Francois Allal

Francois Allal

Contact par courriel

Employeur : Ifremer

Site : Palavas

Adresse postale : Station de Palavas - Chemin de Maguelone - 34250 Palavas les Flots

URL : https://annuaire.ifremer.fr/cv/20921/

ORCID orcid icon : 0000-0002-8232-904X

ResearcherID : Q-8075-2018

Projets nationaux ou internationaux

  1. Fishness (2022-2026) « Fish robustNess: a key element of population vulnerability and sustainable aquaculture », ANR project
  2. MedMax (2021-2023) « Maximization of resistance to pathogens in a Mediterranean species, the European sea bass », French EMFF project
  3. AquaExcel3.0 (2020-2025) « AQUAculture infrastructures for EXCELlence in EUropean fish research 3.0 », H2020 EU project
  4. Phenomix (2020-2023) « Développement de la prédiction phénomique », French EMFF project
  5. AquaIMPACT (2019-2022) « Aquaculture breeding and feeding: Impact and implementation », H2020 EU project
  6. SELFIE (2019-2022) « SELection for Feed efficIEncy », French EMFF project
  7. GENESEA (2016-2021) « Développement et validation d’une procédure de sélection génomique chez le bar et la daurade pour améliorer la résistance à des pathologies », French EMFF project (coordinator)
  8. SUSHIFISH (2016-2019) « SUStainable production of High quality aquaculture FISH using innovative tools and production strategies and integrating controlled slaughter and novel processing methods and cold chain management », COFASP EU project
  9. AquaExcel2020 (2015-2020) « AQUAculture infrastructures for EXCELlence in European fish research towards 2020 », H2020 EU project
  10. FISHBOOST (2014-2019) « Boosting the domestication of established farmed finfish species through selective breeding » FP7 EU project
  11. RE-SIST (2013-2018) « Improving by selection the pathogene resistance of farmed-fish»
  12. CRECHE (2015-2023) « CRÉation de CHeptels Expérimentaux », DPMA annuel projects

 



Jeux de données

2021

Allal Francois (2021). Séquençes bar pour la déctection de l'albinisme. IFREMER. https://doi.org/10.12770/3bddd5f6-dda2-47f5-9f6d-eae934c2d657

2020

Faggion Sara, Vandeputte Marc, Vergnet Alain, Clota Frederic, Blanc Marie-Odile, Sanchez Pierre, Ruelle Francois, Allal Francois (2020). Data on growth during very early life stages of European sea bass (Dicentrarchus labrax L.) . SEANOE . https://doi.org/10.17882/75983
Allal Francois, Griot Ronan, Phocas Florence, Brard-Fudulea Sophie, Morvezen Romain, Bestin Anastasia, Haffray Pierrick, François Yoannah, Morin Thierry, Poncet Charles, Vergnet Alain, Cariou Sophie, Brunier Joseph, Bruant Jean-Sébastien, Peyrou Bruno, Gagnaire Pierre-Alexandre, Vandeputte Marc (2020). Genotyping of 4 European sea bass families with the DlabCHIP SNPs genotyping array . SEANOE . https://doi.org/10.17882/75696
Leitwein Maeva, Durif Ghislain, Delpuech Emilie, Gagnaire Pierre-Alexandre, Ernande Bruno, Vandeputte Marc, Vergnet Alain, Duranton Maud, Clota Frederic, Allal Francois (2020). The fate of a polygenic phenotype within the genomic landscapes of introgression in the European seabass hybrid zone . SEANOE . https://doi.org/10.17882/98771
Allal Francois, Griot Ronan, Phocas Florence, Brard-Fudulea Sophie, Morvezen Romain, Bestin Anastasia, Haffray Pierrick, François Yoannah, Morin Thierry, Poncet Charles, Vergnet Alain, Cariou Sophie, Brunier Joseph, Bruant Jean-Sébastien, Peyrou Bruno, Lavisse Philippe, Gagnaire Pierre-Alexandre, Vandeputte Marc (2020). Axiom DlabCHIP, a 57K SNPs genotyping array for European sea bass (Dicentrarchus labrax): array design and genetic map . SEANOE . https://doi.org/10.17882/75680

2018

Anastasiadi Dafni, Vandeputte Marc, Sanchez-Baizan Núria, Allal Francois, Piferrer Francesc (2018). Dynamic epimarks in sex-related genes predict gonad phenotype in seabass, a fish with mixed genetic and environmental sex determination . SEANOE . https://doi.org/10.17882/57246
Faggion Sara, Vandeputte Marc, Chatain Beatrice, Gagnaire Pierre-Alexandre, Allal Francois (2018). Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L. SEANOE . https://doi.org/10.17882/55576

2017

Besson Mathieu, Allal Francois, Chatain Beatrice, Vergnet Alain, Clota Frederic, Vandeputte Marc (2017). Combining Individual Phenotypes of Feed Intake with Genomic Data to Improve Feed Efficiency in Sea Bass . SEANOE . https://doi.org/10.17882/58267

2016

Ferrari Sebastien, Horri Khaled, Allal Francois, Vergnet Alain, Benhaim David, Vandeputte Marc, Chatain Beatrice, Begout Marie-Laure (2016). Heritability of Boldness and Hypoxia Avoidance in European Seabass, Dicentrarchus labrax . SEANOE . https://doi.org/10.17882/47080


Bibliographie

2024

Clota Frederic, Goikoetxea Alexander, Vergnet Alain, Blanc Marie-Odile, Lallement Stephane, Ruelle Francois, Leitwein Maeva, Allal Francois, Geffroy Benjamin, Vandeputte Marc (2024). Post-larval exposure to warm temperature enhances female ratio, while starvation and photoperiod do not: The case of European seabass, Dicentrarchus labrax . Aquaculture , 586, 740758 (6p.) . https://doi.org/10.1016/j.aquaculture.2024.740758
Moroni F., Carvalho M., Di Rosa A.R., Torrecillas S., Fontanillas R., Haffray P., Allal Francois, Bajek A., Chiofalo B., Terova G., Montero D. (2024). Genetic selection and novel feeds containing single cell protein as a substitute for fishmeal in European sea bass: Effects on growth, fatty acid profile and E-sensing analysis of fillets . Aquaculture Reports , 35, 102021 (13p.) . Publisher's official version : https://doi.org/10.1016/j.aqrep.2024.102021 , Open Access version : https://archimer.ifremer.fr/doc/00881/99289/
Blaise Sophie (2024). Marbec. Une unité de recherche sur la biodiversité marine . BD . https://archimer.ifremer.fr/doc/00886/99823/

2023

Rimoldi Simona, Montero Daniel, Torrecillas Silvia, Serradell Antonio, Acosta Felix, Haffray Pierrick, Hostins Barbara, Fontanillas Ramon, Allal Francois, Bajek Aline, Terova Genciana (2023). Genetically superior European sea bass (Dicentrarchus labrax) and nutritional innovations: Effects of functional feeds on fish immune response, disease resistance, and gut microbiota . Aquaculture Reports , 33, 101747 (17p.) . Publisher's official version : https://doi.org/10.1016/j.aqrep.2023.101747 , Open Access version : https://archimer.ifremer.fr/doc/00854/96589/
Jourdan Antoine, Morvezen Romain, Enez Florian, Haffray Pierrick, Lange Adeline, Vétois Emilie, Allal Francois, Phocas Florence, Bugeon Jérôme, Dégremont Lionel, Boudry Pierre (2023). Potential of genomic selection for growth, meat content and colour traits in mixed-family breeding designs for the Pacific oyster Crassostrea gigas . Aquaculture , 576, 739878 (13p.) . Publisher's official version : https://doi.org/10.1016/j.aquaculture.2023.739878 , Open Access version : https://archimer.ifremer.fr/doc/00846/95839/
Torrecillas S., Rimoldi S., Montero D., Serradell A., Acosta F., Fontanillas R., Allal Francois, Haffray P., Bajek A., Terova G. (2023). Genotype x nutrition interactions in European sea bass (Dicentrarchus labrax): Effects on gut health and intestinal microbiota . Aquaculture , 574, 739639 (22p.) . Publisher's official version : https://doi.org/10.1016/j.aquaculture.2023.739639 , Open Access version : https://archimer.ifremer.fr/doc/00835/94741/
Montero D., Carvalho M., Terova G., Fontanillas R., Serradell A., Ginés R., Tuset V., Acosta F., Rimoldi S., Bajek A., Haffray P., Allal Francois, Torrecillas S. (2023). Nutritional innovations in superior European sea bass (Dicentrarchus labrax) genotypes: Implications on fish performance and feed utilization . Aquaculture , 572, 739486 (15p.) . Publisher's official version : https://doi.org/10.1016/j.aquaculture.2023.739486 , Open Access version : https://archimer.ifremer.fr/doc/00829/94091/
Serradell Antonio, Montero Daniel, Terova Genciana, Rimoldi Simona, Makol Alex, Acosta Félix, Bajek Aline, Haffray Pierrick, Allal Francois, Torrecillas Silvia (2023). Functional Additives in a Selected European Sea Bass (Dicentrarchus labrax) Genotype: Effects on the Stress Response and Gill Antioxidant Response to Hydrogen Peroxide (H2O2) Treatment . Animals , 13(14), 2265 (20p.) . Publisher's official version : https://doi.org/10.3390/ani13142265 , Open Access version : https://archimer.ifremer.fr/doc/00846/95799/
Nati Julie J. H., Blasco Felipe R., Rodde Charles, Vergnet Alain, Allal Francois, Vandeputte Marc, McKenzie David (2023). In a marine teleost, the significance of oxygen supply for acute thermal tolerance depends upon the context and the endpoint used . Journal Of Experimental Biology , 226(11), jeb245210 (5p.) . https://doi.org/10.1242/jeb.245210
Delpuech Emilie, Vandeputte Marc, Morvezen Romain, Bestin Anastasia, Besson Mathieu, Brunier Joseph, Bajek Aline, Imarazene Boudjema, François Yoannah, Bouchez Olivier, Cousin Xavier, Poncet Charles, Morin Thierry, Bruant Jean-Sébastien, Chatain Beatrice, Haffray Pierrick, Phocas Florence, Allal Francois (2023). Whole‐genome sequencing identifies interferon-induced protein IFI6/IFI27-like as a strong candidate gene for VNN resistance in European sea bass . Genetics Selection Evolution , 55(1), 30 (12p.) . Publisher's official version : https://doi.org/10.1186/s12711-023-00805-2 , Open Access version : https://archimer.ifremer.fr/doc/00835/94739/
Calduch-Giner Josep, Rosell-Moll Enrique, Besson Mathieu, Vergnet Alain, Bruant Jean-Sébastien, Clota Frederic, Holhorea Paul George, Allal Francois, Vandeputte Marc, Pérez-Sánchez Jaume (2023). Changes in transcriptomic and behavioural traits in activity and ventilation rates associated with divergent individual feed efficiency in gilthead sea bream (Sparus aurata) . Aquaculture Reports , 29, 101476 (11p.) . Publisher's official version : https://doi.org/10.1016/j.aqrep.2023.101476 , Open Access version : https://archimer.ifremer.fr/doc/00817/92869/

2022

Jourdan Antoine, Morvezen Romain, Haffray Pierrick, Boudry Pierre, Allal Francois, Maurouard Elise, Marquis Florent, Heurtebise Serge, Phocas Florence, Degremont Lionel (2022). First Characterization Of Genomic Architecture For Disease Resistance In Crassostrea Gigas To Single And Dual Exposition To OsHV-1 And Vibrio Aestuarianus . ISGA XIV - XIV International Symposium on Genetics in Aquaculture. 27 november-02 December 2022, Puerto Varas, Chile .
Goikoetxea Alexander, Servili Arianna, Houdelet Camille, Mouchel Olivier, Hermet Sophie, Clota Frederic, Aerts Johan, Fernandino Juan Ignacio, Allal Francois, Vandeputte Marc, Blondeau-Bidet Eva, Geffroy Benjamin (2022). Natural cortisol production is not linked to the sexual fate of European sea bass . Fish Physiology And Biochemistry , 48(4), 1117-1135 . Publisher's official version : https://doi.org/10.1007/s10695-022-01104-1 , Open Access version : https://archimer.ifremer.fr/doc/00787/89921/
Clota Frederic, Geffroy Benjamin, Vergnet Alain, Blanc Marie-Odile, Lallement Stephane, Ruelle Francois, Goikoetxea Alexander, Leitwein Maeva, Allal Francois, Vandeputte Marc (2022). Les hautes températures en phase juvénile favorisent la croissance et la différenciation femelle du bar (Dicentrarchus labrax L.) . 7èmes JRFP - Journées de la Recherche Piscicole. 05 et 06 juillet 2022 , Paris .
Allal Francois (2022). La génétique pour relever le défi de la durabilité de la pisciculture . HDR.
Besson Mathieu, Rombout Nicky, Salou Germain, Vergnet Alain, Cariou Sophie, Bruant Jean-Sébastien, Izquierdo Marisol, Bestin Anastasia, Clota Frederic, Haffray Pierrick, Allal Francois, Vandeputte Marc (2022). Potential for genomic selection on feed efficiency in gilthead sea bream (Sparus aurata), based on individual feed conversion ratio, carcass and lipid traits . Aquaculture Reports , 24, 101132 (13p.) . Publisher's official version : https://doi.org/10.1016/j.aqrep.2022.101132 , Open Access version : https://archimer.ifremer.fr/doc/00772/88359/
Allal Francois, Nguyen Nguyen Hong (2022). Genomic Selection in Aquaculture Species . In Ahmadi N., Bartholomé J. (eds) 2022. Complex Trait Prediction. Methods in Molecular Biology, vol 2467. Humana, New York, NY. Chap.17, pp.469-491 (Springer Science and Business Media LLC) .
Crestel Damien, Vergnet Alain, Blanc Marie-Odile, Lallement Stephane, Clota Frederic, Allal Francois, Vandeputte Marc (2022). Etude de la croissance larvaire chez trois populations naturelles de bar (Dicentrarchus labrax) soumises à quatre régimes thermiques . 7èmes JRFP - Journées de la Recherche Piscicole. 05 et 06 juillet 2022 , Paris .

2021

Geffroy Benjamin, Besson Mathieu, Sánchez-Baizán Núria, Clota Frederic, Goikoetxea Alexander, Sadoul Bastien, Ruelle Francois, Blanc Marie-Odile, Parrinello Hugues, Hermet Sophie, Blondeau-Bidet Eva, Pratlong Marine, Piferrer Francesc, Vandeputte Marc, Allal Francois (2021). Unraveling the genotype by environment interaction in a thermosensitive fish with a polygenic sex determination system . Proceedings Of The National Academy Of Sciences Of The United States Of America , 118(50), e2112660118 (12p.) . Publisher's official version : https://doi.org/10.1073/pnas.2112660118 , Open Access version : https://archimer.ifremer.fr/doc/00740/85205/
Peñaloza C., Manousaki T., Franch R., Tsakogiannis A., Sonesson A., Aslam M.L., Allal Francois, Bargelloni L., Houston R.D., Tsigenopoulos C.S. (2021). Development and testing of a combined species SNP array for the European seabass (Dicentrarchus labrax) and gilthead seabream (Sparus aurata) . Genomics , 113(4), 2096-2107 . Publisher's official version : https://doi.org/10.1016/j.ygeno.2021.04.038 , Open Access version : https://archimer.ifremer.fr/doc/00691/80347/
Griot Ronan, Allal Francois, Phocas Florence, Brard-Fudulea Sophie, Morvezen Romain, Haffray Pierrick, François Yoannah, Morin Thierry, Bestin Anastasia, Bruant Jean-Sébastien, Cariou Sophie, Peyrou Bruno, Brunier Joseph, Vandeputte Marc (2021). Optimization of Genomic Selection to Improve Disease Resistance in Two Marine Fishes, the European Sea Bass (Dicentrarchus labrax) and the Gilthead Sea Bream (Sparus aurata) . Frontiers In Genetics , 12, 665920 (14p.) . Publisher's official version : https://doi.org/10.3389/fgene.2021.665920 , Open Access version : https://archimer.ifremer.fr/doc/00718/83039/
Boudry Pierre, Allal Francois, Aslam Muhammad L., Bargelloni Luca, Bean Tim P., Brard-Fudulea Sophie, Brieuc Marine S.O., Calboli Federico C.F., Gilbey John, Haffray Pierrick, Lamy Jean-Baptiste, Morvezen Romain, Purcell Catherine, Prodöhl Paulo A., Vandeputte Marc, Waldbieser Geoffrey C., Sonesson Anna K., Houston Ross D. (2021). Current status and potential of genomic selection to improve selective breeding in the main aquaculture species of International Council for the Exploration of the Sea (ICES) member countries . Aquaculture Reports , 20, 100700 (14p.) . Publisher's official version : https://doi.org/10.1016/j.aqrep.2021.100700 , Open Access version : https://archimer.ifremer.fr/doc/00694/80581/
Geffroy Benjamin, Gesto Manuel, Clota Frederic, Aerts Johan, Darias Maria J., Blanc Marie-Odile, Ruelle Francois, Allal Francois, Vandeputte Marc (2021). Parental selection for growth and early-life low stocking density increase the female-to-male ratio in European sea bass . Scientific Reports , 11(1), 13620 (14p.) . Publisher's official version : https://doi.org/10.1038/s41598-021-93116-9 , Open Access version : https://archimer.ifremer.fr/doc/00705/81662/
Rodde Charles, de Verdal Hugues, Vandeputte Marc, Allal Francois, Nati Julie, Besson Mathieu, Blasco Felipe R, Benzie John A H, McKenzie David (2021). An investigation of links between metabolic rate and feed efficiency in European sea bass Dicentrarchus labrax . Journal Of Animal Science , 99(6), skab152 (9p.) . Publisher's official version : https://doi.org/10.1093/jas/skab152 , Open Access version : https://archimer.ifremer.fr/doc/00694/80585/
Faggion Sara, Vandeputte Marc, Vergnet Alain, Clota Frederic, Blanc Marie-Odile, Sanchez Pierre, Ruelle Francois, Allal Francois (2021). Sex dimorphism in European sea bass (Dicentrarchus labrax L.): New insights into sex-related growth patterns during very early life stages . Plos One , 16(4), e0239791 (14p.) . Publisher's official version : https://doi.org/10.1371/journal.pone.0239791 , Open Access version : https://archimer.ifremer.fr/doc/00691/80288/
Barsøe Sofie, Allal Francois, Vergnet Alain, Vandeputte Marc, Olesen Niels Jørgen, Schmidt Jacob Günther, Larsen Cathrine Agnete, Cuenca Argelia, Vendramin Niccolò (2021). Different survival of three populations of European sea bass (Dicentrarchus labrax) following challenge with two variants of nervous necrosis virus (NNV) . Aquaculture Reports , 19, 100621 (8p.) . Publisher's official version : https://doi.org/10.1016/j.aqrep.2021.100621 , Open Access version : https://archimer.ifremer.fr/doc/00678/79050/
Griot Ronan, Allal Francois, Phocas F., Brard-Fudulea S., Morvezen R., Bestin A., Haffray P., François Yoannah, Morin Thierry, Poncet C., Vergnet Alain, Cariou S., Brunier J., Bruant J.S., Peyrou B., Gagnaire P.A., Vandeputte Marc (2021). Genome-wide association studies for resistance to viral nervous necrosis in three populations of European sea bass (Dicentrarchus labrax) using a novel 57 k SNP array DlabChip . Aquaculture , 530, 735930 (10p.) . Publisher's official version : https://doi.org/10.1016/j.aquaculture.2020.735930 , Open Access version : https://archimer.ifremer.fr/doc/00648/76027/
Allal Sarah, Rabuel Valentin, Gengler Charline, Douchet Catherine, Allal Francois, Zwetyenga Narcisse (2021). Case report of osteomyelitis of the mandible in osteopetrosis and management considerations . International Journal Of Surgery Case Reports , 81, 105813 (5p.) . Publisher's official version : https://doi.org/10.1016/j.ijscr.2021.105813 , Open Access version : https://archimer.ifremer.fr/doc/00686/79816/

2020

Rodde Charles, de Verdal Hugues, Lefebvre Sebastien, Menniti Christophe, Vandeputte Marc, Clota Frederic, Allal Francois, McKenzie David, Benzie John A.H., Nahon Sarah (2020). Variations in isotope incorporation rates and trophic discrimination factors of carbon and nitrogen stable isotopes in scales from three European sea bass (Dicentrarchus labrax) populations . Journal Of Experimental Marine Biology And Ecology , 533, 151468 (10p.) . Publisher's official version : https://doi.org/10.1016/j.jembe.2020.151468 , Open Access version : https://archimer.ifremer.fr/doc/00652/76390/
Rodde Charles, Vandeputte Marc, Allal Francois, Besson Mathieu, Clota Frederic, Vergnet Alain, Benzie John A. H., de Verdal Hugues (2020). Population, Temperature and Feeding Rate Effects on Individual Feed Efficiency in European Sea Bass (Dicentrarchus labrax) . Frontiers In Marine Science , 7, 578976 (11p.) . Publisher's official version : https://doi.org/10.3389/fmars.2020.578976 , Open Access version : https://archimer.ifremer.fr/doc/00654/76614/
Duranton Maud, Allal Francois, Valiere Sophie, Bouchez Olivier, Bonhomme Francois, Gagnaire Pierre-Alexandre (2020). The contribution of ancient admixture to reproductive isolation between European sea bass lineages . Evolution Letters , 4(3), 226-242 . Publisher's official version : https://doi.org/10.1002/evl3.169 , Open Access version : https://archimer.ifremer.fr/doc/00636/74768/
Dambrine Chloe, Huret Martin, Woillez Mathieu, Pecquerie Laure, Allal Francois, Servili Arianna, de Pontual Helene (2020). Contribution of a bioenergetics model to investigate the growth and survival of European seabass in the Bay of Biscay – English Channel area . Ecological Modelling , 423, 109007 (11p.) . Publisher's official version : https://doi.org/10.1016/j.ecolmodel.2020.109007 , Open Access version : https://archimer.ifremer.fr/doc/00612/72397/
Faggion Sara, Sanchez Pierre, Vandeputte Marc, Clota Frederic, Vergnet Alain, Blanc Marie-Odile, Allal Francois (2020). Evaluation of a European sea bass (Dicentrarchus labrax L.) post-larval tagging method with ultra-small RFID tags . Aquaculture , 520, 734945 (5p.) . Publisher's official version : https://doi.org/10.1016/j.aquaculture.2020.734945 , Open Access version : https://archimer.ifremer.fr/doc/00601/71331/
Vandeputte Marc, Fraslin Clemence, Haffray Pierrick, Bestin Anastasia, Allal Francois, Kocour Martin, Prchal Martin, Dupont-Nivet Mathilde (2020). How to genetically increase fillet yield in fish: Relevant genetic parameters and methods to predict genetic gain . Aquaculture , 519, 734877 (11p.) . Publisher's official version : https://doi.org/10.1016/j.aquaculture.2019.734877 , Open Access version : https://archimer.ifremer.fr/doc/00612/72378/
Griot Ronan, Allal Francois, Brard‐fudulea S, Morvezen R, Haffray P, Phocas F, Vandeputte Marc (2020). APIS: An Auto‐Adaptive Parentage Inference Software that tolerates missing parents . Molecular Ecology Resources , 20(2), 579-590 . Publisher's official version : https://doi.org/10.1111/1755-0998.13103 , Open Access version : https://archimer.ifremer.fr/doc/00587/69866/
ICES (2020). Working Group on Application of Genetics in Fisheries and Aquaculture (WGAGFA). ICES Scientific Reports/Rapports scientifiques du CIEM , 2(73), 80pp. Publisher's official version : https://doi.org/10.17895/ices.pub.7443 , Open Access version : https://archimer.ifremer.fr/doc/00656/76821/

2019

Vandeputte Marc, Bugeon Jérôme, Bestin Anastasia, Desgranges Alexandre, Allamellou Jean-Michel, Tyran Anne-Sophie, Allal Francois, Dupont-Nivet Mathilde, Haffray Pierrick (2019). First Evidence of Realized Selection Response on Fillet Yield in Rainbow Trout Oncorhynchus mykiss, Using Sib Selection or Based on Correlated Ultrasound Measurements . Frontiers In Genetics , 10(1225), 13p. Publisher's official version : https://doi.org/10.3389/fgene.2019.01225 , Open Access version : https://archimer.ifremer.fr/doc/00599/71121/
Vandeputte Marc, Gagnaire P.‐a., Allal Francois (2019). The European sea bass: a key marine fish model in the wild and in aquaculture . Animal Genetics , 50(3), 195-206 . Publisher's official version : https://doi.org/10.1111/age.12779 , Open Access version : https://archimer.ifremer.fr/doc/00486/59752/
Faggion Sara, Vandeputte Marc, Chatain Beatrice, Gagnaire Pierre-Alexandre, Allal Francois (2019). Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L. Heredity , 122(5), 612-621 . Publisher's official version : https://doi.org/10.1038/s41437-018-0157-z , Open Access version : https://archimer.ifremer.fr/doc/00464/57609/
Besson Mathieu, Allal Francois, Chatain Beatrice, Vergnet Alain, Clota Frederic, Vandeputte Marc (2019). Combining Individual Phenotypes of Feed Intake With Genomic Data to Improve Feed Efficiency in Sea Bass . Frontiers In Genetics , 10(219), 14p. Publisher's official version : https://doi.org/10.3389/fgene.2019.00219 , Open Access version : https://archimer.ifremer.fr/doc/00486/59799/

2018

de Verdal Hugues, Komen Hans, Quillet Edwige, Chatain Beatrice, Allal Francois, Benzie John A. H., Vandeputte Marc (2018). Improving feed efficiency in fish using selective breeding: a review . Reviews In Aquaculture , 10(4), 833-851 . Publisher's official version : https://doi.org/10.1111/raq.12202 , Open Access version : https://archimer.ifremer.fr/doc/00415/52675/
Duranton Maud, Allal Francois, Fraisse Christelle, Bierne Nicolas, Bonhomme Francois, Gagnaire Pierre-Alexandre (2018). The origin and remolding of genomic islands of differentiation in the European sea bass . Nature Communications , 9(1), 2518 (11p.) . Publisher's official version : https://doi.org/10.1038/s41467-018-04963-6 , Open Access version : https://archimer.ifremer.fr/doc/00446/55750/
Palaiokostas Christos, Cariou Sophie, Bestin Anastasia, Bruant Jean-Sebastien, Haffray Pierrick, Morin Thierry, Cabon Joelle, Allal Francois, Vandeputte Marc, Houston Ross D. (2018). Genome-wide association and genomic prediction of resistance to viral nervous necrosis in European sea bass (Dicentrarchus labrax) using RAD sequencing . Genetics Selection Evolution , 50(30), 11p. Publisher's official version : https://doi.org/10.1186/s12711-018-0401-2 , Open Access version : https://archimer.ifremer.fr/doc/00445/55676/
Allal Francois, Doan Quoc Khanh, Chatain Beatrice, Vergnet Alain, Haffray Pierrick, Vandeputte Marc (2018). Could genomic evaluations predict resistance to viral nervous necrosis in wild populations of European seabass? ISGA XIII - International Symposium on Genetics in Aquaculture XIII. July 15-20 2018, Cairns, Australia.
Allal Francois, Morvezen Romain, Brard-Fudulea Sophie, Poncet Charles, Belmonte Elodie, Griot Ronan, Bruant Jean-Sébastien, Cariou Sophie, Bajek Aline, Peyrou Bruno, Vandeputte Marc, Jaimet Céline, Haffray Pierrick, Gagnaire Pierre-Alexandre (2018). Development and characterization of a 57k single nucleotide polymorphism array for European sea bass . AQUA 2018 - World Aquaculture Society Meetings. August 25-29 2018, Montpellier, France .
Allal Francois, Doan Quoc Khanh, Chatain Beatrice, Vergnet Alain, Haffray Pierrick, Vandeputte Marc (2018). Genome-wide association study and genomic evaluations for resistance to viral nervous necrosis in wild populations of European sea bass Dicentrarchus labrax . AQUA 2018 - World Aquaculture Society Meetings. August 25-29 2018, Montpellier, France .
Vandeputte Marc, Bugeon Jérôme, Bestin Anastasia, Desgranges Alexandre, Courant Sébastien, Allamellou Jean-Michel, Tyran Anne-Sophie, Allal Francois, Dupont-Nivet Mathilde, Haffray Pierrick (2018). Successful realized selection response for fillet yield in rainbow trout Oncorhynchus mykiss . AQUA 2018 - World Aquaculture Society Meetings. August 25-29 2018, Montpellier, France .
Faggion Sara, Vandeputte Marc, Chatain Beatrice, Gagnaire Pierre-Alexandre, Allal Francois (2018). Population-specific variations of the genetic architecture of sex determination in wild European sea bass . AQUA 2018 - World Aquaculture Society Meetings. August 25-29 2018, Montpellier, France .
Vandeputte Marc, Allal Francois, Anastasiadi Dafni, Vasilescu Alexandre, Geffroy Benjamin, Piferrer Francesc, Chatain Beatrice (2018). Genomic prediction of phenotypic sex within European sea bass families: a new tool to understand and control sex ratio variations in a species with polygenic sex determination . AQUA 2018 - World Aquaculture Society Meetings. August 25-29 2018, Montpellier, France .
Haffray Pierrick, Bestin Anastasia, Enez Florian, Courant Sébastien, Guemene Daniel, Desgranges Alexandre, Allal Francois, Dupont-Nivet Mathilde, Vandeputte Marc (2018). Genetic parameters of resistance to gastroenteritis (RTGE) and rainbow trout fry syndrome (RTFS) in rainbow trout Oncorhynchus mykiss and their genetic correlations with production traits . AQUA 2018 - World Aquaculture Society Meetings. August 25-29 2018, Montpellier, France .
Anastasiadi Dafni, Vandeputte Marc, Sanchez-Baizan Nuria, Allal Francois, Piferrer Francesc (2018). Dynamic epimarks in sex-related genes predict gonad phenotype in the European sea bass, a fish with mixed genetic and environmental sex determination . Epigenetics , 13(9), 988-1011 . Publisher's official version : https://doi.org/10.1080/15592294.2018.1529504 , Open Access version : https://archimer.ifremer.fr/doc/00470/58123/
Besson Mathieu, Allal Francois, Chatain Beatrice, Vergnet Alain, Clota Frederic, Ferrari Sebastien, Vandeputte Marc (2018). Estimation of genetic parameters of feed conversion ratio based on individual phenotypes and genomic data in sea bass . Proceedings of the World Congress on Genetics Applied to Livestock Production, vol. Species - Aquaculture 1, p. 426, 2018 (5p.) . https://archimer.ifremer.fr/doc/00446/55756/
Besson Mathieu, Allal Francois, Chatain Beatrice, Vergnet Alain, Clota Frederic, Vandeputte Marc (2018). Selective breeding on tolerance to fasting improves feed conversion ratio of sea bass . AQUA 2018 - World Aquaculture Society Meetings. August 25-29 2018, Montpellier, France .

2017

Hillen J. E. J., Coscia I., Vandeputte Marc, Herten K., Hellemans B., Maroso F., Vergnet Alain, Allal Francois, Maes G. E., Volckaert F. A. M. (2017). Estimates of genetic variability and inbreeding in experimentally selected populations of European sea bass . Aquaculture , 479, 742-749 . Publisher's official version : https://doi.org/10.1016/j.aquaculture.2017.07.012 , Open Access version : https://archimer.ifremer.fr/doc/00392/50314/
Khanh Doan Quoc, Vandeputte Marc, Chatain Beatrice, Haffray Pierrick, Vergnet Alain, Breuil Gilles, Allal Francois (2017). Genetic variation of resistance to Viral Nervous Necrosis and genetic correlations with production traits in wild populations of the European sea bass ( Dicentrarchus labrax ) . Aquaculture , 478, 1-8 . Publisher's official version : https://doi.org/10.1016/j.aquaculture.2017.05.011 , Open Access version : https://archimer.ifremer.fr/doc/00385/49612/
Doan Q. K., Vandeputte Marc, Chatain Beatrice, Morin T, Allal Francois (2017). Viral encephalopathy and retinopathy in aquaculture: a review . Journal Of Fish Diseases , 40(5), 717-742 . Publisher's official version : https://doi.org/10.1111/jfd.12541 , Open Access version : https://archimer.ifremer.fr/doc/00350/46132/
Vandeputte Marc, Puledda Antonio, Tyran Anne Sophie, Bestin Anastasia, Coulombet Celine, Bajek Aline, Baldit Gwenaelle, Vergnet Alain, Allal Francois, Bugeon Jerome, Haffray Pierrick (2017). Investigation of morphological predictors of fillet and carcass yield in European sea bass (Dicentrarchus labrax) for application in selective breeding . Aquaculture , 470, 40-49 . Publisher's official version : https://doi.org/10.1016/j.aquaculture.2016.12.014 , Open Access version : https://archimer.ifremer.fr/doc/00361/47217/
Doan Quoc Khanh, Vandeputte Marc, Chatain Beatrice, Vergnet Alain, Breuil Gilles, Haffray Pierrick, Allal Francois (2017). Genetic variation of resistance to viral nervous necrosis and genetic correlations with production traits in wild populations of the European Sea Bass . AE2017 - Aquaculture Europe 2017. October 17-20 2017, Dubrovnik, Croatia .
Besson Mathieu, Allal Francois, Chatain Beatrice, Vergnet Alain, Clota Frederic, Ferrari Sebastien, Vandeputte Marc (2017). A medium-throughput method to phenotype fish for individual feed efficiency . AE2017 - Aquaculture Europe 2017. October 17-20 2017, Dubrovnik, Croatia . https://archimer.ifremer.fr/doc/00446/55752/
Allal Francois, Ferrari Sebastien, Horri Khaled, Vergnet Alain, Benhaim David, Vandeputte Marc, Chatain Beatrice, Begout Marie-Laure (2017). Heritability of boldness and hypoxia avoidance in European Seabass, Dicentrarchus labrax . AE2017 - Aquaculture Europe 2017. October 17-20 2017, Dubrovnik, Croatia .

2016

Ferrari Sebastien, Horri Khaled, Allal Francois, Vergnet Alain, Benhaim David, Vandeputte Marc, Chatain Beatrice, Begout Marie-Laure (2016). Heritability of Boldness and Hypoxia Avoidance in European Seabass, Dicentrarchus labrax . Plos One , 11(12), e0168506 (1-16) . Publisher's official version : https://doi.org/10.1371/journal.pone.0168506 , Open Access version : https://archimer.ifremer.fr/doc/00362/47278/
Allal Francois, Vandeputte Marc, Vergnet Alain, Chatain Beatrice (2016). Genetic gain in feed efficiency in response to selection for weight loss during feed depriviation in European sea bass . AE2016 - Aquaculture Europe 16 "Food for thought". 20-23 September 2016, Edinburgh, Scotland (UK) .
Oral Münevver, Colleter Julie, Bekaert Michaël, Bartie Kerry, Taggart John B, McAndrew Brendan J, Vandeputte Marc, Allal Francois, Vergnet Alain, Chatain Beatrice, Penman David J (2016). Genome-wide verification of isogenicity of clone founders (G1) in European seabass Dicentrarchus labrax through ddRADseq . AE2016 - Aquaculture Europe 16 "Food for thought", 20-23 September 2016, Edinburgh, Scotland (UK) .
Rouyer Tristan, Bonhommeau Sylvain (2016). Appel Politique de Site 2015 : Rapport de projet Tag It Yourself (actuel projet Merlin POPSTAR) .
Hubert Jean-Noel, Allal Francois, Hervet Caroline, Ravakarivelo Monique, Jeney Zsigmond, Vergnet Alain, Guyomard Rene, Vandeputte Marc (2016). How could fully scaled carps appear in natural waters in Madagascar? Proceedings Of The Royal Society B-biological Sciences , 283(1837), 20160945 (1-8) . Publisher's official version : https://doi.org/10.1098/rspb.2016.0945 , Open Access version : https://archimer.ifremer.fr/doc/00356/46681/
Vandeputte Marc, Horri Khaled, Allal Francois, Ferrari Sebastien, Vidal Marie-Odile, Vergnet Alain, Begout Marie-Laure, Chatain Beatrice (2016). Sexe et croissance précoce chez le bar : des liens très étroits . 5èmes Journées de la Recherche Filière Piscicole. 05/07/2016 au 06/07/2016, Paris.
Allal Francois, Doan Q.K., Chatain Beatrice, Vergnet Alain, Vandeputte Marc (2016). Résistance au nodavirus chez le bar sauvage . Journées annuelles du SFAM, 17-18 mars 2016, La Grande-Motte, France .
Ferrari Sebastien, Vergnet Alain, Allal Francois, Clota Frederic, Chatain Beatrice, Vandeputte Marc (2016). Efficacité alimentaire individuelle chez le bar . Journée technique du SYSAAF, 25 February 2016, Paris, France .
Vandeputte Marc, Puledda Antonio, Tyran Anne-Sophie, Bestin Anastasia, Coulombet Céline, Bajek Aline, Baldit Gwenaëlle, Vergnet Alain, Allal Francois, Bugeon Jérôme, Haffray Pierrick (2016). Prédicteurs morphologiques du rendement chez le bar: projet BAR3D . Journée technique du SYSAAF, 25 February 2016, Paris, France .

2015

Allal Francois, Doan Q.K., Chatain Beatrice, Vergnet Alain, Vandeputte Marc (2015). Combining vitassign and colony for pedigree reconstruction in a case of factorial mating with missing parental genotypes . Aquaculture Europe 2015 - Aquaculture, Nature and Society. Rotterdam, The Netherlands, October 20-23, 2015. p. 26-27. https://archimer.ifremer.fr/doc/00306/41694/
Vandeputte Marc, Horri Khaled, Allal Francois, Ferrari Sebastien, Vidal Marie-Odile, Ruelle Francois, Vergnet Alain, Begout Marie-Laure, Chatain Beatrice (2015). The phenotypic and genetic links between early individual growth and sex determination in European sea bass . Aquaculture Europe 2015 - Aquaculture, Nature and Society, October 20-23 2015, Rotterdam, The Netherlands .
Allal Francois, Doan Q.K., Chatain Beatrice, Vergnet Alain, Vandeputte Marc (2015). Combining Vitassign and Colony for pedigree reconstruction in a case of factorial mating with missing parental genotypes . Aquaculture 2015, Cutting Edge Science in Aquaculture, August 23-26 2015, Montpellier, France . https://archimer.ifremer.fr/doc/00281/39180/
Allal Francois, Ferrari Sebastien, Horri Khaled, Vidal Marie-Odile, Ruelle Francois, Vandeputte Marc, Chatain Beatrice, Begout Marie-Laure (2015). Heritability of coping styles in farmed European seabass . ISGA XII - International Symposium on Genetics in Aquaculture XII. June 21-27 2015, Santiago de Compostela, Spain .
Doan Q.K., Vandeputte Marc, Chatain Beatrice, Vergnet Alain, Allal Francois (2015). Combining vitassign and colony: an efficient practical procedure for parental assignment with missing parents . ISGA XII - International Symposium on Genetics in Aquaculture XII, June 21-27 2015, Santiago de Compostela, Spain . https://archimer.ifremer.fr/doc/00281/39196/
Vandeputte Marc, Horri Khaled, Allal Francois, Ferrari Sebastien, Vidal Marie-Odile, Ruelle Francois, Begout Marie-Laure, Chatain Beatrice (2015). Does early growth play a role in the sex determination of European seabass Dicentrarchus labrax? ISGA XII - International Symposium on Genetics in Aquaculture XII, June 21-27 2015, Santiago de Compostela, Spain .
Ferrari Sebastien, Horri Khaled, Allal Francois, Vandeputte Marc, Chatain Beatrice, Begout Marie-Laure (2015). Héritabilité du coping style chez le bar . SFECA 2015 -Colloque national de la Société française pour l'étude du comportement animal. 21-23 avril 2015, Strasbourg .
Ferrari Sebastien, Allal Francois, Horri Khaled, Chatain Beatrice, Vandeputte Marc, Begout Marie-Laure (2015). La personnalité du bar... un caractère héritable . Journées annuelles du SFAM, 18-20 mars 2015, La Grande Motte, France .

2014

Allal Francois, Vandeputte Marc, Doan K, Vergnet Alain, Chatain Beatrice (2014). Etudier l'architecture génétique du bar pour une aquaculture durable . Rencontres scientifiques du département RBE, 9-10 décembre 2014, Nantes, France .
Chatain Beatrice, Vandeputte Marc, Vergnet Alain, Allal Francois (2014). Efficacité alimentaire et résistance au jeûne chez les poissons: bilan de 7 années de recherche . Rencontres scientifiques du département RBE, 9-10 décembre 2014, Nantes, France .


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