Muller Alexandre, Auby Isabelle, Becheler Ronan, Boye Aurelien, Chevalier Mathieu, Droual Gabin, Dubois Stanislas, Fournier Jérôme, Nunes Flávia L. D. (2022). Functional traits of benthic marine invertebrates associated with eelgrass meadows in France . SEANOE . https://doi.org/10.17882/87709

Gutierrez Luis, Polidoro Beth, Obura David, Cabada-Blanco Francoise, Linardich Christi, Pettersson Emma, Pearce-Kelly Paul, Kemppinen Krista, Alvarado Juan Jose, Alvarez-Filip Lorenzo, Banaszak Anastazia, Casado De Amezua Pilar, Crabbe James, Croquer Aldo, Feingold Joshua, Goergen Elizabeth, Goffredo Stefano, Hoeksema Bert, Huang Danwei, Kennedy Emma, Kersting Diego, Kitahara Marcelo, Kružić Petar, Miller Margaret, Nunes Flavia, Quimbayo Juan Pablo, Rivera-Sosa Andrea, Rodríguez-Martínez Rosa, Santodomingo Nadia, Sweet Michael, Vermeij Mark, Villamizar Estrella, Aeby Greta, Alliji Khatija, Bayley Daniel, Couce Elena, Cowburn Benjamin, Nuñez Lendo C. Isabel, Porter Sean, Samimi-Namin Kaveh, Shlesinger Tom, Wilson Bryan (2024). Half of Atlantic reef-building corals at elevated risk of extinction due to climate change and other threats . Plos One , 19(11), e0309354 (23p.) . Publisher's official version : https://doi.org/10.1371/journal.pone.0309354 , Open Access version : https://archimer.ifremer.fr/doc/00925/103656/

Hellec Elisabeth, Nunes Flavia, Corporeau Charlotte, Cormier Alexandre (2024). KiNext: a portable and scalable workflow for the identification and classification of protein kinases . Bmc Bioinformatics , 25(1), 338 (11p.) . Publisher's official version : https://doi.org/10.1186/s12859-024-05953-w , Open Access version : https://archimer.ifremer.fr/doc/00917/102906/

Clement Raphael, Marzloff Martin, Nunes Flavia, Rousseau Coralie, Becheler Ronan, Bajjouk Touria, Fournier-Sowinski Jérôme, Cugier Philippe (2024). Investigating the hydrodynamic connectivity of eelgrass Zostera marina population along French Atlantic coast to help management and conservation effort . AMEMR 2024 - 7th Conference of Advances in Marine Ecosystem Modelling Research. July 8 – 12, 2024, Plymouth, United Kingdom .

Pepin Jean-Francois, Curd Amelia, Massé Cécile, Bouquet Anne Lise, Daffe Cerise, Droual Gabin, Dubreuil Christine, Nunes Flavia, Roche Emilie, Antajan Elvire, Sauriau Pierre-Guy (2024). Detecting two marine non-indigenous species in the Bay of Biscay threatening biodiversity and shellfish farming from the French coast using eDNA and molecular approaches . ISOBAY 18 – XVIIIe International Symposium on Oceanography of the Bay of Biscay. June 5-7, 2024, , La Rochelle, France . https://archimer.ifremer.fr/doc/00895/100660/

Bajjouk Touria, Nunes Flavia, Munaron Dominique, Gonzalez Jean-Louis, Muller Alexandre, Le Monier Pauline, Auby Isabelle (2024). INdices de DIversité taxonomique, fonctionnelle et GENétique et Etat de contamination des herbiers de zostères . Approche Biogéographique. Rapport final version 1.1. DYNECO/LEBCO/202306-02TB, 127 p. https://doi.org/10.13155/98689

Muller Alexandre, Dubois Stanislas, Boyé Aurélien, Becheler Ronan, Droual Gabin, Chevalier Mathieu, Pasquier Marine, Roudaut Loïg, Fournier‐sowinski Jérôme, Auby Isabelle, Nunes Flavia (2023). Environmental filtering and biotic interactions act on different facets of the diversity of benthic assemblages associated with eelgrass . Ecology And Evolution , 13(11), e10159 (18p.) . Publisher's official version : https://doi.org/10.1002/ece3.10159 , Open Access version : https://archimer.ifremer.fr/doc/00864/97602/

Pepin Jean-Francois (2023). Detecting two marine non-indigenous species from the French coast using eDNA and molecular approaches . ASC 2023 - ICES Annual Science Conference 2023. 11–14 September 2023 Bilbao, Spain .

Gauff Robin, Bouchoucha Marc, Curd Amelia, Droual Gabin, Evrard Justine, Gayet Nicolas, Nunes Flavia (2023). First joint morphological and molecular detection of Watersipora subatra in the Mediterranean Sea presented in an updated genus phylogeny to resolve taxonomic confusion . Aquatic Invasions , 18(3), 295-312 . Publisher's official version : https://doi.org/10.3391/ai.2023.18.3.108128 , Open Access version : https://archimer.ifremer.fr/doc/00853/96529/

Pepin Jean-Francois (2023). Detecting two marine non indigenous species from the French coast using eDNA and molecular approaches . EURL Annual Meeting of National Reference Laboratories for Mollusc Diseases. Mai 2023, La Tremblade .

Curd Amelia, Droual Gabin, Evrard Justine, Gauff Robin, Nunes Flavia, Carlier Antoine (2023). COECODIGUE. COlonisation des ECOblocs de la DIGUE d’enclôture du nouveau polder de Brest . Rapport final du projet CoEcoDigue. Annexe D n°2021-01 à la convention IFREMER/UBO/Région Bretagne (Ref/Région n° 2017-01, Ref/Ifremer n°21/1001756). 33 pages.

Gnecco Mariana, Nunes Flavia, González-Zapata Fanny L., Dueñas Luisa F., Zilberberg Carla, Lindner Alberto, Sánchez Juan A. (2023). Remarkable population structure in the tropical Atlantic lace corals Stylaster roseus (Pallas, 1766) and Stylaster blatteus (Boschma, 1961) . Coral Reefs , 42(1), 181-194 . Publisher's official version : https://doi.org/10.1007/s00338-022-02329-5 , Open Access version : https://archimer.ifremer.fr/doc/00807/91933/

David Carmen, Marzloff Martin, Knights Antony M., Cugier Philippe, Nunes Flavia, Cordier Celine, Firth Louise B., Dubois Stanislas (2022). Connectivity modelling informs metapopulation structure and conservation priorities for a reef‐building species . Diversity And Distributions , 28(10), 2056-2070 . Publisher's official version : https://doi.org/10.1111/ddi.13596 , Open Access version : https://archimer.ifremer.fr/doc/00788/89949/

Riquet Florentine, Japaud Aurélien, Nunes Flavia, Serrano Xaymara M., Baker Andrew C., Bezault Etienne, Bouchon Claude, Fauvelot Cécile (2022). Complex spatial patterns of genetic differentiation in the Caribbean mustard hill coral Porites astreoides . Coral Reefs , 41(3), 813-828 . https://doi.org/10.1007/s00338-021-02157-z

Teschima Mariana M., Zilberberg Carla, Nunes Flavia (2022). Strong genetic differentiation demarks populations of Favia across biogeographic regions of the Atlantic Ocean . Coral Reefs , 41(3), 523-534 . https://doi.org/10.1007/s00338-021-02203-w

Curd Amelia, Droual Gabin, Dubois Stanislas, Gauff Robin, Nunes Flavia, Taormina Bastien, Carlier Antoine (2022). Trialling 100 large-scale intertidal rock pools as an eco-engineering solution . Marineff International Conference 2022. 3rd-5th May 2022, Epron, France .

Tiralongo Francesco, Akyol Okan, Al Mabruk Sara Aa, Battaglia Pietro, Beton Damla, Bitlis Banu, Borg Joseph A, Bouchoucha Marc, Cinar Melih Ertan, Crocetta Fabio, Dragičević Branko, Dulcic Jakov, Evangelopoulos Athanasios, Evans Julian, Fortic Ana, Gauff Robin Pm, Georgiadis Constantinos G, Gökoğlu Mehmet, Grech Daniele, Guy-Haim Tamar, Huseyinoglu Mehmet Fatih, Lombardo Andrea, Marletta Giuliana, Mastrototaro Francesco, Montesanto Federica, Nunes Flavia, Ozgul Aytac, Öztürk Bilal, Rammou Dimitra-Lida, Scuderi Danilo, Terbiyik Kurt Tuba, Trainito Egidio, Trkov Domen, Ulman Aylin, Unal Vahdet, Velasquez Ximena (2022). New Alien Mediterranean Biodiversity Records (August 2022) . Mediterranean Marine Science , 23(3), 725-747 . Publisher's official version : https://doi.org/10.12681/mms.31228 , Open Access version : https://archimer.ifremer.fr/doc/00792/90366/

Giovos Ioannis, Barash Adi, Barone Monica, Barría Claudio, Borme Diego, Brigaudeau Cecile, Charitou Anastasia, Brito Cristina, Currie Jock, Dornhege Mareike, Endrizzi Lara, Forsberg Kerstin, Jung Armelle, Kleitou Periklis, Macdiarmid Alison, Moutopoulos Dimitrios K., Nakagun Shotaro, Neves João, Nunes Flavia, Schröder Dorien, Thurstan Ruth H., Tull Malcolm, Tuncer Sezginer, Mazzoldi Carlotta (2021). Understanding the public attitude towards sharks for improving their conservation . Marine Policy , 134, 104811 (12p.) . https://doi.org/10.1016/j.marpol.2021.104811

Brandao Manoela, Comtet Thierry, Pouline Patrick, Cailliau Caroline, Blanchet-Aurigny Aline, Sourisseau Marc, Siano Raffaele, Memery Laurent, Viard Frédérique, Nunes Flavia (2021). Oceanographic structure and seasonal variation contribute to high heterogeneity in mesozooplankton over small spatial scales . Ices Journal Of Marine Science , 78(9), 3288-3302 . Publisher's official version : https://doi.org/10.1093/icesjms/fsab127 , Open Access version : https://archimer.ifremer.fr/doc/00705/81674/

Firth Louise B., Curd Amelia, Hawkins Stephen.J., Knights Antony M., Blaze Julie A., Burrows Michael T., Dubois Stanislas, Edwards Hugh, Foggo Andy, Gribben Paul E., Grant Lisa, Harris Daniel, Mieszkowska Nova, Nunes Flavia, Nunn Julia D., Power Anne Marie, O’riordan Ruth M., McGrath David, Simkanin Christina, O’connor Nessa E. (2021). On the diversity and distribution of a data deficient habitat in a poorly mapped region: the case of Sabellaria alveolata L. in Ireland . Marine Environmental Research , 169, 105344 (11p.) . Publisher's official version : https://doi.org/10.1016/j.marenvres.2021.105344 , Open Access version : https://archimer.ifremer.fr/doc/00693/80471/

Muller Alexandre, Poitrimol Camille, Nunes Flavia, Boye Aurelien, Curd Amelia, Desroy Nicolas, Firth Louise B, Bush Laura, Davies Andrew J, Lima Fernando P, Marzloff Martin, Meneghesso Claudia, Seabra Rui, Dubois Stanislas (2021). Musical Chairs on Temperate Reefs: Species Turnover and Replacement Within Functional Groups Explain Regional Diversity Variation in Assemblages Associated With Honeycomb Worms . Frontiers In Marine Science , 8(654141), 18p. Publisher's official version : https://doi.org/10.3389/fmars.2021.654141 , Open Access version : https://archimer.ifremer.fr/doc/00693/80506/

Nunes Flavia, Rigal François, Dubois Stanislas, Viard Frédérique (2021). Looking for diversity in all the right places? Genetic diversity is highest in peripheral populations of the reef-building polychaete Sabellaria alveolata . Marine Biology , 168(5), 63 (16p.) . Publisher's official version : https://doi.org/10.1007/s00227-021-03861-8 , Open Access version : https://archimer.ifremer.fr/doc/00689/80096/

Firth Louise B, Harris Daniel, Blaze Julie A, Marzloff Martin, Boye Aurelien, Miller Peter I, Curd Amelia, Vasquez Mickael, Dunn Julia D, O'Connor Nessa E, Power Anne-Marie, Mieszkowska Nova, O’riordan Ruth M, Burrows Michael T, Bricheno Lucy M, Knights Anthony M, Nunes Flavia, Bordeyne François, Bush Laura E, Byers James E, David Carmen, Davies Andrew J, Dubois Stanislas, Edwards Hugh, Foggo Andy, Grant Lisa, Mattias Green Ja, Gribben Paul E, Lima Fernado P, McGrath David, Noel Laure Mlj, Seabra Rui, Simkanin Christina, Hawkins Stephen J (2021). Specific niche requirements underpin multidecadal range edge stability, but may introduce barriers for climate change adaptation . Diversity And Distributions , 27(4), 668-683 . Publisher's official version : https://doi.org/10.1111/ddi.13224 , Open Access version : https://archimer.ifremer.fr/doc/00677/78938/

Muir Anna P., Dubois Stanislas, Ross Rebecca E., Firth Louise B., Knights Antony M., Lima Fernando P., Seabra Rui, Corre Erwan, Le Corguillé Gildas, Nunes Flavia (2020). Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.) . Bmc Evolutionary Biology , 20(1), 100 (16p.) . Publisher's official version : https://doi.org/10.1186/s12862-020-01658-9 , Open Access version : https://archimer.ifremer.fr/doc/00643/75538/

Curd Amelia, Pernet Fabrice, Corporeau Charlotte, Delisle Lizenn, Firth Louise B., Nunes Flavia, Dubois Stanislas (2019). Connecting organic to mineral: How the physiological state of an ecosystem-engineer is linked to its habitat structure . Ecological Indicators , 98, 49-60 . Publisher's official version : https://doi.org/10.1016/j.ecolind.2018.10.044 , Open Access version : https://archimer.ifremer.fr/doc/00464/57608/

Teschima Mariana M., Garrido Amana, Paris Alexandra, Nunes Flavia, Zilberberg Carla (2019). Biogeography of the endosymbiotic dinoflagellates (Symbiodiniaceae) community associated with the brooding coral Favia gravida in the Atlantic Ocean . Plos One , 14(3), e0213519 (18p.) . Publisher's official version : https://doi.org/10.1371/journal.pone.0213519 , Open Access version : https://archimer.ifremer.fr/doc/00484/59602/

Laborel-Deguen Francoise, Castro Clovis B., Nunes Flavia, Pires Debora O. (2019). Recifes Brasileiros: o Legado de Laborel . Museu Nacional. https://archimer.ifremer.fr/doc/00588/70007/

Wessel Nathalie, Martin Sophie, Badou Aicha, Dubois Philippe, Huchette Sylvain, Julia Vivien, Nunes Flavia, Harney Ewan, Paillard Christine, Auzoux-Bordenave Stephanie (2018). Effect of CO2–induced ocean acidification on the early development and shell mineralization of the European abalone (Haliotis tuberculata) . Journal Of Experimental Marine Biology And Ecology , 508, 52-63 . Publisher's official version : https://doi.org/10.1016/j.jembe.2018.08.005 , Open Access version : https://archimer.ifremer.fr/doc/00454/56532/

Peluso L., Tascheri V., Nunes Flavia, Castro C. B., Pires D. O., Zilberberg Carla (2018). Contemporary and historical oceanographic processes explain genetic connectivity in a Southwestern Atlantic coral . Scientific Reports , 8(1), 2684 (1-12) . Publisher's official version : https://doi.org/10.1038/s41598-018-21010-y , Open Access version : https://archimer.ifremer.fr/doc/00426/53725/

Arrigoni Roberto, Vacherie Benoit, Benzoni Francesca, Stefani Fabrizio, Karsenti Eric, Jaillon Olivier, Not Fabrice, Nunes Flavia, Payri Claude, Wincker Patrick, Barbe Valerrie (2017). A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications . Molecular Ecology Resources , 17(5), 1054-1071 . https://doi.org/10.1111/1755-0998.12640

de Souza Julia N., Nunes Flavia, Zilberberg Carla, Sanchez Juan A., Migotto Alvaro E., Hoeksema Bert W., Serrano Xaymara M., Baker Andrew C., Lindner Alberto (2017). Contrasting patterns of connectivity among endemic and widespread fire coral species (Millepora spp.) in the tropical Southwestern Atlantic . Coral Reefs , 36(3), 701-716 . https://doi.org/10.1007/s00338-017-1562-0

Nunes Flavia, Van Wormhoudt Alain, Faroni-Perez Larisse, Fournier Jerome (2017). Phylogeography of the reef-building polychaetes of the genus Phragmatopoma in the western Atlantic Region . Journal Of Biogeography , 44(7), 1612-1625 . Publisher's official version : https://doi.org/10.1111/jbi.12938 , Open Access version : https://archimer.ifremer.fr/doc/00363/47376/

Zibrowius Helmut, Wirtz Peter, Nunes Flavia, Hoeksema Bert W., Benzoni Francesca (2017). Shallow-water scleractinian corals of Ascension Island, Central South Atlantic . Journal Of The Marine Biological Association Of The United Kingdom , 97(4), 713-725 . https://doi.org/10.1017/S0025315414001465

Hoeksema Bert W., Nunes Flavia, Lindner Alberto, de Souza Julia Nunes (2017). Millepora alcicornis (Hydrozoa: Capitata) at Ascension Island: confirmed identity based on morphological and molecular analyses . Journal Of The Marine Biological Association Of The United Kingdom , 97(4), 709-712 . https://doi.org/10.1017/S0025315414001283

Dubief Bruno, Nunes Flavia, Basuyaux Olivier, Paillard Christine (2017). Immune priming and portal of entry effectors improve response to vibrio infection in a resistant population of the European abalone . Fish & Shellfish Immunology , 60, 255-264 . Publisher's official version : https://doi.org/10.1016/j.fsi.2016.11.017 , Open Access version : https://archimer.ifremer.fr/doc/00357/46800/

Muir Anna, Nunes Flavia, Dubois Stanislas, Pernet Fabrice (2016). Lipid remodelling in the reef-building honeycomb worm, Sabellaria alveolata, reflects acclimation and local adaptation to temperature . Scientific Reports , 6(35669), 1-10 . Publisher's official version : https://doi.org/10.1038/srep35669 , Open Access version : https://archimer.ifremer.fr/doc/00354/46551/

Harney Ewan, Dubief Bruno, Boudry Pierre, Basuyaux Olivier, Schilhabel Markus B., Huchette Sylvain, Paillard Christine, Nunes Flavia (2016). De novo assembly and annotation of the European abalone Haliotis tuberculata transcriptome . Marine Genomics , 28, 11-16 . Publisher's official version : https://doi.org/10.1016/j.margen.2016.03.002 , Open Access version : https://archimer.ifremer.fr/doc/00318/42940/

Harney Ewan, Artigaud Sebastien, Le Souchu Pierrick, Miner Philippe, Corporeau Charlotte, Essid Hafida, Pichereau Vianney, Nunes Flavia (2016). Non-additive effects of ocean acidification in combination with warming on the larval proteome of the Pacific oyster, Crassostrea gigas . Journal Of Proteomics , 135, 151-161 . Publisher's official version : https://doi.org/10.1016/j.jprot.2015.12.001 , Open Access version : https://archimer.ifremer.fr/doc/00299/40985/

Nunes Flavia, Aquilina Luc, de Ridder Jo, Francez Andre-Jean, Quaiser Achim, Caudal Jean-Pierre, Vandenkoonhuyse Philippe, Dufresne Alexis, Nunes (2015). Time-scales of hydrological forcing on the geochemistry and bacterial community structure of temperate peat soils . Scientific Reports , 5(14612), 1-11 . Publisher's official version : https://doi.org/10.1038/srep14612 , Open Access version : https://archimer.ifremer.fr/doc/00285/39668/

Budd Ann F., Nunes Flavia, Weil Ernesto, Pandolfi John M. (2012). Polymorphism in a common Atlantic reef coral (Montastraea cavernosa) and its long-term evolutionary implications . Evolutionary Ecology , 26(2), 265-290 . https://doi.org/10.1007/s10682-010-9460-8

Nunes Flavia, Norris Richard D., Knowlton Nancy (2011). Long Distance Dispersal and Connectivity in Amphi-Atlantic Corals at Regional and Basin Scales . Plos One , 6(7), e22298 (1-12) . Publisher's official version : https://doi.org/10.1371/journal.pone.0022298 , Open Access version : https://archimer.ifremer.fr/doc/00358/46904/

Nunes Flavia, Norris R. D., Knowlton N. (2009). Implications of isolation and low genetic diversity in peripheral populations of an amphi-Atlantic coral . Molecular Ecology , 18(20), 4283-4297 . https://doi.org/10.1111/j.1365-294X.2009.04347.x

Knowlton Nancy, Nunes Flavia (2008). Atlantic Corals—Least of our Concerns? Science , Science eLetter .

Nunes Flavia, Fukami H., Vollmer S. V., Norris R. D., Knowlton N. (2008). Re-evaluation of the systematics of the endemic corals of Brazil by molecular data . Coral Reefs , 27(2), 423-432 . https://doi.org/10.1007/s00338-007-0349-0

Nunes Flavia, Norris Rd (2006). Abrupt reversal in ocean overturning during the Palaeocene/Eocene warm period . Nature , 439(7072), 60-63 . https://doi.org/10.1038/nature04386