Yann Reynaud

Laboratoire Sante Environnement Microbiologie (PDG-RBE-MASAE-LSEM)

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+33 (0)2 40 37 40 87

Employer : Ifremer

Site : Nantes

Postal address : Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03

URL : https://annuaire.ifremer.fr/cv/29600/en/

ORCID orcid icon : 0000-0002-1966-7249



Dereeper Alexis, Gruel Gaëlle, Pot Matthieu, Couvin David, Barbier Elodie, Bastian Sylvaine, Bambou Jean-Christophe, Gelu-Simeon Moana, Ferdinand Séverine, Guyomard-Rabenirina Stéphanie, Passet Virginie, Martino Frederic, Piveteau Pascal, Reynaud Yann, Rodrigues Carla, Roger Pierre-Marie, Roy Xavier, Talarmin Antoine, Tressieres Benoit, Valette Marc, Brisse Sylvain, Breurec Sébastien (2022). Limited Transmission of Klebsiella pneumoniae among Humans, Animals, and the Environment in a Caribbean Island, Guadeloupe (French West Indies) . Microbiology Spectrum , 10(5), e01242-22 (15p.) . Publisher's official version : https://doi.org/10.1128/spectrum.01242-22 , Open Access version : https://archimer.ifremer.fr/doc/00800/91237/
Pot Matthieu, Reynaud Yann, Couvin David, Dereeper Alexis, Ferdinand Séverine, Bastian Sylvaine, Foucan Tania, Pommier Jean-David, Valette Marc, Talarmin Antoine, Guyomard-Rabenirina Stéphanie, Breurec Sébastien (2022). Emergence of a Novel Lineage and Wide Spread of a blaCTX-M-15/IncHI2/ST1 Plasmid among Nosocomial Enterobacter in Guadeloupe . Antibiotics-basel , 11(10), 1443 (20p.) . Publisher's official version : https://doi.org/10.3390/antibiotics11101443 , Open Access version : https://archimer.ifremer.fr/doc/00799/91098/
Le Fur Ines, Bruneau Audrey, Deborde Jonathan, Guesdon Stephane, Gueux Aurore, Piraud Aude (2022). Qualité du Milieu Marin Littoral. Bulletin de la surveillance 2021. Départements de Charente-Maritime et de Vendée (sud) . ODE/LITTORAL/LER-PC/22.004 . https://doi.org/10.13155/90555
Serais Ophelie, Munaron Dominique, Caillard Elise, Cimiterra Nicolas, Gianaroli Camille, Lagarde Franck (2022). Qualité du Milieu Marin Littoral. Bulletin de la surveillance 2021. Région Occitanie - Départements des Pyrénées Orientales, de l’Aude, de l’Hérault, du Gard . ODE/UL/LER/LR/22.002 . https://archimer.ifremer.fr/doc/00783/89500/
Le Fur Ines, Piraud Aude, Guesdon Stephane, Lemoine Maud, Neaud-Masson Nadine, Rocq Sophie, Reynaud Yann, Bruneau Audrey (2022). Demande d'avis concernant les points de suivi REMI / REPHYTOX moules de bouchot. Transformation de lieux ponctuels en lieux surfaciques . DDTM 17 - Direction Départementale des Territoires et de la Mer de Charente-Maritime, Service des activités maritimes, La Rochelle , Ref. ODE/LITTORAL/LER/PC-22.006 - Expertise Ifremer N°22-016 , 6p. https://archimer.ifremer.fr/doc/00783/89511/
Moco Vincent, Cazenave Damien, Garnier Maëlle, Pot Matthieu, Marcelino Isabel, Talarmin Antoine, Guyomard-Rabenirina Stéphanie, Breurec Sébastien, Ferdinand Séverine, Dereeper Alexis, Reynaud Yann, Couvin David (2022). getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories . Bmc Bioinformatics , 23(1), 268 (11p.) . Publisher's official version : https://doi.org/10.1186/s12859-022-04809-5 , Open Access version : https://archimer.ifremer.fr/doc/00788/89999/
Couvin David, Dereeper Alexis, Meyer Damien F, Noroy Christophe, Gaete Stanie, Bhakkan Bernard, Poullet Nausicaa, Gaspard Sarra, Bezault Etienne, Marcelino Isabel, Pruneau Ludovic, Segretier Wilfried, Stattner Erick, Cazenave Damien, Garnier Maëlle, Pot Matthieu, Tressières Benoît, Deloumeaux Jacqueline, Breurec Sébastien, Ferdinand Séverine, Gonzalez-Rizzo Silvina, Reynaud Yann, Mulder Nicola (2022). KaruBioNet: a network and discussion group for a better collaboration and structuring of bioinformatics in Guadeloupe (French West Indies) . Bioinformatics Advances , 2(1https://w), vbac010 (7p.) . Publisher's official version : https://doi.org/10.1093/bioadv/vbac010 , Open Access version : https://archimer.ifremer.fr/doc/00771/88297/
Couvin David, Cervera-Marzal Inaki, David Audrey, Reynaud Yann, Rastogi Nalin (2022). SITVITBovis-a publicly available database and mapping tool to get an improved overview of animal and human cases caused by Mycobacterium bovis . Database-the Journal Of Biological Databases And Curation , 2022(2022), baab081 (8p.) . Publisher's official version : https://doi.org/10.1093/database/baab081 , Open Access version : https://archimer.ifremer.fr/doc/00771/88273/


Pot Matthieu, Ducat Celia, Reynaud Yann, Couvin David, Ferdinand Severine, Breurec Sebastien, Talarmin Antoine, Guyomard-Rabenirina Stephanie (2021). Draft Genome Sequence of Enterobacter oligotrophicus, Isolated from the Microbiome of a Lizard in the Caribbean . Microbiology Resource Announcements , 10(35), e00602-21 (3p.) . Publisher's official version : https://doi.org/10.1128/MRA.00602-21 , Open Access version : https://archimer.ifremer.fr/doc/00771/88275/
Pot Matthieu, Reynaud Yann, Couvin David, Ducat Celia, Ferdinand Severine, Gravey Francois, Gruel Gaelle, Guerin Francois, Malpote Edith, Breurec Sebastien, Talarmin Antoine, Guyomard-Rabenirina Stephanie (2021). Wide Distribution and Specific Resistance Pattern to Third-Generation Cephalosporins of Enterobacter cloacae Complex Members in Humans and in the Environment in Guadeloupe (French West Indies) . Frontiers In Microbiology , 12, 628058 (14p.) . Publisher's official version : https://doi.org/10.3389/fmicb.2021.628058 , Open Access version : https://archimer.ifremer.fr/doc/00771/88277/
Pascal Pierre-Yves, Reynaud Yann, Poulin Elie, de Ridder Chantal, Saucede Thomas (2021). Feeding in spatangoids: the case of Abatus Cordatus in the Kerguelen Islands (Southern Ocean) . Polar Biology , 44(4), 795-808 . https://doi.org/10.1007/s00300-021-02841-4
Pot Matthieu, Guyomard-Rabenirina Stephanie, Couvin David, Ducat Celia, Enouf Vincent, Ferdinand Severine, Gruel Gaelle, Malpote Edith, Talarmin Antoine, Breurec Sebastien, Reynaud Yann (2021). Dissemination of Extended-Spectrum-β-Lactamase-Producing Enterobacter cloacae Complex from a Hospital to the Nearby Environment in Guadeloupe (French West Indies): ST114 Lineage Coding for a Successful IncHI2/ST1 Plasmid . Antimicrobial Agents And Chemotherapy , 65(3), e02146-20 (12p.) . Publisher's official version : https://doi.org/10.1128/AAC.02146-20 , Open Access version : https://archimer.ifremer.fr/doc/00771/88292/
Hery Lyza, Guidez Amandine, Durand Audrey-Anne, Delannay Christelle, Normandeux-Guimond Josiann, Reynaud Yann, Issaly Jean, Goindin Daniella, Legrave Gregory, Gustave Joel, Raffestin Stephanie, Breurec Sebastien, Constant Philippe, Dusfour Isabelle, Guertin Claude, Vega-Rua Anubis (2021). Natural Variation in Physicochemical Profiles and Bacterial Communities Associated withAedes aegyptiBreeding Sites and Larvae on Guadeloupe and French Guiana . Microbial Ecology , 81(1), 93-109 . Publisher's official version : https://doi.org/10.1007/s00248-020-01544-3 , Open Access version : https://archimer.ifremer.fr/doc/00771/88291/


Guyomard-Rabenirina Stephanie, Reynaud Yann, Pot Matthieu, Albina Emmanuel, Couvin David, Ducat Celia, Gruel Gaelle, Ferdinand Severine, Legreneur Pierre, Le Hello Simon, Malpote Edith, Sadikalay Syndia, Talarmin Antoine, Breurec Sebastien (2020). Antimicrobial Resistance in Wildlife in Guadeloupe (French West Indies): Distribution of a Singlebla(CTX-M-1)/IncI1/ST3 Plasmid Among Humans and Wild Animals . Frontiers In Microbiology , 11, 1524 (11p.) . Publisher's official version : https://doi.org/10.3389/fmicb.2020.01524 , Open Access version : https://archimer.ifremer.fr/doc/00771/88293/
Reynaud Yann, Ducat Celia, Talarmin Antoine, Marcelino Isabel (2020). Cartography of Free-Living Amoebae in Soil in Guadeloupe (French West Indies) Using DNA Metabarcoding . Pathogens , 9(6), 440 (13p.) . Publisher's official version : https://doi.org/10.3390/pathogens9060440 , Open Access version : https://archimer.ifremer.fr/doc/00771/88272/
Liang Peng-Kuan, Zheng Chao, Xu Xiao-Fang, Zhao Zhe-Ze, Zhao Chang-Song, Li Chang-He, Couvin David, Reynaud Yann, Zozio Thierry, Rastogi Nalin, Sun Qun (2020). Local adaptive evolution of two distinct clades of Beijing and T families of Mycobacterium tuberculosis in Chongqing: a Bayesian population structure and phylogenetic study . Infectious Diseases Of Poverty , 9(1), 59 (9p.) . Publisher's official version : https://doi.org/10.1186/s40249-020-00674-7 , Open Access version : https://archimer.ifremer.fr/doc/00771/88284/


Breurec Sebastien, Reynau Yann, Frank Thierry, Farra Alain, Costilhes Geoffrey, Weill François-Xavier, Le Hello Simon (2019). Serotype distribution and antimicrobial resistance of human Salmonella enterica in Bangui, Central African Republic, from 2004 to 2013 . PLOS Neglected Tropical Diseases , 13(12), e0007917 (13p.) . Publisher's official version : https://doi.org/10.1371/journal.pntd.0007917 , Open Access version : https://archimer.ifremer.fr/doc/00771/88307/
Couvin David, Reynaud Yann, Rastogi Nalin (2019). Two tales: Worldwide distribution of Central Asian (CAS) versus ancestral East-African Indian (EAI) lineages of Mycobacterium tuberculosis underlines a remarkable cleavage for phylogeographical, epidemiological and demographical characteristics . Plos One , 14(7), e0219706 (20p.) . Publisher's official version : https://doi.org/10.1371/journal.pone.0219706 , Open Access version : https://archimer.ifremer.fr/doc/00771/88279/
Marcelino Isabel, Colome-Calls Nuria, Holzmuller Philippe, Lisacek Frederique, Reynaud Yann, Canals Francesc, Vachiery Nathalie (2019). Sweet and Sour Ehrlichia: Glycoproteomics and Phosphoproteomics Reveal New Players in Ehrlichia ruminantium Physiology and Pathogenesis . Frontiers In Microbiology , 10, 450 (18p.) . Publisher's official version : https://doi.org/10.3389/fmicb.2019.00450 , Open Access version : https://archimer.ifremer.fr/doc/00771/88282/


Sadikalay Syndia, Reynaud Yann, Guyomard-Rabenirina Stephanie, Falord Melanie, Ducat Celia, Fabre Laetitia, Le Hello Simon, Talarmin Antoine, Ferdinand Severine (2018). High genetic diversity of extended-spectrum β-lactamases producing Escherichia coli in feces of horses . Veterinary Microbiology , 219, 117-122 . https://doi.org/10.1016/j.vetmic.2018.04.016
Pommier De Santi Vincent, Briolant Sébastien, Mahamat Aba, Ilcinkas Carole, Blanchet Denis, de Thoisy Benoit, Reynaud Yann, Hyvert Georges, Marié Jean-Lou, Edouard Sophie, Davoust Bernard, Raoult Didier (2018). Q fever epidemic in Cayenne, French Guiana, epidemiologically linked to three-toed sloth . Comparative Immunology, Microbiology and Infectious Diseases , 56, 34-38 . https://doi.org/10.1016/j.cimid.2017.12.004


Zheng Chao, Reynaud Yann, Zhao Changsong, Zozio Thierry, Li Song, Luo Dongxia, Sun Qun, Rastogi Nalin (2017). New Mycobacterium tuberculosis Beijing clonal complexes in China revealed by phylogenetic and Bayesian population structure analyses of 24-loci MIRU-VNTRs . Scientific Reports , 7(1), 6065 (11p.) . Publisher's official version : https://doi.org/10.1038/s41598-017-06346-1 , Open Access version : https://archimer.ifremer.fr/doc/00771/88304/
Flores-Lopez Carlos A., Zenteno-Cuevas Roberto, Laniado-Laborin Rafael, Reynaud Yann, Alejandra Garcia-Ortiz Rosa, Gonzalez-Y-Merchand Jorge A., Rivera Sandra, Vazquez-Chacon Carlos A., Vaughan Gilberto, Armando Martinez-Guarneros Jose, Lorena Victoria-Cota Nelva, Cruz-Rivera Mayra, Rastogi Nalin, Muniz-Salazar Raquel (2017). Molecular epidemiology of Mycobacterium tuberculosis in Baja California, Mexico: A result of human migration? Infection Genetics And Evolution , 55, 378-383 . https://doi.org/10.1016/j.meegid.2016.07.001
Epelboin L., Bourhy P., Le Turnier P., Schaub R., Mosnier E., Berlioz-Arthaud A., Reynaud Yann, Nacher M., de Thoisy B., Carles G., Richard-Hansen C., Demar M., Picardeau M., Djossou F. (2017). Leptospirosis in French Guiana and the Guiana shield: Current knowledge in 2016 . Bulletin de la Société de pathologie exotique , 110(3), 165-179 . https://doi.org/10.1007/s13149-017-0559-9
Douine Maylis, Gozlan Rodolphe, Nacher Mathieu, Dufour Julie, Reynaud Yann, Elguero Eric, Combe Marine, Velvin Camilla J., Chevillon Christine, Berlioz-Arthaud Alain, Labbe Sylvain, Sainte-Marie Dominique, Guegan Jean-Francois, Pradinaud Roger, Couppie Pierre (2017). Mycobacterium ulcerans infection (Buruli ulcer) in French Guiana, South America, 1969-2013: an epidemiological study . Lancet Planetary Health , 1(2), E65-E73 . Publisher's official version : https://doi.org/10.1016/S2542-5196(17)30009-8 , Open Access version : https://archimer.ifremer.fr/doc/00771/88283/
Reynaud Yann, Zheng Chao, Wu Guihui, Sun Qun, Rastogi Nalin (2017). Bayesian population structure analysis reveals presence of phylogeographically specific sublineages within previously ill-defined T group of Mycobacterium tuberculosis . Plos One , 12(2), e0171584 (13p.) . Publisher's official version : https://doi.org/10.1371/journal.pone.0171584 , Open Access version : https://archimer.ifremer.fr/doc/00771/88280/


Reynaud Yann, Rastogi Nalin (2016). New Mycobacterium tuberculosis LAM sublineage with geographical specificity for the Old World revealed by phylogenetical and Bayesian analyses . Tuberculosis , 101, 62-66 . https://doi.org/10.1016/j.tube.2016.07.014


Reynaud Yann, Millet Julie, Rastogi Nalin (2015). Genetic Structuration, Demography and Evolutionary History of Mycobacterium tuberculosis LAM9 Sublineage in the Americas as Two Distinct Subpopulations Revealed by Bayesian Analyses . Plos One , 10(10), e0140911 (15p.) . Publisher's official version : https://doi.org/10.1371/journal.pone.0140911 , Open Access version : https://archimer.ifremer.fr/doc/00771/88285/
Reynaud Yann, Millet Julie, Couvin David, Rastogi Nalin, Brown Christopher, Couppie Pierre, Legrand Eric (2015). Heterogeneity among Mycobacterium ulcerans from French Guiana Revealed by Multilocus Variable Number Tandem Repeat Analysis (MLVA) . Plos One , 10(2), e0118597 (9p.) . Publisher's official version : https://doi.org/10.1371/journal.pone.0118597 , Open Access version : https://archimer.ifremer.fr/doc/00771/88278/


Sambourg E., Dufour J, Edouard S., Morris A., Mosnier E., Reynaud Yann, Sainte-Marie D., Nacher M., Guegan J. -F., Couppie P. (2014). Réponses et réactions paradoxales au cours du traitement médicamenteux de l’infection à Mycobacterium ulcerans (ulcère de Buruli). Quatre observations en Guyane française . Annales De Dermatologie Et De Venereologie , 141(6-7), 413-418 . Publisher's official version : https://doi.org/10.1016/j.annder.2014.01.010 , Open Access version : https://archimer.ifremer.fr/doc/00771/88288/


Reynaud Yann, Pitchford Steven, de Decker Sophie, Wikfors Gary H., Brown Christopher L. (2013). Molecular Typing of Environmental and Clinical Strains of Vibrio vulnificus Isolated in the Northeastern USA . Plos One , 8(12), e83357 (11p.) . Publisher's official version : https://doi.org/10.1371/journal.pone.0083357 , Open Access version : https://archimer.ifremer.fr/doc/00771/88286/
de Decker Sophie, Reynaud Yann, Saulnier Denis, Reynaud Yann (2013). First molecular evidence of cross-species induction of metalloprotease gene expression in Vibrio strains pathogenic for Pacific oyster Crassostrea gigas involving a quorum sensing system . Aquaculture , 392, 1-7 . Publisher's official version : https://doi.org/10.1016/j.aquaculture.2013.01.033 , Open Access version : https://archimer.ifremer.fr/doc/00124/23539/


Beliaeff Benoit, Laugier Thierry, Chim Liet, Coatanea Denis, Della Patrona Luc, Goyard Emmanuel, Herlin Jose, Labreuche Yannick, Lemaire Pierrette, Lemonnier Hugues, Morvan Patrice, Patrois Jacques, Peignon Jean-Marie, Pham Dominique, Soulard Benoit, Wabete Nelly, Walling Emilie, Ansquer Dominique, Castex Mathieu, Lucas Ronan, Reynaud Yann (2012). Projet Déduction 2007-2010. Bilan par action et annexes . https://archimer.ifremer.fr/doc/00199/31006/


Alain Karine, Callac Nolwenn, Ciobanu Maria Cristina, Reynaud Yann, Duthoit Frederique, Jebbar Mohamed (2011). DNA extractions from deep subseafloor sediments: Novel cryogenic-mill-based procedure and comparison to existing protocols . Journal Of Microbiological Methods , 87(3), 355-362 . Publisher's official version : https://doi.org/10.1016/j.mimet.2011.09.015 , Open Access version : https://archimer.ifremer.fr/doc/00056/16691/


Reynaud Yann, Saulnier Denis, Mazel D, Goarant Cyrille, Le Roux F (2008). Correlation between detection of a plasmid and high-level virulence of Vibrio nigripulchritudo, a pathogen of the shrimp Litopenaeus stylirostris . Applied and environmental microbiology (depuis 1953) , 74(10), 3038-3047 . Publisher's official version : https://doi.org/10.1128/AEM.02680-07 , Open Access version : https://archimer.ifremer.fr/doc/00000/4523/
Reynaud Yann (2008). Identification de marqueurs génétiques de la virulence chez Vibrio nigripulchritudo, un pathogène de crevettes pénéides en Nouvelle-Calédonie . PhD Thesis , Université de Paris 6 – Pierre et Marie Curie . https://archimer.ifremer.fr/doc/00000/3906/
Goarant Cyrille, Lemonnier Hugues, Mugnier Chantal, de Decker Sophie, Courties Claude, Della Patrona Luc, Herbland Alain, Herlin Jose, Reynaud Yann, Ansquer Dominique (2008). Le syndrome d'été . In Santé de la crevette d'élevage en Nouvelle-Calédonie. 2008 Herbland, Alain, Harache, Yves (Coord.). Collection : Savoir faire. ISBN 978-2-7592-0080-1. pp. 33-77 (Editions Quae, 2008) .


Goarant Cyrille, Reynaud Yann, Ansquer Dominique, de Decker Sophie, Merien Fabrice (2007). Sequence polymorphism-based identification and quantification of Vibrio nigripulchritudo at the species and subspecies level targeting an emerging pathogen for cultured shrimp in New Caledonia . Journal of Microbiological Methods , 70(1), 30-38 . Publisher's official version : https://doi.org/10.1016/j.mimet.2007.03.007 , Open Access version : https://archimer.ifremer.fr/doc/00000/2729/
Goarant Cyrille, Reynaud Yann, de Decker Sophie, Ansquer Dominique, Herlin Jose, Wapotro B, Saulnier Denis, Le Roux Frederique (2007). Vibrio nigripulchritudo, un pathogène émergent pour la crevette d’élevage en Nouvelle-Calédonie. Fiches Biotechniques. Fiche Bio 2007-03 .
Saulnier Denis, Reynaud Yann, Arzul Isabelle, Miossec Laurence, Le Roux Frederique, Goarant Cyrille (2007). Emergence de maladies chez les organismes d'intérêt aquacole : quelques scénarios illustrés d'exemples . Productions Animales , 20(3), 207-211 . Open Access version : https://archimer.ifremer.fr/doc/00000/2980/


Goarant Cyrille, Reynaud Yann, Ansquer Dominique, de Decker Sophie, Saulnier Denis, Leroux Frederique (2006). Molecular epidemiology of Vibrio nigripulchritudo, a pathogen of cultured penaeid shrimp (Litopenaeus stylirostris) in New Caledonia . Systematic and Applied Microbiology , 29(7), 570-580 . Publisher's official version : https://doi.org/10.1016/j.syapm.2005.12.005 , Open Access version : https://archimer.ifremer.fr/doc/00000/1913/
IFREMER. Centre du Pacifique Département Aquaculture en Calédonie (2006). DEfi SANté Stylirostris 2002-2006 - Rapport final DESANS . https://archimer.ifremer.fr/doc/00304/41542/
Chim Liet, de Decker Sophie, Goyard Emmanuel, Peignon Jean-Marie, Reynaud Yann, Thomas Yoann (2006). Compte rendu de mission à la conférence mondiale sur l’aquaculture « Linking Tradition and Technology » organisée par la World Aquaculture Society (WAS) et la European Aquaculture Society (EAS) à Florence, Italie du 9 au 13 mai 2006 .