Francis Mairet

Chercheur - Modélisation des microalgues

Laboratoire PHYSiologie des micro ALGues (PDG-ODE-PHYTOX-PHYSALG)

Contact par courriel

02 40 37 42 69

Fax : 02 40 37 40 73

Employeur : Ifremer

Site : Nantes

Adresse postale : Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03

URL : https://annuaire.ifremer.fr/cv/23648/

ORCID orcid icon : 0000-0002-3236-9772

Jeux de données

2019

Nef Charlotte, Henry Celine, Mairet Francis, Garnier Matthieu (2019). Proteome of T. lutea in B12 and N limitation . SEANOE . https://doi.org/10.17882/62006


Bibliographie

2022

Boucher Clemence, Andre Julie, Reveillon Damien, Lacour Thomas, Hansen Per Juel, Mairet Francis (2022). Quantifying the growth and phagotrophic activity of the mixotrophic microalga Prymnesium parvum under different phosphorus conditions . Challenger 150: The Challenger Society Conference 2022. 6-8 September 2022, London .
Nef Charlotte, Dittami Simon, Kaas Raymond, Briand Enora, Noël Cyril, Mairet Francis, Garnier Matthieu (2022). Sharing Vitamin B12 between Bacteria and Microalgae Does Not Systematically Occur: Case Study of the Haptophyte Tisochrysis lutea . Microorganisms , 10(7), 1337 (18p.) . Publisher's official version : https://doi.org/10.3390/microorganisms10071337 , Open Access version : https://archimer.ifremer.fr/doc/00781/89341/
Bayen Terence, Cazenave-Lacroutz Henri, Coville Jérôme, Mairet Francis (2022). Optimal control of microbial production in the chemostat . IFAC-PapersOnLine , 55(16), 208-213 . Publisher's official version : https://doi.org/10.1016/j.ifacol.2022.09.025 , Open Access version : https://archimer.ifremer.fr/doc/00794/90599/
Yabo Agustin G., Caillau Jean-Baptiste, Gouze Jean-Luc, de Jong Hidde, Mairet Francis (2022). Dynamical Analysis and Optimization of a Generalized Resource Allocation Model of Microbial Growth . Siam Journal On Applied Dynamical Systems , 21(1), 137-165 . Publisher's official version : https://doi.org/10.1137/21M141097X , Open Access version : https://archimer.ifremer.fr/doc/00756/86825/
Baroukh Caroline, Mairet Francis, Bernard Olivier (2022). The paradoxes hidden behind the Droop model highlighted by a metabolic approach . Frontiers in Plant Science , 13, 941230. (16p.) . Publisher's official version : https://doi.org/10.3389/fpls.2022.941230 , Open Access version : https://archimer.ifremer.fr/doc/00788/89995/

2021

Mairet Francis, Bayen Térence (2021). The promise of dawn: microalgae photoacclimation as an optimal control problem of resource allocation . Journal Of Theoretical Biology , 515, 110597 (12p.) . Publisher's official version : https://doi.org/10.1016/j.jtbi.2021.110597 , Open Access version : https://archimer.ifremer.fr/doc/00676/78768/
Mairet Francis, Gouzé Jean-Luc, de Jong Hidde (2021). Optimal proteome allocation and the temperature dependence of microbial growth laws . Npj Systems Biology And Applications , 7(1), 14 (11p.) . Publisher's official version : https://doi.org/10.1038/s41540-021-00172-y , Open Access version : https://archimer.ifremer.fr/doc/00686/79829/

2020

Nef Charlotte, Henry Céline, Nicolau Elodie, Bérard Jean-Baptiste, Hervé Fabienne, Caruana Amandine, Kaas Raymond, Mairet Francis, Garnier Matthieu (2020). Cobalamin Scarcity Modifies Carbon Allocation and Impairs DMSP Production Through Methionine Metabolism in the Haptophyte Microalgae Tisochrysis lutea . Frontiers In Marine Science , 7, 569660 (17p.) . Publisher's official version : https://doi.org/10.3389/fmars.2020.569560 , Open Access version : https://archimer.ifremer.fr/doc/00654/76575/
Martinez Carlos, Mairet Francis, Bernard Olivier (2020). Dynamics of the periodically forced light-limited Droop model . Journal Of Differential Equations , 269(4), 3890-3913 . Publisher's official version : https://doi.org/10.1016/j.jde.2020.03.020 , Open Access version : https://archimer.ifremer.fr/doc/00599/71140/
Mairet Francis, Bayen Térence (2020). Parameter Estimation for Dynamic Resource Allocation in Microorganisms: A Bi-level Optimization Problem . Ifac Papersonline , 53(2), 16814-16819 . Publisher's official version : https://doi.org/10.1016/j.ifacol.2020.12.1163 , Open Access version : https://archimer.ifremer.fr/doc/00690/80163/
Martinez Carlos, Ávila Andrés, Mairet Francis, Meier Leslie, Jeison David (2020). Modeling and Analysis of an Absorption Column Connected to a Microalgae Culture . Siam Journal On Applied Mathematics , 80(2), 772-791 . Publisher's official version : https://doi.org/10.1137/18M1225641 , Open Access version : https://archimer.ifremer.fr/doc/00617/72899/

2019

Nef Charlotte, Mairet Francis, Garnier Matthieu (2019). Comment les bactéries et les microalgues interagissent à travers le métabolisme de la vitamine B12 . Colloque & Assemblée Générale de la Société Phycologique de France. 14-15 Novembre 2019, Paris .
Mairet Francis (2019). CISPER: Computational Identification of Switch Points (in a Metabolic Network) within an Environmental Range . FOSBE 2019 - 8th IFAC Conference on Foundations of Systems Biology in Engineering. 15th – 18th October 2019, València, Spain .
Nef Charlotte, Mairet Francis, Kaas Raymond, Garnier Matthieu (2019). How haptophyte microalgae manage vitamin B12 limitation . EPC7 - 7th European Phycological Congress. 25-30 August 2019, Zagreb .
Nef Charlotte, Mairet Francis, Garnier Matthieu (2019). How bacteria and haptophytes interact through vitamin B12 metabolism . EPC7 - 7th European Phycological Congress. 25-30 august 2019, Zagreb .
Mairet Francis, Bernard Olivier (2019). Twelve quick tips for designing sound dynamical models for bioprocesses . Plos Computational Biology , 15(8), e1007222 (8p.) . Publisher's official version : https://doi.org/10.1371/journal.pcbi.1007222 , Open Access version : https://archimer.ifremer.fr/doc/00512/62336/
Nef Charlotte, Jung Sebastien, Mairet Francis, Kaas Raymond, Grizeau Dominique, Garnier Matthieu (2019). How haptophytes microalgae mitigate vitamin B-12 limitation . Scientific Reports , 9(8417), 11p. Publisher's official version : https://doi.org/10.1038/s41598-019-44797-W , Open Access version : https://archimer.ifremer.fr/doc/00504/61523/
Yegorov Ivan, Mairet Francis, de Jong Hidde, Gouze Jean-Luc (2019). Optimal control of bacterial growth for the maximization of metabolite production . Journal Of Mathematical Biology , 78(4), 985-1032 . Publisher's official version : https://doi.org/10.1007/s00285-018-1299-6 , Open Access version : https://archimer.ifremer.fr/doc/00486/59791/
Martinez Carlos, Mairet Francis, Plaza Luis, Sciandra Antoine, Bernard Olivier (2019). Quantifying the potential of microalgae to remove nutrients from wastewater . Ifac Papersonline , 52(26), 287-292 . Publisher's official version : https://doi.org/10.1016/j.ifacol.2019.12.272 , Open Access version : https://archimer.ifremer.fr/doc/00600/71188/
Mairet Francis, Baron Regis (2019). A Physiologically Structured Equation to Consider Quota Heterogeneity in the Droop Model . Ifac Papersonline , 52(26), 275-280 . Publisher's official version : https://doi.org/10.1016/j.ifacol.2019.12.270 , Open Access version : https://archimer.ifremer.fr/doc/00600/71187/
Martínez Carlos, Mairet Francis, Martinon Pierre, Bernard Olivier (2019). Dynamics and control of a periodically forced microalgae culture . Ifac Papersonline , 52(1), 922-927 . Publisher's official version : https://doi.org/10.1016/j.ifacol.2019.06.180 , Open Access version : https://archimer.ifremer.fr/doc/00505/61623/
Cinquemani E., Mairet Francis, Yegorov I., de Jong H., Gouze J. -L. (2019). Optimal control of bacterial growth for metabolite production: The role of timing and costs of control . 2019 18th European Control Conference (ECC), Naples, Italy, 2019, pp. 2657-2662.

2018

Martinez Carlos, Mairet Francis, Bernard Olivier (2018). Theory of turbid microalgae cultures. Journal Of Theoretical Biology , 456, 190-200 . Publisher's official version : https://doi.org/10.1016/j.jtbi.2018.07.016 , Open Access version : https://archimer.ifremer.fr/doc/00450/56133/
Mairet Francis, Baroukh Caroline, Berard Jean-Baptiste, Carrier Gregory, Charrier Aurelie, Garnier Matthieu, Kaas Raymond, Lukomska Ewa, Nicolau Elodie, Rouxel Catherine, Schreiber Nathalie, Saint-Jean Bruno, Bernard Olivier, Bougaran Gael (2018). Metabolic modelling of microalgae during nitrogen starvation . ICHA2018 - 18th International Conference on Harmful Algae "From ecosystems to socio-ecosystems". 21-26 october 2018, Nantes, France .
Nef Charlotte, Le Chevanton Myriam, Kaas Raymond, Grizeau Dominique, Mairet Francis, Garnier Matthieu, Bougaran Gael (2018). Bacteria-Microalgae interactions through nitrogen and cobalamin (B12): From Competition to mutualism . ALFF - ALgal Microbiome: Friends and Foes 2018 workshop. 16 august 2018, Szczecin .
Demory David, Combe Charlotte, Hartmann Philipp, Talec Amelle, Pruvost Eric, Hamouda Raouf, Souille Fabien, Lamarea Pierre-Olivier, Bristeau Marie-Odile, Sainte-Marie Jacques, Rabouille Sophie, Mairet Francis, Sciandra Antoine, Bernard Olivier (2018). How do microalgae perceive light in a high-rate pond? Towards more realistic Lagrangian experiments . Royal Society Open Science , 5(5), 180523 (14p.) . Publisher's official version : https://doi.org/10.1098/rsos.180523 , Open Access version : https://archimer.ifremer.fr/doc/00445/55692/
Nef Charlotte, Jung Sebastien, Garnier Matthieu, Nicolau Elodie, Berard Jean-Baptiste, Lukomska Ewa, Mairet Francis, Kaas Raymond, Grizeau Dominique, Bougaran Gael (2018). Characterisation of Tisochrysis lutea metabolic response under B12 limitation (KN) . YAS 2018 - fourth edition of the Young Algaeneers Symposium. May 14-18 2018, Oban, Scotland .
Yegorov Ivan, Mairet Francis, Gouze Jean-Luc (2018). Optimal feedback strategies for bacterial growth with degradation, recycling, and effect of temperature . Optimal Control Applications & Methods , 39(2), 1084-1109 . Publisher's official version : https://doi.org/10.1002/oca.2398 , Open Access version : https://archimer.ifremer.fr/doc/00434/54592/
Mairet Francis (2018). A biomolecular proportional integral controller based on feedback regulations of protein level and activity . Royal Society Open Science , 5(2), 171966 (11p.) . Publisher's official version : https://doi.org/10.1098/rsos.171966 , Open Access version : https://archimer.ifremer.fr/doc/00434/54598/
Martinez Carlos, Bernard Olivier, Mairet Francis (2018). Maximizing microalgae productivity in a light-limited chemostat . Ifac Papersonline , 51(2), 735-740 . Publisher's official version : https://doi.org/10.1016/j.ifacol.2018.04.001 , Open Access version : https://archimer.ifremer.fr/doc/00439/55091/

2017

Mairet Francis (2017). Optimal resource allocation for bacterial growth . PGMODays 2017. November 13-14, 2017, Paris .
Mairet Francis, Bernard Olivier (2017). Robustness of bioprocess feedback control to biodiversity . Aiche Journal , 63(7), 2742-2750 . https://doi.org/10.1002/aic.15604
Bayen T., Mairet Francis (2017). Optimisation of strain selection in evolutionary continuous culture . International Journal Of Control , 90(12), 2748-2759 . https://doi.org/10.1080/00207179.2016.1264631

2016

Mairet Francis, Gouze Jean-Luc (2016). Hybrid Control of a Bioreactor With Quantized Measurements . Ieee Transactions On Automatic Control , 61(5), 1385-1390 . https://doi.org/10.1109/TAC.2015.2471735
Giordano Nils, Mairet Francis, Gouze Jean-Luc, Geiselmann Johannes, de Jong Hidde (2016). Dynamical Allocation of Cellular Resources as an Optimal Control Problem: Novel Insights into Microbial Growth Strategies . Plos Computational Biology , 12(3), e1004802 (1-28) . https://doi.org/10.1371/journal.pcbi.1004802
Bernard Olivier, Mairet Francis, Chachuat Benoit (2016). Modelling of Microalgae Culture Systems with Applications to Control and Optimization . In Microalgae Biotechnology. Volume 153 of the series Advances in Biochemical Engineering/Biotechnology. 2016. ISBN 978-3-319-23807-4. pp 59-87 .
Mairet Francis, Bernard Olivier (2016). The Photoinhibistat: Operating Microalgae Culture under Photoinhibition for Strain Selection . Ifac Papersonline , 49(7), 1068-1073 . https://doi.org/10.1016/j.ifacol.2016.07.344

2015

Jimenez Julie, Latrille Eric, Harmand Jerome, Robles Angel, Ferrer Jose, Gaida Daniel, Wolf Christian, Mairet Francis, Bernard Olivier, Alcaraz-Gonzalez Victor, Mendez-Acosta Hugo, Zitomer Daniel, Totzke Dennis, Spanjers Henri, Jacobi Fabian, Guwy Alan, Dinsdale Richard, Premier Giuliano, Mazhegrane Sofiane, Ruiz-Filippi Gonzalo, Seco Aurora, Ribeiro Thierry, Pauss Andre, Steyer Jean-Philippe (2015). Instrumentation and control of anaerobic digestion processes: a review and some research challenges . Reviews In Environmental Science And Bio-technology , 14(4), 615-648 . https://doi.org/10.1007/s11157-015-9382-6
Bayen T., Mairet Francis, Martinon P., Sebbah M. (2015). Analysis of a periodic optimal control problem connected to microalgae anaerobic digestion . Optimal Control Applications & Methods , 36(6), 750-773 . https://doi.org/10.1002/oca.2127
Mairet Francis, Munoz-Tamayo Rafael, Bernard Olivier (2015). Adaptive control of light attenuation for optimizing microalgae production . Journal Of Process Control , 30, 117-124 . https://doi.org/10.1016/j.jprocont.2015.03.010
Bayen T., Mairet Francis, Mazade M. (2015). Optimal feeding strategy for the minimal time problem of a fed-batch bioreactor with mortality rate . Optimal Control Applications & Methods , 36(1), 77-92 . https://doi.org/10.1002/oca.2102
Bayen Terence, Mazade Marc, Mairet Francis (2015). Analysis of an optimal control problem connected to bioprocesses involving a saturated singular arc . Discrete And Continuous Dynamical Systems-series B , 20(1), 39-58 . https://doi.org/10.3934/dcdsb.2015.20.39

2014

Munoz-Tamayo Rafael, Martinon Pierre, Bougaran Gael, Mairet Francis, Bernard Olivier (2014). Getting the most out of it: Optimal experiments for parameter estimation of microalgae growth models . Journal Of Process Control , 24(6), 991-1001 . Publisher's official version : https://doi.org/10.1016/j.jprocont.2014.04.021 , Open Access version : https://archimer.ifremer.fr/doc/00191/30252/
Mairet Francis, Moisan Marcelo, Bernard Olivier (2014). Interval observer with near optimal adaptation dynamics. Application to the estimation of lipid quota in microalgae . International Journal Of Robust And Nonlinear Control , 24(6), 1142-1157 . https://doi.org/10.1002/rnc.2934
Bayen Terence, Mairet Francis (2014). Optimization of the separation of two species in a chemostat . Automatica , 50(4), 1243-1248 . https://doi.org/10.1016/j.automatica.2014.02.024
Mairet Francis, Moisan Marcelo, Bernard Olivier (2014). Estimation of neutral lipid and carbohydrate quotas in microalgae using adaptive interval observers . Bioprocess And Biosystems Engineering , 37(1), 51-61 . https://doi.org/10.1007/s00449-013-0913-7
Grimaud Ghjuvan Micaelu, Mairet Francis, Bernard Olivier (2014). Modelling thermal adaptation in microalgae : an adaptive dynamics point of view . Ifac Papersonline , 47(3), 4376-4381 . https://doi.org/10.3182/20140824-6-ZA-1003.00982
Mairet Francis, Gouze Jean-Luc (2014). Control of a Bioreactor with Quantized Measurements . Fages F., Piazza C. (eds) Formal Methods in Macro-Biology. FMMB 2014. Lecture Notes in Computer Science, vol 8738. Springer, Cham. pp 47-62 .
Mairet Francis, Bernard Oliver (2014). Robustness of Closed-Loop Control to Biodiversity: a Didactic Example . Ifac Papersonline , 47(3), 5321-5326 . https://doi.org/10.3182/20140824-6-ZA-1003.02193
Bayen Terence, Mairet Francis, Mazade Marc (2014). Minimal time problem for a fed-batch bioreactor with a non admissible singular arc . European Control Conference (ECC), Jun 2014, Strasbourg, France. pp.165-170, 2014 .

2013

Bayen Terence, Mairet Francis (2013). Minimal time control of fed-batch bioreactor with product inhibition . Bioprocess And Biosystems Engineering , 36(10), 1485-1496 . https://doi.org/10.1007/s00449-013-0911-9
Bayen Terence, Gajardo Pedro, Mairet Francis (2013). Optimal Synthesis for the Minimum Time Control Problems of Fed-Batch Bioprocesses for Growth Functions with Two Maxima . Journal Of Optimization Theory And Applications , 158(2), 521-553 . https://doi.org/10.1007/s10957-012-0225-0
Munoz-Tamayo Rafael, Mairet Francis, Bernard Olivier (2013). Optimizing microalgal production in raceway systems . Biotechnology Progress , 29(2), 543-552 . https://doi.org/10.1002/btpr.1699
Bayen Terence, Mairet Francis, Martinon Pierre, Sebbah Matthieu (2013). Optimizing the anaerobic digestion of microalgae in a coupled process . Control Conference (ECC), 2013 European. pp.1-7 .
Munoz-Tamayo Rafael, Mairet Francis, Bernard Olivier (2013). Driving microalgal production in raceway systems to near optimal productivities . Control Conference (ECC), 2013 European. ISBN 978-3-952-41734-8. pp.4184-4189 .

2012

Donoso-Bravo Andres, Mairet Francis (2012). Determining the limiting reaction in anaerobic digestion processes. How has this been tackled? Journal Of Chemical Technology And Biotechnology , 87(10), 1375-1378 . https://doi.org/10.1002/jctb.3890
Mairet Francis, Bernard Olivier, Cameron Elliot, Ras Monique, Lardon Laurent, Steyer Jean-Philippe, Chachuat Benoit (2012). Three-reaction model for the anaerobic digestion of microalgae . Biotechnology And Bioengineering , 109(2), 415-425 . https://doi.org/10.1002/bit.23350

2011

Mairet Francis, Bernard Olivier, Ras Monique, Lardon Laurent, Steyer Jean-Philippe (2011). Modeling anaerobic digestion of microalgae using ADM1 . Bioresource Technology , 102(13), 6823-6829 . https://doi.org/10.1016/j.biortech.2011.04.015
Mairet Francis, Bernard Olivier, Masci Pierre, Lacour Thomas, Sciandra Antoine (2011). Modelling neutral lipid production by the microalga Isochrysis aff. galbana under nitrogen limitation . Bioresource Technology , 102(1), 142-149 . https://doi.org/10.1016/j.biortech.2010.06.138

2010

Mairet Francis, Villon Pierre, Boitel-Conti Michele, Shakourzadeh Khalil (2010). Modeling and Optimization of Hairy Root Growth in Fed-Batch Process . Biotechnology Progress , 26(3), 847-856 . https://doi.org/10.1002/btpr.388
Mairet Francis, Moisan Marcelo, Bernard Olivier (2010). Interval observer-based estimator of specific growth rate in bioreactors . Journal Européen des Systèmes Automatisés , 44(4-5), 493-507 .

2009

Mairet Francis, Sierra Julia, Glorian Virginie, Villon Pierre, Shakourzadeh Khalil, Boitel-Conti Michele (2009). A new approach to define optimized range of medium composition for enhancement of hairy root production in fed-batch process . Bioprocess And Biosystems Engineering , 32(2), 257-265 . https://doi.org/10.1007/s00449-008-0246-0
Mairet Francis, Bernard Olivier (2009). Coupling framers to get enhanced interval observers. Application to growth rate estimation in a photobioreactor . Decision and Control, 2009 held jointly with the 2009 28th Chinese Control Conference. CDC/CCC 2009. Proceedings of the 48th IEEE Conference on. Book Series: IEEE Conference on Decision and Control. pp.7581-7586 .


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