Mazurais David, Simon Victor, Auffret Pauline, Cormier Alexandre, Dauvé Alexandra, Madec Lauriane, Tanguy-Guillo Baptiste, Gayet Nicolas, Fleury Elodie, Le Luyer Jeremy (2024). Mutligenerational chronic exposure to near future ocean acidification in European sea bass (Dicentrarchus labrax): Insights into the regulation of the transcriptome in a sensory organ involved in feed intake, the tongue. Marine Environmental Research, 202, 106775 (10p.). https://doi.org/10.1016/j.marenvres.2024.106775

Lapègue Sylvie, Fortunato Honoré, Malkocs Tamas, Bouvier Corinne, Violette Herve, Cornette Florence, Arnaud-Haond Sophie, Bonin Aurélie, Spitz Jérôme, Viricel Pante Amelia, Noel Cyril, Lagarde Franck (2024). ADNe et diversité intraspécifique : opportunités et challenges au travers de deux exemples marins. Rencontres Bioinformatiques de l'Ifremer. 24 septembre 2024, La Tremblade.

Macé Sabrina, Rannou Cécile, Donnay-Moreno Claire, Gigout Frederique, Passerini Delphine, Kolypczuk Laetitia, Jerome Marc, Cardinal Mireille, Noel Cyril, Leroi Francoise (2024). Exploring cold-smoked salmon spoilage through the signature microbiome of three different processing plants. FOOD MICRO 2024 - 28th International ICFMH ( International Committee on Food Microbiology and Hygiene ) Conference. July 8-11 2024, Burgos, Spain.

Passerini Delphine, Kolypczuk Laetitia, Casanova Noemie, Macé Sabrina, Cormier Alexandre, Leroi Francoise (2024). Deciphering the bacterial interaction network within seafood microbiome to develop a sustainable biopreservation strategy. FOOD MICRO 2024 - 28th International ICFMH ( International Committee on Food Microbiology and Hygiene ) Conference. July 8-11 2024, Burgos, Spain.

Philippe Aurélie, Salaun Marie, Quemener Maxence, Noël Cyril, Tallec Kevin, Lacroix Camille, Coton Emmanuel, Burgaud Gaëtan (2024). Colonization and Biodegradation Potential of Fungal Communities on Immersed Polystyrene vs. Biodegradable Plastics: A Time Series Study in a Marina Environment. Journal Of Fungi, 10(6), 428 (24p.). Publisher's official version : https://doi.org/10.3390/jof10060428 , Open Access version : https://archimer.ifremer.fr/doc/00895/100686/

Guéganton Marion, Methou Pierre, Aubé Johanne, Noël Cyril, Rouxel Ouafae, Cueff-Gauchard Valerie, Gayet Nicolas, Durand Lucile, Pradillon Florence, Cambon Marie-Anne. Symbiont acquisition strategies in post-settlement stages of two co-occurring deep-sea Rimicaris shrimp. Advance IN PRESS. Publisher's official version : https://doi.org/10.22541/au.171309964.46362343/v1 , Open Access version : https://archimer.ifremer.fr/doc/00887/99898/

Royaux Coline, Mihoub Jean-Baptiste, Jossé Marie, Pelletier Dominique, Norvez Olivier, Reecht Yves, Fouilloux Anne, Rasche Helena, Hiltemann Saskia, Batut Bérénice, Eléaume Marc, Seguineau Pauline, Massé Guillaume, Amossé Alan, Bissery Claire, Lorrilliere Romain, Martin Alexis, Bas Yves, Virgoulay Thimothée, Chambon Valentin, Arnaud Elie, Michon Elisa, Urfer Clara, Trigodet Eloïse, Delannoy Marie, Loïs Gregoire, Julliard Romain, Grüning Björn, Le Bras Yvan, The 17 Galaxy-E Community . Guidance framework to apply best practices in ecological data analysis: Lessons learned from building Galaxy-Ecology. EcoEvoRxiv IN PRESS. Publisher's official version : https://doi.org/10.32942/X2G033 , Open Access version : https://archimer.ifremer.fr/doc/00887/99844/

Garcia Celine, Charles Maud, Chollet Bruno, Nadeau Aurelie, Serpin Delphine, Quintric Laure, Pepin Jean-Francois, Houssin Maryline, Lupo Coralie (2024). Understanding the role of Francisella halioticida in mussel mortalities in France: an integrative approach. Diseases Of Aquatic Organisms, 158, 81-99. https://doi.org/10.3354/dao03782

Reignier Oceane, Bormans Myriam, Hervé Fabienne, Robert Elise, Savar Veronique, Tanniou Simon, Amzil Zouher, Noël Cyril, Briand Enora (2024). Spatio-temporal connectivity of a toxic cyanobacterial community and its associated microbiome along a freshwater-marine continuum. Harmful Algae, 134, 102627 (18p.). Publisher's official version : https://doi.org/10.1016/j.hal.2024.102627 , Open Access version : https://archimer.ifremer.fr/doc/00889/100055/

Destanque Thibault, Le Luyer Jeremy, Quillien Virgile, Sham Koua Manaarii, Auffret Pauline, Ky Chin-Long (2024). Substantial gene expression shifts during larval transitions in the pearl oyster Pinctada margaritifera. Journal Of Experimental Zoology Part B-molecular And Developmental Evolution, 342(2), 76-84. Publisher's official version : https://doi.org/10.1002/jez.b.23243 , Open Access version : https://archimer.ifremer.fr/doc/00876/98828/

Denoeud France, Godfroy Olivier, Cruaud Corinne, Heesch Svenja, Nehr Zofia, Tadrent Nachida, Couloux Arnaud, Brillet-Guéguen Loraine, Delage Ludovic, McKeown Dean, Motomura Taizo, Sussfeld Duncan, Fan Xiao, Mazéas Lisa, Terrapon Nicolas, Barrera-Redondo Josué, Petroll Romy, Reynes Lauric, Choi Seok-Wan, Jo Jihoon, Uthanumallian Kavitha, Bogaert Kenny, Duc Céline, Ratchinski Pélagie, Lipinska Agnieszka, Noel Benjamin, Murphy Eleanor A., Lohr Martin, Khatei Ananya, Hamon-Giraud Pauline, Vieira Christophe, Akerfors Svea Sanja, Akita Shingo, Avia Komlan, Badis Yacine, Barbeyron Tristan, Belcour Arnaud, Berrabah Wahiba, Blanquart Samuel, Bouguerba-Collin Ahlem, Bringloe Trevor, Cattolico Rose Ann, Cormier Alexandre, Cruz De Carvalho Helena, Dallet Romain, de Clerck Olivier, Debit Ahmed, Denis Erwan, Destombe Christophe, Dinatale Erica, Dittami Simon, Drula Elodie, Faugeron Sylvain, Got Jeanne, Graf Louis, Groisillier Agnès, Guillemin Marie-Laure, Harms Lars, Hatchett William John, Henrissat Bernard, Hoarau Galice, Jollivet Chloé, Jueterbock Alexander, Kayal Ehsan, Kogame Kazuhiro, Le Bars Arthur, Leblanc Catherine, Ley Ronja, Liu Xi, Lopez Pascal Jean, Lopez Philippe, Manirakiza Eric, Massau Karine, Mauger Stéphane, Mest Laetitia, Michel Gurvan, Monteiro Catia, Nagasato Chikako, Nègre Delphine, Pelletier Eric, Phillips Naomi, Potin Philippe, Rensing Stefan A., Rousselot Ellyn, Rousvoal Sylvie, Schroeder Declan, Scornet Delphine, Siegel Anne, Tirichine Leila, Tonon Thierry, Valentin Klaus, Verbruggen Heroen, Weinberger Florian, Wheeler Glen, Kawai Hiroshi, Peters Akira F., Yoon Hwan Su, Hervé Cecile, Ye Naihao, Bapteste Eric, Valero Myriam, Markov Gabriel V., Corre Erwan, Coelho Susana M., Wincker Patrick, Aury Jean-Marc, Cock J. Mark. Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems. bioRxiv IN PRESS. Publisher's official version : https://doi.org/10.1101/2024.02.19.579948 , Open Access version : https://archimer.ifremer.fr/doc/00879/99116/

Migaou Mariem, Macé Sabrina, Maalej Hana, Marchand Laetitia, Bonnetot Sandrine, Noël Cyril, Sinquin Corinne, Jérôme Marc, Zykwinska Agata, Colliec-Jouault Sylvia, Maaroufi Raoui Mounir, Delbarre-Ladrat Christine (2024). Exploring the Exopolysaccharide Production Potential of Bacterial Strains Isolated from Tunisian Blue Crab Portunus segnis Microbiota. Molecules, 29(4), 774 (17p.). Publisher's official version : https://doi.org/10.3390/molecules29040774 , Open Access version : https://archimer.ifremer.fr/doc/00876/98817/

Sol Dourdin Thomas, Guyomard Killian, Rabiller Manuella, Houssais Nina, Cormier Alexandre, Le Monier Pauline, Sussarellu Rossana, Rivière Guillaume (2024). Ancestors’ Gift: Parental Early Exposure to the Environmentally Realistic Pesticide Mixture Drives Offspring Phenotype in a Larger Extent Than Direct Exposure in the Pacific Oyster, Crassostrea gigas. Environmental Science & Technology, 58(4), 1865-1876. Publisher's official version : https://doi.org/10.1021/acs.est.3c08201 , Open Access version : https://archimer.ifremer.fr/doc/00872/98346/

Carrier Gregory, Berthelier Jérémy, Maupetit Agathe, Nicolau Elodie, Marbouty Martial, Schreiber Nathalie, Charrier Aurelie, Carcopino Clemence, Leroi Laura, Saint-Jean Bruno (2024). Genetic and phenotypic intra-species diversity of alga Tisochrysis lutea reveals original genetic structure and domestication potential. European Journal Of Phycology, 59(1), 94-111. Publisher's official version : https://doi.org/10.1080/09670262.2023.2249073 , Open Access version : https://archimer.ifremer.fr/doc/00855/96704/

Auffret Pauline, de Massy Bernard, Clément Julie A. J. (2024). Mapping Meiotic DNA Breaks: Two Fully-Automated Pipelines to Analyze Single-Strand DNA Sequencing Data, hotSSDS and hotSSDS-extra. In Barchi, M., De Felici, M. (eds) 2024. Germ Cell Development. Methods and Protocols. Part of the book series: Methods in Molecular Biology (MIMB, volume 2770). DOI 10.1007/978-1-0716-3698-5_16, ISBN 978-1-0716-3697-8, pp.227-261 (Springer US).