Alexey, Leblanc Catherine, Not Fabrice (2021). A community perspective on the concept of marine holobionts: current status, challenges, and future directions. Peerj, 9, e10911 (34p.). Publisher's official version : https://doi.org/10.7717/peerj.10911 , Open Access version : https://archimer.ifremer.fr/doc/00480/59209/

Rapports

Garry Pascal, Le Guyader Soizick (2021). Rapport d'activités 2020. Laboratoire Santé Environnement et Microbiologie, Laboratoire National de Référence de Microbiologie des coquillages. RBE/SGMM/LSEM 21-03. https://archimer.ifremer.fr/doc/00691/80332/
Thouvenin Benedicte (2021). Interface BIOLink entre le modèle hydrodynamique CROCO et un module pour les contaminants MET&OR. R.ODE/DYNECO/DHYSED 2021.
Thouvenin Benedicte (2021). Coupleur entre modules BIO et modèle hydrodynamique : Interfaces "Substance" et "BioLink". Documentation. R.ODE/DYNECO/DHYSED 2021.
Thouvenin Benedicte (2021). Modélisation des contaminants en milieu aquatique: Module MET&OR. R.ODE/DYNECO/DHYSED 2021. https://archimer.ifremer.fr/doc/00688/79972/
Thouvenin Benedicte, Gonzalez Jean-Louis (2021). Modélisation des contaminants chimiques dans une colonne d'eau. Modèle MOMO (MORGAN+MOCO). ODE/DYNECO/DHYSED 2021. https://archimer.ifremer.fr/doc/00686/79771/
Thouvenin Benedicte (2021). Module MUSTANG. Documentation sur sa structure et son couplage avec un modèle hydrodynamique. ODE/DYNECO/DHYSED 2021.
Thouvenin Benedicte (2021). Modèle MARS3D: Présentation d'un cas test "recherche" 2DV cross-shore Sud-Nord. Documentation. ODE/DYNECO/DHYSED.
Grasso Florent, Mengual Baptiste, Le Hir Pierre, Walther Régis, Verney Romaric (2021). MORPHOSEINE. Modélisation de l’évolution morphosédimentaire de l’estuaire de la Seine. Rapport de recherche du programme Seine-Aval 6. https://archimer.ifremer.fr/doc/00684/79630/
Macher Claire, Bacher Cedric, Bertignac Michel, Burdallet Jade, Caill-Milly Nathalie, Cugier Philippe, Marty Lea, Marzloff Martin, Pomade Adélie, Levain Alix, Rollet Claire, Savina-Rolland Marie, Thebaud Olivier, Ulrich Clara (2021). Synthèse de l’Atelier PARTAGE. Partage d’expériences de collaborations Science-Société à l’Ifremer. 3 au 5 novembre 2020.
Vasquez Mickael, Agnesi Sabrina, Al Hamdani Zyad, Annunziatellis Aldo, Castle Lewis, Laamanen Leena, Lillis Helen, Manca Eleonora, Mo Giulia, Muresan Mihaela, Nikolova Christina, Ridgeway Amy, Teaca Adrian, Todorova Valentina, Tunesi Leonardo (2021). Method for classifying EUSeaMap according to the new version of EUNIS, HELCOM HUB and the Mediterranean habitat types. D1.06 and D1.10. EASME/EMFF/2018/1.3.1.8/Lot2/SI2.810241– EMODnet Thematic Lot n° 2 – Seabed Habitats. https://doi.org/10.13155/78949
Sechaud Amelie, Allenou Jean-Pierre, Daniel Anne, Huguet Antoine, Thouard Emmanuel (2021). Approche liminaire pour aider à la définition des zones sensibles à l’eutrophisation en Martinique conformément à la Directive DRU, n° 91/271/C.E.E. du Conseil des communautés européennes du 21 mai 1991 relative au traitement des eaux urbaines résiduaires. Note : zones sensibles Eutrophisation en Martinique.
Vasquez Mickael, Agnesi Sabrina, Al Hamdani Zyad, Annunziatellis Aldo, Askew Natalie, Bekkby Trine, Bentes Luis, Castle Lewis, Doncheva Valentina, Duncan Graeme, Gonçalves Jorge, Inghilesi Roberto, Laamanen Leena, Lillis Helen, Manca Eleonora, McGrath Fergal, Mo Giulia, Monteiro Pedro, Muresan Mihaela, O'Keeffe Eimear, Pesch Roland, Pinder Jordan, Teaca Adrian, Todorova Valentina, Tunesi Leonardo, Virtanen Elina (2021). Mapping seabed habitats over large areas: prospects and limits. EMODnet Thematic Lot n° 2 – Seabed Habitats. D1.15. EASME/EMFF/2018/1.3.1.8/Lot2/SI2.810241. https://doi.org/10.13155/78021

Ouvrages / Actes de colloque

Ait Ballagh Fatima Ezzahra, Rabouille Christophe, Andrieux Francoise, Soetaert Karline, Elkalay Khalid, Khalil Karima (2021). Sedimentary Phosphorus Dynamics in the Mediterranean Rhône River Prodelta: Data-Modeling Approach. In Ksibi M. et al. (eds) Recent Advances in Environmental Science from the Euro-Mediterranean and Surrounding Regions (2nd Edition) Proceedings of 2nd Euro-Mediterranean Conference for Environmental Integration (EMCEI-2), Tunisia 2019. Springer, Cham. ISBN 978-3-030-51210-1. Part Sustainable Management of Marine and Coastal Environments: Characterization and Management of Marine and Costal Environments.pp 2111-2116.
Gohin Francis (2021). Long‐Term Surveillance and Monitoring of Natural Events in Coastal Waters. In Remote Detection and Maritime Pollution: Chemical Spill Studies. 2021. Stéphane Le Floch, Frédéric Muttin (Eds). Print ISBN:9781786306395 |Online ISBN:9781119801849 |DOI:10.1002/9781119801849. PART 2 : Remote Sensing to Support Marine Surveillance Services, Chap.6, pp.71-76 (Wiley).

Expertises / Avis

Bertignac Michel, Bizzozero Lucie, Briant Nicolas, Carlier Antoine, Cuif Marion, Laurans Martial, Mertens Kenneth, Talidec Catherine (2021). Contribution de l’Ifremer sur la demande d’autorisation environnementale déposée par Morbihan Hydro Energies pour le projet d’installation d’hydroliennes dans le golfe du Morbihan, dénommé « TIGER ». DDTM 56 - Direction Départementale des Territoires et de la Mer du Morbihan, Vannes, Ref. 21-020_Ifremer-DCB/2021.035 - Votre courriel en date du 25 février 2021, 11p.
Morandeau Gilles, Carlier Antoine, Vogel Camille, Brind'Amour Anik, Simplet Laure (2021). Réponse de l'Ifremer sur la conséquence de l’absence d’inventaire halieutique dans le bilan quinquennal environnemental de la concession de granulats marins du Payré (85). DREAL Pays de la Loire - Direction Régionale de l'Environnement, de l'Aménagement et du Logement des Pays de la Loire, Service des risques naturels et technologiques, Division des risques naturels, hydrauliques et sous-sols, Nantes, Ref. Ifremer DG/2021-405 _ P9-21-025 - Courrier DREAL SRNT/2021-0158 du 10 mars 2021, 3p.
Souchu Philippe, Bizzozero Lucie, Plus Martin (2021). Avis de l’Ifremer concernant la création d'un hôtel sur l'île de Berder – Demande de complément. DDTM 56 - Direction Départementale des Territoires et de la Mer du Morbihan, Service SENB/MARE, Vannes, Ref. LER/MPL/21.05 et Ref Avis : 21-004 - votre courrier du 18/12/2020, 6p.