Lapegue Sylvie, Cornette Florence, Heurtebise Serge, Lamy Jean-Baptiste, Bierne Nicolas, Gagnaire Pierre-Alexandre (2021). RAD-sequences of Crassostrea gigas X Crassostrea angulata families. IFREMER. https://doi.org//10.12770/d354e05c-384f-4a86-9357-9688f01b9eb3

Delmotte Jean, Pelletier Camille, Morga Benjamin, Galinier Richard, Petton Bruno, Lamy Jean-Baptiste, Kaltz Oliver, Avarre Jean-Christophe, Jacquot Maude, Montagnani Caroline, Escoubas Jean Michel (2022). Genetic Diversity and Connectivity of the Ostreid Herpesvirus 1 Populations in France: A First Attempt to Phylogeographic Inference for a Marine Mollusc Disease . Virus Evolution , 8(1), veac039 (14p.) . Publisher's official version : https://doi.org/10.1093/ve/veac039 , Open Access version : https://archimer.ifremer.fr/doc/00766/87834/

Hammel Maurine, Simon Alexis, Arbiol Christine, Villalba Antonio, Burioli Erika Av, Pépin Jean-Francois, Lamy Jean-Baptiste, Benabdelmouna Abdellah, Bernard Ismael, Houssin Maryline, Charrière Guillaume, Destoumieux Garzon Delphine, Welch John J., Metzger Michael J, Bierne Nicolas (2022). Prevalence and polymorphism of a mussel transmissible cancer in Europe . Molecular Ecology , 31(3), 736-751 . Publisher's official version : https://doi.org/10.1111/mec.16052 , Open Access version : https://archimer.ifremer.fr/doc/00703/81540/

Sussarellu Rossana, Chouvelon Tiphaine, Aminot Yann, Couteau Jerome, Loppion Geraldine, Dégremont Lionel, Lamy Jean-Baptiste, Akcha Farida, Rouxel Julien, Berthelin Clothilde, Briaudeau Tifanie, Izagirre Urtzi, Mauffret Aourell, Grouhel Anne, Burgeot Thierry (2022). Differences in chemical contaminants bioaccumulation and ecotoxicology biomarkers in Mytilus edulis and Mytilus galloprovincialis and their hybrids . Environmental Pollution , 292(Part. A), 118328 (16p.) . Publisher's official version : https://doi.org/10.1016/j.envpol.2021.118328 , Open Access version : https://archimer.ifremer.fr/doc/00729/84091/

Dégremont Lionel, Maurouard Elise, Jourdan Antoine, Lamy Jean-Baptiste, Boudry Pierre (2022). SNP-based parentage analyses over two successive generations demonstrates the feasibility of efficient production of inbred lines in the Pacific oyster (Crassostrea gigas) by self-fertilization of simultaneous hermaphrodites despite severe inbreeding depression . Aquaculture , 547, 737443 (5p.) . Publisher's official version : https://doi.org/10.1016/j.aquaculture.2021.737443 , Open Access version : https://archimer.ifremer.fr/doc/00722/83375/

Broquard Coralie, Saowaros Suwansa-Ard, Lepoittevin Mélanie, Degremont Lionel, Lamy Jean-Baptiste, Morga Benjamin, Elizur Abigail, Martinez Anne-Sophie (2021). Gonadal transcriptomes associated with sex phenotypes provide potential male and female candidate genes of sex determination or early differentiation in Crassostrea gigas, a sequential hermaphrodite mollusc . Bmc Genomics , 22(1), 609 (16p.) . Publisher's official version : https://doi.org/10.1186/s12864-021-07838-1 , Open Access version : https://archimer.ifremer.fr/doc/00718/83026/

Boudry Pierre, Allal Francois, Aslam Muhammad L., Bargelloni Luca, Bean Tim P., Brard-Fudulea Sophie, Brieuc Marine S.O., Calboli Federico C.F., Gilbey John, Haffray Pierrick, Lamy Jean-Baptiste, Morvezen Romain, Purcell Catherine, Prodöhl Paulo A., Vandeputte Marc, Waldbieser Geoffrey C., Sonesson Anna K., Houston Ross D. (2021). Current status and potential of genomic selection to improve selective breeding in the main aquaculture species of International Council for the Exploration of the Sea (ICES) member countries . Aquaculture Reports , 20, 100700 (14p.) . Publisher's official version : https://doi.org/10.1016/j.aqrep.2021.100700 , Open Access version : https://archimer.ifremer.fr/doc/00694/80581/

Morga Benjamin, Jacquot Maude, Pelletier Camille, Chevignon Germain, Dégremont Lionel, Biétry Antoine, Pepin Jean-Francois, Heurtebise Serge, Escoubas Jean Michel, Bean Tim P., Rosani Umberto, Bai Chang-Ming, Renault Tristan, Lamy Jean-Baptiste (2021). Genomic Diversity of the Ostreid Herpesvirus Type 1 Across Time and Location and Among Host Species . Frontiers In Microbiology , 12, 711377 (13p.) . Publisher's official version : https://doi.org/10.3389/fmicb.2021.711377 , Open Access version : https://archimer.ifremer.fr/doc/00706/81762/

Simon Alexis, Arbiol Christine, Nielsen Einar Eg, Couteau Jérôme, Sussarellu Rossana, Burgeot Thierry, Bernard Ismaël, Coolen Joop W. P., Lamy Jean-Baptiste, Robert Stephane, Skazina Maria, Strelkov Petr, Queiroga Henrique, Cancio Ibon, Welch John J., Viard Frédérique, Bierne Nicolas (2020). Replicated anthropogenic hybridisations reveal parallel patterns of admixture in marine mussels . Evolutionary Applications , 13(3), 575-599 . Publisher's official version : https://doi.org/10.1111/eva.12879 , Open Access version : https://archimer.ifremer.fr/doc/00594/70600/

Fleury Elodie, Montagnani Caroline, Morga Benjamin, Richard Marion (2020). Compte-rendu des journées Mollusques Marins et Conchylicultures .

Marandel Florianne, Charrier Gregory, Lamy Jean-Baptiste, Le Cam Sabrina, Lorance Pascal, Trenkel Verena (2020). Estimating effective population size using RADseq: Effects of SNP selection and sample size . Ecology And Evolution , 10(4), 1929-1937 . Publisher's official version : https://doi.org/10.1002/ece3.6016 , Open Access version : https://archimer.ifremer.fr/doc/00607/71934/

Broquard Coralie, Martinez Anne-Sophie, Maurouard Elise, Lamy Jean-Baptiste, Dégremont Lionel (2020). Sex determination in the oyster Crassostrea gigas - A large longitudinal study of population sex ratios and individual sex changes . Aquaculture , 515, 734555 (8p.) . Publisher's official version : https://doi.org/10.1016/j.aquaculture.2019.734555 , Open Access version : https://archimer.ifremer.fr/doc/00587/69868/

Arzul Isabelle, Bass David, Figueras Antonio, Lamy Jean-Baptiste, Paillard Christine, Furones Dolors (2019). Key outcomes from VIVALDI on preventing and mitigating bivalve diseases . Vivaldi - Final conference. 26-28 November 2019, Brest . https://archimer.ifremer.fr/doc/00603/71518/

Martenot Claire, Faury Nicole, Morga Benjamin, Degremont Lionel, Lamy Jean-Baptiste, Houssin Maryline, Renault Tristan (2019). Exploring First Interactions Between Ostreid Herpesvirus 1 (OsHV-1) and Its Host, Crassostrea gigas: Effects of Specific Antiviral Antibodies and Dextran Sulfate . Frontiers In Microbiology , 10(1128), 13p. Publisher's official version : https://doi.org/10.3389/fmicb.2019.01128 , Open Access version : https://archimer.ifremer.fr/doc/00501/61273/

Pepin Jean-Francois, Benabdelmouna Abdellah, Bierne Nicolas, Chasselin Leo, Degremont Lionel, Guesdon Stephane, Lamy Jean-Baptiste, Le Moine Olivier, Normand Julien, Robert Stephane, Soletchnik Patrick (2019). Mortalités de moules bleues dans les secteurs mytilicoles : description et étude des facteurs liés, action – MORBLEU-2018 . RBE/SG2M-LGPMM-2019 . https://doi.org/10.13155/70056

Marandel Florianne, Lorance Pascal, Berthele Olivier, Trenkel Verena, Waples Robin S., Lamy Jean-Baptiste (2019). Estimating effective population size of large marine populations, is it feasible? Fish And Fisheries , 20(1), 189-198 . Publisher's official version : https://doi.org/10.1111/faf.12338 , Open Access version : https://archimer.ifremer.fr/doc/00470/58162/

Gueguen Yannick, Arzul Isabelle, Goulletquer Philippe (2019). Groupe de Travail « Huîtres » - Plan d’Action 2020-2023. Comprendre et prévoir l’évolution du socio-écosystème ostréicole dans le cadre du changement global . https://archimer.ifremer.fr/doc/00900/101196/

Gagnaire Pierre-Alexandre, Lamy Jean-Baptiste, Cornette Florence, Heurtebise Serge, Degremont Lionel, Flahauw Emilie, Boudry Pierre, Bierne Nicolas, Lapegue Sylvie (2018). Analysis of genome-wide differentiation between native and introduced populations of the cupped oysters Crassostrea gigas and Crassostrea angulata . Genome Biology And Evolution , 10(9), 2518-2534 . Publisher's official version : https://doi.org/10.1093/gbe/evy194 , Open Access version : https://archimer.ifremer.fr/doc/00455/56622/

Lapegue Sylvie, Bechemin Christian, Le Guyader Soizick, Stavrakakis Christophe, Rivet Florence (2018). Rapport d’activités 2017 de l’unité SG2M, Santé Génétique et Microbiologie des Mollusques . R.RBE/SG2M/2018-01 .

Pepin Jean-Francois, Benabdelmouna Abdellah, Bierne Nicolas, Costes Louis, Degremont Lionel, Garcia Celine, Guesdon Stephane, Lamy Jean-Baptiste, Le Moine Olivier, Morga Benjamin, Normand Julien, Robert Stephane, Saunier Alice, Soletchnik Patrick, Travers Marie-Agnes (2018). Mortalités de moules bleues dans les secteurs mytilicoles : description et étude des facteurs liés, action –MORBLEU-2017 . R.INT.RBE/SG2M-LGPMM-2018 . https://doi.org/10.13155/61503

Ifremer (2018). Apparition, préservation, maintien et évolution des organismes vivants dans le milieu marin . Rapport du groupe 3a - Réflexion stratégique 2017-2018 .

Azema Patrick, Maurouard Elise, Brun Aurelien, Lamy Jean-Baptiste, Morga Benjamin, Travers Marie-Agnes, Degremont Lionel (2017). Paramètres génétiques de la résistance à Vibrio aestuarianus et de la résistance à OsHV-1 . Journées techniques Sysaaf. 7 et 8 décembre 2017, Rennes .

Lamy Jean-Baptiste, Heurtebise Serge, Maurouard Elise, Lapegue Sylvie, Degremont Lionel (2017). Parentage assignation using SNP markers, application to Crassostrea gigas (Magallana gigas) . 27ème Journées Techniques de la section aquacole du SYSAAF. 7-8 décembre 2017, Rennes, France .

Lamy Jean-Baptiste, Degremont Lionel, Maurouard Elise, Lapegue Sylvie, Boison Solomon Antwi, Moghadam Hooman (2017). Experimental design to unravel the genomic determinants of resistance to OsHV1 infection. WP-3.1.1 . Journées internes du projet européen Vivaldi. 6-7 décembre 2017, Ifremer Bouin, France .

Lamy Jean-Baptiste, Renault Tristan, Bietry Antoine, Faury Nicole, Webb Steeve, Pepin Jean-Francois, Morga Benjamin (2017). Unsuspected OsHV-1 genomic diversity at inter and intra-host level . Journées internes du projet européen Vivaldi. 6-7 décembre 2017, Ifremer Bouin, France .

Gagnaire Pierre-Alexandre, Lamy Jean-Baptiste, Cornette Florence, Heurtebise Serge, Flahauw Emilie, Degremont Lionel, Auge M.T., Boudry Pierre, Bierne Nicolas, Lapegue Sylvie (2017). Genomic patterns of differentiation in native and introduced populations of the cupped oysters Crassostrea gigas and Crassostrea angulata (and in hybrid progenies) . iMarCo2017 - 3rd International Marine Connectivity Conference. September 11-13, 2017, Louvain-la-Neuve, Belgium .

Francois Cyrille, Quellec Stéphane, Collewet Guylaine, Peyramaure Paul, Musse Maja, Lamy Jean-Baptiste, Sauriau Pierre-Guy, Haure Joel (2017). High-throughput phenotyping of health biomarkers in Crassostrea gigas by magnetic resonance imaging . Physiomar 17. 18-21 September 2017, Cambridge, UK . https://archimer.ifremer.fr/doc/00404/51553/

Saenz-Romero Cuauhtemoc, Lamy Jean-Baptiste, Ducousso Alexis, Musch Brigitte, Ehrenmann Francois, Delzon Sylvain, Cavers Stephen, Chalupka Wladyslaw, Dagdas Said, Hansen Jon Kehlet, Lee Steve J., Liesebach Mirko, Rau Hans-Martin, Psomas Achilleas, Schneck Volker, Steiner Wilfried, Zimmermann Niklaus E., Kremer Antoine (2017). Adaptive and plastic responses of Quercus petraea populations to climate across Europe . Global Change Biology , 23(7), 2831-2847 . Publisher's official version : https://doi.org/10.1111/gcb.13576 , Open Access version : https://archimer.ifremer.fr/doc/00358/46967/

Azema Patrick, Maurouard Elise, Lamy Jean-Baptiste, Degremont Lionel (2017). The use of size and growing height to improve Crassostrea gigas farming and breeding techniques against OsHV-1 . Aquaculture , 471, 121-129 . Publisher's official version : https://doi.org/10.1016/j.aquaculture.2017.01.011 , Open Access version : https://archimer.ifremer.fr/doc/00366/47717/

Azema Patrick, Lamy Jean-Baptiste, Boudry Pierre, Renault Tristan, Travers Marie-Agnes, Degremont Lionel (2017). Genetic parameters of resistance to Vibrio aestuarianus, and OsHV-1 infections in the Pacific oyster, Crassostrea gigas, at three different life stages . Genetics Selection Evolution , 49(23), 1-16 . Publisher's official version : https://doi.org/10.1186/s12711-017-0297-2 , Open Access version : https://archimer.ifremer.fr/doc/00372/48350/

Degremont Lionel, Maurouard Elise, Godfrin Yoann, Travers Marie-Agnes, Morga Benjamin, Lamy Jean-Baptiste, Benabdelmouna Abdellah (2017). Double résistance aux infections dues aux organismes pathogènes Vibrio aestuarianus et OsHV-1 chez l’huître creuse Crassostrea gigas – DORE. Rapport scientifique final de l’étude DORE, convention DPMA-Ifremer 2016 . RBE/SG2M-LGPMM . https://archimer.ifremer.fr/doc/00404/51530/

Lapegue Sylvie, Renault Tristan, Bechemin Christian, Le Guyader Soizick, Stavrakakis Christophe, Rivet Florence (2016). Rapport d'activités 2015 de l'Unité SG2M : Santé, Génétique et Microbiologie des Mollusques . https://archimer.ifremer.fr/doc/00319/43055/

Renault Tristan, Lapegue Sylvie, Le Guyader Soizick, Hatt Philippe-Jacques, Rivet Florence (2015). Rapport d'activités 2014 de l'Unité SG2M. Santé, Génétique et Microbiologie des mollusques . https://archimer.ifremer.fr/doc/00283/39455/

Degremont Lionel, Lamy Jean-Baptiste, Pepin Jean-Francois, Travers Marie-Agnes, Renault Tristan (2015). New Insight for the Genetic Evaluation of Resistance to Ostreid Herpesvirus Infection, a Worldwide Disease, in Crassostrea gigas . Plos One , 10(6), - . Publisher's official version : https://doi.org/10.1371/journal.pone.0127917 , Open Access version : https://archimer.ifremer.fr/doc/00269/38066/

Urli Morgane, Lamy Jean-Baptiste, Sin Fabrice, Burlett Regis, Delzon Sylvain, Porte Annabel J. (2015). The high vulnerability of Quercus robur to drought at its southern margin paves the way for Quercus ilex . Plant Ecology , 216(2), 177-187 . https://doi.org/10.1007/s11258-014-0426-8

Marchand L., Nsanganwimana F., Cook B. J., Vystavna Y., Huneau F., Le Coustumer P., Lamy Jean-Baptiste, Oustriere N., Mench M. (2014). Trace element transfer from soil to leaves of macrophytes along the Jalle d'Eysines River, France and their potential use as contamination biomonitors . Ecological Indicators , 46, 425-437 . https://doi.org/10.1016/j.ecolind.2014.07.011

Marchand L., Nsanganwimana F., Lamy Jean-Baptiste, Quintela-Sabaris C., Gonnelli C., Colzi I., Fletcher T., Oustriere N., Kolbas A., Kidd P., Bordas F., Newell P., Alvarenga P., Deletic A., Mench M. (2014). Root biomass production in populations of six rooted macrophytes in response to Cu exposure: Intra-specific variability versus constitutive-like tolerance . Environmental Pollution , 193, 205-215 . Publisher's official version : https://doi.org/10.1016/j.envpol.2014.07.001 , Open Access version : https://archimer.ifremer.fr/doc/00201/31183/

Plomion Christophe, Chancerel Emilie, Endelman Jeffrey, Lamy Jean-Baptiste, Mandrou Eric, Lesur Isabelle, Ehrenmann Francois, Isik Fikret, Bink Marco C. A. M., Van Heerwaarden Joost, Bouffier Laurent (2014). Genome-wide distribution of genetic diversity and linkage disequilibrium in a mass-selected population of maritime pine . Bmc Genomics , 15(171), 1-16 . https://doi.org/10.1186/1471-2164-15-171

Zenni Rafael Dudeque, Lamy Jean-Baptiste, Lamarque Laurent Jean, Porte Annabel Josee (2014). Adaptive evolution and phenotypic plasticity during naturalization and spread of invasive species: implications for tree invasion biology . Biological Invasions , 16(3), 635-644 . https://doi.org/10.1007/s10530-013-0607-8

Lamy Jean-Baptiste, Delzon Sylvain, Bouche Pauline S., Alia Ricardo, Vendramin Giovanni Giuseppe, Cochard Herve, Plomion Christophe (2014). Limited genetic variability and phenotypic plasticity detected for cavitation resistance in a Mediterranean pine . New Phytologist , 201(3), 874-886 . https://doi.org/10.1111/nph.12556

Delzon Sylvain, Urli Morgane, Samalens Jean-Charles, Lamy Jean-Baptiste, Lischke Heike, Sin Fabrice, Zimmermann Niklaus E., Porte Annabel J. (2013). Field Evidence of Colonisation by Holm Oak, at the Northern Margin of Its Distribution Range, during the Anthropocene Period . Plos One , 8(11), e80443 . Publisher's official version : https://doi.org/10.1371/journal.pone.0080443 , Open Access version : https://archimer.ifremer.fr/doc/00259/37038/

Saenz-Romero Cuauhtemoc, Lamy Jean-Baptiste, Loya-Rebollar Esperanza, Plaza-Aguilar Andres, Burlett Regis, Lobit Philippe, Delzon Sylvain (2013). Genetic variation of drought-induced cavitation resistance among Pinus hartwegii populations from an altitudinal gradient . Acta Physiologiae Plantarum , 35(10), 2905-2913 . https://doi.org/10.1007/s11738-013-1321-y

Chancerel Emilie, Lamy Jean-Baptiste, Lesur Isabelle, Noirot Celine, Klopp Christophe, Ehrenmann Francois, Boury Christophe, Le Provost Gregoire, Label Philippe, Lalanne Celine, Leger Valerie, Salin Franck, Gion Jean-Marc, Plomion Christophe (2013). High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination . Bmc Biology , 11(50), 1-19 . https://doi.org/10.1186/1741-7007-11-50

Lamy Jean-Baptiste, Plomion Christophe, Kremer Antoine, Delzon Sylvain (2012). Q(ST) < F-ST As a signature of canalization . Molecular Ecology , 21(23), 5646-5655 . https://doi.org/10.1111/mec.12017

Lamy Jean-Baptiste, Lagane Frederic, Plomion Christophe, Cochard Herve, Delzon Sylvain (2012). Micro-evolutionary patterns of juvenile wood density in a pine species . Plant Ecology , 213(11), 1781-1792 . https://doi.org/10.1007/s11258-012-0133-2

Jansen S., Lamy Jean-Baptiste, Burlett R., Cochard H., Gasson P., Delzon S. (2012). Plasmodesmatal pores in the torus of bordered pit membranes affect cavitation resistance of conifer xylem . Plant Cell And Environment , 35(6), 1109-1120 . https://doi.org/10.1111/j.1365-3040.2011.02476.x

Lamy Jean-Baptiste, Bouffier Laurent, Burlett Regis, Plomion Christophe, Cochard Herve, Delzon Sylvain (2011). Uniform Selection as a Primary Force Reducing Population Genetic Differentiation of Cavitation Resistance across a Species Range . Plos One , 6(8), e23476 . Publisher's official version : https://doi.org/10.1371/journal.pone.0023476 , Open Access version : https://archimer.ifremer.fr/doc/00259/37044/

Alberto F., Bouffier L., Louvet J. -M., Lamy Jean-Baptiste, Delzon S., Kremer A. (2011). Adaptive responses for seed and leaf phenology in natural populations of sessile oak along an altitudinal gradient . Journal Of Evolutionary Biology , 24(7), 1442-1454 . https://doi.org/10.1111/j.1420-9101.2011.02277.x