Publications

Delegrange A., Lefebvre Alain, Gohin Francis, Courcot L., Vincent D. (2018). Pseudo-nitzschia sp. diversity and seasonality in the southern North Sea, domoic acid levels and associated phytoplankton communities. Estuarine, Coastal and Shelf Science, 214, 194-206. https://doi.org/10.1016/j.ecss.2018.09.030
Stern Rowena, Kraberg Alexandra, Bresnan Eileen, Kooistra Wiebe H C F, Lovejoy Connie, Montresor Marina, Morán Xose Anxelu G, Not Fabrice, Salas Rafael, Siano Raffaele, Vaulot Daniel, Amaral-Zettler Linda, Zingone Adriana, Metfies Katja (2018). Molecular analyses of protists in long-term observation programmes—current status and future perspectives. Journal of Plankton Research, 40(5), 519-536. Publisher's official version : https://doi.org/10.1093/plankt/fby035 , Open Access version : https://archimer.ifremer.fr/doc/00455/56708/
Seoane Sergio, Siano Raffaele (2018). New limits of Ostreopsis distribution in the Bay of Biscay: a first report of Ostreopsis in Santander Bay, Cantabria (Northern Spain). Harmful Algal News, (60), 10. https://doi.org/http://hab.ioc-unesco.org/index.php?option=com_content&view=article&id=22&Itemid=0
Fauvelle Vincent, Belles Angel, Budzinski Helene, Mazzella Nicolas, Plus Martin (2018). Simulated conservative tracer as a proxy for S-metolachlor concentration predictions compared to POCIS measurements in Arcachon Bay. Marine Pollution Bulletin, 133, 423-427. https://doi.org/10.1016/j.marpolbul.2018.06.005
Meng Arnaud, Corre Erwan, Probert Ian, Gutierrez-Rodriguez Andres, Siano Raffaele, Annamale Anita, Alberti Adriana, Da Silva Corinne, Wincker Patrick, Le Crom Stephane, Not Fabrice, Bittner Lucie (2018). Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network. Molecular Ecology, 27(10), 2365-2380. https://doi.org/10.1111/mec.14579
Jauzein Cecile, Acaf Laury, Accoroni Stefano, Asnaghi Valentina, Fricke Anna, Hachani Mohamed Amine, Saab Marie Abboud-Abi, Chiantore Mariachiara, Mangialajo Luisa, Totti Cecilia, Zaghmouri Imen, Lemee Rodolphe (2018). Optimization of sampling, cell collection and counting for the monitoring of benthic harmful algal blooms: Application to Ostreopsis spp. blooms in the Mediterranean Sea. Ecological Indicators, 91, 116-127. https://doi.org/10.1016/j.ecolind.2018.03.089
Lienart Camilla, Savoye Nicolas, David Valerie, Ramond Pierre, Tress Paco Rodriguez, Hanquiez Vincent, Marieu Vincent, Aubert Fabien, Aubin Sebastien, Bichon Sabrina, Boinet Christophe, Bourasseau Line, Bozec Yann, Breret Martine, Breton Elsa, Caparros Jocelyne, Cariou Thierry, Claquin Pascal, Conan Pascal, Corre Anne-Marie, Costes Laurence, Crouvoisier Muriel, Del Amo Yolanda, Derriennic Herve, Dindinaud Francois, Duran Robert, Durozier Maia, Devesa Jeremy, Ferreira Sophie, Feunteun Eric, Garcia Nicole, Geslin Sandrine, Grossteffan Emilie, Gueux Aurore, Guillaudeau Julien, Guillou Gael, Jolly Orianne, Lachaussee Nicolas, Lafont Michel, Lagadec Veronique, Lamoureux Jezabel, Lauga Beatrice, Lebreton Benoit, Lecuyer Eric, Lehodey Jean-Paul, Leroux Cedric, L'Helguen Stephane, Mace Eric, Maria Eric, Mousseau Laure, Nowaczyk Antoine, Pineau Philippe, Petit Franck, Pujo-Pay Mireille, Raimbault Patrick, Rimmelin-Maury Peggy, Rouaud Vanessa, Sauriau Pierre-Guy, Sultan Emmanuelle, Susperregui Nicolas (2018). Dynamics of particulate organic matter composition in coastal systems: forcing of spatio-temporal variability at multi-systems scale. Progress In Oceanography, 162, 271-289. https://doi.org/10.1016/j.pocean.2018.02.026
Morelle Jerome, Schapira Mathilde, Orvain Francis, Riou Philippe, Lopez Pascal Jean, Pierre-Duplessix Olivier, Rabiller Emilie, Maheux Frank, Simon Benjamin, Claquin Pascal (2018). Annual Phytoplankton Primary Production Estimation in a Temperate Estuary by Coupling PAM and Carbon Incorporation Methods. Estuaries And Coasts, 41(5), 1337-1355. https://doi.org/10.1007/s12237-018-0369-8
Siano Raffaele, Chapelle Annie, Antoine V., Michel-Guillou E., Rigaut-Jalabert F., Guillou L., Hegaret Helene, Leynaert Aude, Curd Amelia Citizen participation in monitoring phytoplankton seawater discolorations. Marine Policy IN PRESS. https://doi.org/10.1016/j.marpol.2018.01.022
Gu Haifeng, Li Xintian, Chomerat Nicolas, Luo Zhaohe, Sarno Diana, Gourvil Priscilla, Balzano Sergio, Siano Raffaele (2018). Adenoides sinensis , a new sand-dwelling dinoflagellate species from China and reexamination of Adenoides eludens from an Atlantic strain. Phycologia, 57(2), 179-190. https://doi.org/10.2216/17-76.1
Perrot Laurie, Gohin Francis, Ruiz-Pino Diana, Lampert Luis, Huret Martin, Dessier Aurelie, Malestroit Pascale, Dupuy Christine, Bourriau Paul (2018). Coccolith-derived turbidity and hydrological conditions in May in the Bay of Biscay. Progress In Oceanography, 166, 41-53. https://doi.org/10.1016/j.pocean.2017.12.008
Vassalli Massimo, Penna Antonella, Sbrana Francesca, Casabianca Silvia, Gjeci Nikolla, Capellacci Samuela, Asnaghi Valentina, Ottaviani Ennio, Giussani Valentina, Pugliese Laura, Jauzein Cecile, Lemee Rodolphe, Hachani Mohamed Amine, Turki Souad, Acaf Laury, Saab Marie Abboud-Abi, Fricke Anna, Mangialajo Luisa, Bertolotto Rosella, Totti Cecilia, Accoroni Stefano, Berdalet Elisa, Vila Magda, Chiantore Mariachiara (2018). Intercalibration of counting methods for Ostreopsis spp. blooms in the Mediterranean Sea. Ecological Indicators, 85, 1092-1100. https://doi.org/10.1016/j.ecolind.2017.07.063
Lambert Clement, Penaud Aurelie, Vidal Muriel, Klouch Khadidja, Gregoire Gwendoline, Ehrhold Axel, Eynaud Frederique, Schmidt Sabine, Ragueneau Olivier, Siano Raffaele (2018). Human-induced river runoff overlapping natural climate variability over the last 150 years: Palynological evidence (Bay of Brest, NW France). Global And Planetary Change, 160, 109-122. https://doi.org/10.1016/j.gloplacha.2017.11.004
Le Fur Ines, De Wit Rutger, Plus Martin, Oheix Jocelyne, Simier Monique, Ouisse Vincent (2018). Submerged benthic macrophytes in Mediterranean lagoons: distribution patterns in relation to water chemistry and depth. Hydrobiologia, 808(1), 175-200. https://doi.org/10.1007/s10750-017-3421-y
Colas Florent, Tardivel Morgan, Perchoc Jonathan, Lunven Michel, Forest Bertrand, Guyader Gerard, Danielou Marie-Madeleine, Le Mestre Sophie, Bourriau Paul, Antajan Elvire, Sourisseau Marc, Huret Martin, Petitgas Pierre, Romagnan Jean-Baptiste (2018). The ZooCAM, a new in-flow imaging system for fast onboard counting, sizing and classification of fish eggs and metazooplankton. Progress In Oceanography, 166, 54-65. https://doi.org/10.1016/j.pocean.2017.10.014
Huret Martin, Bourriau Paul, Doray Mathieu, Gohin Francis, Petitgas Pierre (2018). Survey timing vs. ecosystem scheduling: Degree-days to underpin observed interannual variability in marine ecosystems. Progress In Oceanography, 166, 30-40. Publisher's official version : https://doi.org/10.1016/j.pocean.2017.07.007 , Open Access version : https://archimer.ifremer.fr/doc/00394/50584/

Rapports

Le Gac-Abernot Chantal, Antajan Elvire, Courtay Gaelle, Dreves Luc, Hernandez Farinas Tania, Lamort Laure, Loots Christophe, Rabiller Emilie, Ropert Michel, Schlaich Ivan (2018). Surveillance écologique et halieutique du site électronucléaire de Flamanville. Année 2017. RST ODE/LITTORAL/LER/BO/18.01. https://archimer.ifremer.fr/doc/00458/57008/
Bizzozero Lucie, Gohin Francis, Lampert Luis, Fortune Mireille, Cochennec-Laureau Nathalie (2018). Apport des images satellite à l'évaluation de la qualité des masses d'eau DCE. Analyse des données de Chlorophylle a sur la période 2011-2016 dans les masses d'eau côtière du bassin versant Loire-Bretagne. R.ODE/LITTORAL/LER/MPL/18.09. https://archimer.ifremer.fr/doc/00453/56465/
Schlaich Ivan, Antajan Elvire, Francoise Sylvaine, Loots Christophe, Lamort Laure, Maheux Frank, Rabiller Emilie, Ropert Michel, Simon Benjamin (2018). Surveillance écologique et halieutique du site électronucléaire de Penly. Année 2017. Rapport scientifique annuel. IFREMER/RBE/HMMN/RHPEB 18-001. https://archimer.ifremer.fr/doc/00450/56199/
Soudant Dominique, Auby Isabelle, Daniel Anne (2018). Incertitudes des méthodes d’évaluation « eaux littorales » : utilisation de modèles linéaires dynamiques pour l’évaluation des incertitudes des paramètres hydrologiques. Transférer les méthodes de bio indication. Compléments apportés au guide méthodologique et EIL phytoplancton et participation au CST. Rapport AQUAREF 2017. https://archimer.ifremer.fr/doc/00441/55306/
Ifremer (2018). Apparition, préservation, maintien et évolution des organismes vivants dans le milieu marin. Rapport du groupe 3a - Réflexion stratégique 2017-2018.
Ifremer (2018). Sciences en société. Rapport du groupe 2d - Réflexion stratégique 2017-2018.
Devreker David, Lefebvre Alain (2018). Évaluation du descripteur 5 « Eutrophisation » en France métropolitaine. Rapport scientifique pour l’évaluation 2018 au titre de la DCSMM. ODE/LITTORAL/LER.BL/17.08. https://archimer.ifremer.fr/doc/00437/54868/
Lampert Luis (2018). Distribution des pigments phytoplanctoniques sur les eaux côtières de Bretagne. RST DYNECO n°2018-02. https://archimer.ifremer.fr/doc/00436/54806/
Souchu Philippe, Cochennec-Laureau Nathalie, Ratmaya Widya, Retho Michael, Andrieux Francoise, Le Merrer Yoann, Barille Laurent, Barille Anne-Laure, Goubert Evelyne, Plus Martin, Laverman Anniet (2018). Diagnostic étendu de l'eutrophisation (DIETE). Rôle des sédiments dans le cycle des nutriments et impacts sur l'eutrophisation de la baie de Vilaine (2014-2017). Rapport de contrat. RST/LER/MPL/18.04. https://archimer.ifremer.fr/doc/00425/53695/
Lampert Luis (2018). Tutoriel d’extraction des données des fichiers satellite GeoTIFF. Utilisation des logiciel QGIS et R. RST.DYNECO n° 2018-01. https://archimer.ifremer.fr/doc/00423/53405/

Communications sans actes

Siano Raffaele, Lassudrie Duchesne Malwenn, Delebecq Gaspard, Jauzein Cecile, Hess Philipp, Labry Claire, Le Gac Mickael, Mertens Kenneth, Mondeguer Florence, Sibat Manoella (2018). Paleoecology of marine protists : community dynamics and population adaptations revealed by ancient DNA metabarcoding and physiology of revived dinoflagellates. ISOP / PSA joint meeting. July 29th – August 2nd, 2018, Vancouver, University of British Columbia (Canada).

Posters

Mondeguer Florence, Souard Florence, Guitton Yann, Latimier Marie, Quere Julien, Sibat Manoella, Hess Philipp, Siano Raffaele (2018). First insight on metabolomics workflows and differences between dinoflagellate: characterization and discrimination of modern and ancient strains and their algal growth. 11èmes Journées Scientifiques du Réseau Francophone de Métabolomique et Fluxomique (RMFM). 23-25 mai 2018, Liège, Belgique. https://archimer.ifremer.fr/doc/00440/55199/