Gregory Carrier

Gregory Carrier

Chercheur en génétique des algues

Laboratoire Physiologie et Biotechnologie des Algues (PDG-RBE-BRM-LPBA)

Contact par courriel

02 40 37 42 61

Employeur : Ifremer

Site : Nantes

Adresse postale : Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03

URL : https://annuaire.ifremer.fr/cv/18353/

ORCID orcid icon : 0000-0001-6859-5707

Fonctions actuelles

Activités portant sur la génétique des algues, avec une composante bio-informatique permettant l’intégration des données « omiques » : du gène au phénotype. Expertise : programme de sélection , éléments mobiles, diversité. 


Jeux de données

2019

Sussarellu Rossana, Carrier Gregory (2019). Génome de Tetraselmis suecica. https://sextant.ifremer.fr/record/c60518a3-ad2a-4f8b-8437-52f44608f6e4/

2018

Berthelier Jérémy, Casse Nathalie, Daccord Nicolas, Jamilloux Véronique, Saint-Jean Bruno, Carrier Gregory (2018). Annotation of the genome assembly (version 2) of the microalga Tisochrysis lutea . SEANOE . https://doi.org/10.17882/52231

2017

Carrier Gregory, Berthelier Jeremy, Schreiber Nathalie (2017). Séquençage du génome de 14 souches de l’algue Tisochrysis lutea. https://sextant.ifremer.fr/record/446b5602-a4e8-4c2f-a7c4-2f6e77ed4317/
Carrier Gregory, Baroukh Caroline, Rouxel Catherine, Duboscq-Bidot Laetitia, Schreiber Nathalie, Bougaran Gael (2017). Draft genomes of the algae Tisochrysis lutea strains . SEANOE . https://doi.org/10.17882/47171


Bibliographie

2019

Huang Bing, Marchand Justine, Thiriet-Rupert Stanislas, Carrier Gregory, Saint-Jean Bruno, Lukomska Ewa, Moreau Bertrand, Morant-Manceau Annick, Bougaran Gael, Mimouni Virginie (2019). Betaine lipid and neutral lipid production under nitrogen or phosphorus limitation in the marine microalga Tisochrysis lutea (Haptophyta) . Algal Research-biomass Biofuels And Bioproducts , 40, 101506 (15p.) . https://doi.org/10.1016/j.algal.2019.101506

2018

Mairet Francis, Baroukh Caroline, Berard Jean-Baptiste, Carrier Gregory, Charrier Aurelie, Garnier Matthieu, Kaas Raymond, Lukomska Ewa, Nicolau Elodie, Rouxel Catherine, Schreiber Nathalie, Saint-Jean Bruno, Bernard Olivier, Bougaran Gael (2018). Metabolic modelling of microalgae during nitrogen starvation . ICHA2018 - 18th International Conference on Harmful Algae "From ecosystems to socio-ecosystems". 21-26 october 2018, Nantes, France .
Berthelier Jeremy, Frances Tristan, Badawi Myriam, Jamailloux Veronique, Casse Nathalie, Saint-Jean Bruno, Carrier Gregory (2018). PiRATE v2: detection, classification and annotation of transposable elements of non-model organisms . Plant Epi/Genetics 2018 "plant epigenetics and transposable elements - from basic research to plant breeding". 29-31 October 2018, Angers .
Berthelier Jeremy, Frances Tristan, Badawi Myriam, Jamilloux Véronique, Casse Nathalie, Saint-Jean Bruno, Carrier Gregory (2018). PirateV2, detection, classification and annotation of TEs of non-model organisms . JOBIM 2018 - Journées Ouvertes Biologie, Informatique et Mathématiques. 3-6 juillet 2018, Marseille .
Berthelier Jeremy, Casse Nathalie, Daccord Nicolas, Jamilloux Veronique, Saint-Jean Bruno, Carrier Gregory (2018). A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea . Bmc Genomics , 19(1), 378 (14p.) . Publisher's official version : https://doi.org/10.1186/s12864-018-4763-1 , Open Access version : https://archimer.ifremer.fr/doc/00441/55250/
Aite Meaziane, Chevallier Marie, Frioux Cleamence, Trottier Camille, Got Jeanne, Paz Cortes Maria, Mendoza Sebastian N., Carrier Gregory, Dameron Olivier, Guillaudeux Nicolas, Latorre Mauricio, Loira Nicolas, Markov Gabriel V., Maass Alejandro, Siegel Anne (2018). Traceability, reproducibility and wiki-exploration for "a-la-carte" reconstructions of genome-scale metabolic models . Plos Computational Biology , 14(5), e1006146 (25p.) . Publisher's official version : https://doi.org/10.1371/journal.pcbi.1006146 , Open Access version : https://archimer.ifremer.fr/doc/00448/55985/
Thiriet-Rupert Stanislas, Carrier Gregory, Trottier Camille, Eveillard D., Schoefs B., Bougaran Gael, Cadoret Jean-Paul, Chenais B., Saint-Jean Bruno (2018). Identification of transcription factors involved in the phenotype of a domesticated oleaginous microalgae strain of Tisochrysis lutea . Algal Research-biomass Biofuels And Bioproducts , 30, 59-72 . Publisher's official version : https://doi.org/10.1016/j.algal.2017.12.011 , Open Access version : https://archimer.ifremer.fr/doc/00418/52973/
Berthelier Jeremy, Casse Nathalie, Daccord Nicolas, Jamailloux Veronique, Saint-Jean Bruno, Carrier Gregory (2018). PiRATE: a Pipeline to Retrieve and Annotate TEs of non-model organisms . PAG XXVI (The Plant and Animal Genome Conference) - The Largest Ag-Genomics Meeting in the World. January 13-17, 2018, San Diego, USA .
Berthelier Jeremy, Casse Nathalie, Daccord Nicolas, Saint-Jean Bruno, Carrier Gregory (2018). PiRATE: a Pipeline to Retrieve and Annotate Transposable Elements in non-model organisms . PAG XXVI (The Plant and Animal Genome Conference) - The Largest Ag-Genomics Meeting in the World. January 13-17, 2018, San Diego, USA.
Carrier Gregory, Baroukh Caroline, Rouxel Catherine, Duboscq-Bidot Laetitia, Schreiber Nathalie, Bougaran Gael (2018). Draft genomes and phenotypic characterization of Tisochrysis lutea strains. Toward the production of domesticated strains with high added value . Algal Research-biomass Biofuels And Bioproducts , 29, 1-11 . Publisher's official version : https://doi.org/10.1016/j.algal.2017.10.017 , Open Access version : https://archimer.ifremer.fr/doc/00411/52204/

2017

Berthelier Jeremy, Casse Nathalie, Daccord Nicolas, Jamilloux Veronique, Saint-Jean Bruno, Carrier Gregory (2017). PiRATE: a Pipeline to Retrieve and Annotate TEs in microalgal genomes . EMBO-EMBL 2017 "From Single- to Multiomics: Applications and Challenges in Data Integration". 12 - 14 Nov 2017, Heidelberg, Germany .
Garnier Matthieu, Rogniaux H, Carrier Gregory, Berard Jean-Baptiste, Le Grand Fabienne, Cadoret Jean-Paul, Bougaran Gael, Saint-Jean Bruno (2017). Use of mutant strain, ecophysiological studies, and deep proteomic analysis reveal mechanisms of nitrogen acclimation and carbon partitioning in the haptophyte Tisochrysis lutea . IPC 11 - 11th International Phycologycal Congress “Challenges of the molecular era for algal research and the promise of bioprospecting”. August 13 to 19 2017, Szczecin, Poland .
Garnier Matthieu, Rogniaux H, Carrier Gregory, Berard Jean-Baptiste, Le Grand Fabienne, Lukomska Ewa, Rouxel Catherine, Schreiber Nathalie, Cadoret Jean-Paul, Bougaran Gael, Saint-Jean Bruno (2017). High sensibility to nitrogen and specific regulation of proteins involved carbon partitioning drive lipid over accumulation in Tisochrysis lutea 2X strain . ISAP 2017 - 6th Congress of the International Society for Applied Phycology. 18th to 23rd June 2017, Nantes .
Berthelier Jeremy, Casse Nathalie, Rouxel Catherine, Daccord Nicolas, Lhuissier M, Saint-Jean Bruno, Carrier Gregory (2017). TEs as markers of the genetic stability of domesticated microalgae after cryopreservation process . ISAP 2017 - 6th Congress of the International Society for Applied Phycolgy. 18th to 23rd June 2017, Nantes .
Ifremer (2017). Processus côtiers et littoraux . Rapport du groupe 1b - Réflexion stratégique 2017-2018 .
Berthelier Jeremy, Carrier Gregory (2017). PiRATE: a Pipeline to Retrieve and Annotate Transposable Elements . PiRATE tutorial . https://archimer.ifremer.fr/doc/00412/52373/

2016

Garnier Matthieu, Bougaran Gael, Pavlovic Marija, Berard Jean-Baptiste, Carrier Gregory, Charrier Aurelie, Le Grand Fabienne, Lukomska Ewa, Rouxel Catherine, Schreiber Nathalie, Cadoret Jean-Paul, Rogniaux Helene, Saint-Jean Bruno (2016). Use of a lipid rich strain reveals mechanisms of nitrogen limitation and carbon partitioning in the haptophyte Tisochrysis lutea . Algal Research-biomass Biofuels And Bioproducts , 20, 229-248 . Publisher's official version : https://doi.org/10.1016/j.algal.2016.10.017 , Open Access version : https://archimer.ifremer.fr/doc/00356/46702/
Thiriet-Rupert Stanislas, Carrier Gregory, Chenais Benoit, Trottier Camille, Bougaran Gael, Cadoret Jean-Paul, Schoefs Benoit, Saint-Jean Bruno (2016). Transcription factors in microalgae: genome-wide prediction and comparative analysis . Bmc Genomics , 17(282), 1-16 . Publisher's official version : https://doi.org/10.1186/s12864-016-2610-9 , Open Access version : https://archimer.ifremer.fr/doc/00333/44403/
Thiriet-Rupert Stanislas, Carrier Gregory, Chenais Benoît, Trottier Camille, Eveillard Damien, Bougaran Gael, Cadoret Jean-Paul, Schoefs Benoît, Saint-Jean Bruno (2016). Reconstruction of gene network and regulatory network of an improved microalgae strain . aDVANCES IN SYSTEMS AND SYNTHETIC BIOLOGY :Modelling Complex Biological Systems in the Context of Genomics, Thematic Research School. March 21st to 25th 2016, Évry .
Berthelier Jeremy, Casse Nathalie, Saint-Jean Bruno, Carrier Gregory (2016). Annotation of TEs in the draft genome of the marine microalga Tisochrysis lutea . ICTE 2016 - International Congress on Transportable Elements. 16-19 april 2016, Saint-Malo, France .

2015

Thiriet-Rupert Stanislas, Carrier Gregory, Chenais Benoît, Trottier Camille, Eveillard Damien, Bougaran Gael, Cadoret Jean-Paul, Schoefs Benoît, Saint-Jean Bruno (2015). Comprendre la production de lipides chez la microalgue Tisochrysis lutea . 13ème Forum Jeune-Recherche 2015, Université du Maine, Le Mans .
Garnier Matthieu, Bougaran Gael, Pavlovic M, Berard Jean-Baptiste, Carrier Gregory, Charrier Aurelie, Le Grand Fabienne, Lukomska Ewa, Rouxel Catherine, Schreiber Nathalie, Cadoret Jean-Paul, Rogniaux Helene, Saint-Jean Bruno (2015). Tisochrysis. lutea 2Xc1 strain is so fat. Why? EPC6 - 6th European Phycological Congress. 23-28 August 2015, London .
Charrier Aurelie Georgette, Berard Jean-Baptiste, Bougaran Gael, Carrier Gregory, Lukomska Ewa, Schreiber Nathalie, Fournier Flora, Charrier Aurelie, Rouxel Catherine, Garnier Matthieu, Cadoret Jean-Paul, Saint-Jean Bruno (2015). High-affinity nitrate/nitrite transporter genes (Nrt2) in Tisochrysis lutea: identification and expression analyses reveal some interesting specificities of Haptophyta microalgae . Physiologia Plantarum , 154(4), 572-590 . Publisher's official version : https://doi.org/10.1111/ppl.12330 , Open Access version : https://archimer.ifremer.fr/doc/00253/36467/

2014

Carrier Gregory, Berard Jean-Baptiste, Rouxel Catherine, Garnier Matthieu, Saint-Jean Bruno, Bougaran Gael (2014). Dynamique du génome et du phénotype de Tysochrysis lutea en réponses à des stress abiotiques utilisés en sélection variétale . Colloque annuel de la Société Phycologique de France. 24 Novembre 2014, Paris, France .
Carrier Gregory, Garnier Matthieu, Le Cunff Loic, Bougaran Gael, Probert Ian, De Vargas Colomban, Corre Erwan, Rouxel Catherine, Charrier Aurelie, Saint-Jean Bruno, Cadoret Jean-Paul (2014). Comparative transcriptome of wild type and selected strains of the microalgae Tisochrysis lutea provides insights into the genetic basis, lipid metabolism and the life cycle . Alg'n'Chem 2014 - Algae, new resources for Industry ? March 31 - April 3, 2014 Montpellier - France.
Garnier Matthieu, Carrier Gregory, Rogniaux Helene, Nicolau Elodie, Bougaran Gael, Saint-Jean Bruno, Cadoret Jean-Paul (2014). Comparative proteomics reveals proteins impacted by nitrogen deprivation in wild-type and high lipid-accumulating mutant strains of Tisochrysis lutea . Journal Of Proteomics , 105, 107-120 . Publisher's official version : https://doi.org/10.1016/j.jprot.2014.02.022 , Open Access version : https://archimer.ifremer.fr/doc/00179/29012/
Thiriet-Rupert Stanislas, Charrier Aurelie Georgette, Carrier Gregory, Schreiber Nathalie, Lukomska Ewa, Bougaran Gael, Saint-Jean Bruno, Chenais Benoît, Schoefs Benoît, Cadoret Jean-Paul (2014). Study of transcription factors involved in lipid accumulation-induced by nitrogen starvation in the microalgae Tisochrysis lutea . Alg'n'Chem 2014 - Algae, new resources for Industry ? March 31 - April 3, 2014 Montpellier - France .
Carrier Gregory, Garnier Matthieu, Le Cunff L, Bougaran Gael, Probert Ian, De Vargas Colomban, Corre Erwan, Rouxel Catherine, Charrier Aurelie, Saint-Jean Bruno, Cadoret Jean-Paul (2014). Comparative Transcriptome of Wild Type and Selected Strains of Tisochrysis lutea Provides Insights into the Genetic Basis, Lipid Metabolism and the Life Cycle . YAS2014 : Young Algaeneers symposium 2014. 3-5 Apr 2014 Montpellier-Narbonne (France) .
Carrier Gregory, Garnier Matthieu, Le Cunff Loic, Bougaran Gael, Probert Ian, De Vargas Colomban, Corre E, Cadoret Jean-Paul, Saint-Jean Bruno (2014). Comparative Transcriptome of Wild Type and Selected Strains of the Microalgae Tisochrysis lutea Provides Insights into the Genetic Basis, Lipid Metabolism and the Life Cycle . Plos One , 9(1), - . Publisher's official version : https://doi.org/10.1371/journal.pone.0086889 , Open Access version : https://archimer.ifremer.fr/doc/00175/28662/
Cadoret Jean-Paul, Bougaran Gael, Berard Jean-Baptiste, Carrier Gregory, Charrier Aurelie, Coulombier Noemie, Garnier Matthieu, Kaas Raymond, Le Dean Loic, Lukomska Ewa, Nicolau Elodie, Rouxel Catherine, Saint-Jean Bruno, Schreiber Nathalie (2014). Microalgues et Biotechnologie . In Valorisation et économie des ressources marines. Volume 4. Série Mer et Océan dirigée par André Mariotti sous la direction d'André Monaco et Patrick Prouzet. 2014. ISBN : 978-1-78405-003-0 . Chapitre 2, pp.65-112 .
Gastineau Romain, Davidovich Nikolai, Hansen Gert, Rines Jan, Wulff Angela, Kaczmarska Irena, Ehrman James, Hermann Dorothee, Maumus Florian, Hardivillier Yann, Leignel Vincent, Jacquette Boris, Meleder Vona, Hallegraeff Gustaaf, Yallop Marian, Perkins Rupert, Cadoret Jean-Paul, Saint-Jean Bruno, Carrier Gregory, Mouget Jean-Luc (2014). Haslea ostrearia-like Diatoms: Biodiversity out of the Blue . Advances in Botanical Research : Sea Plants , 71, 441-465 . https://doi.org/10.1016/B978-0-12-408062-1.00015-9

2013

Garnier Matthieu, Carrier Gregory, Rogniaux Helene, Nicolau Elodie, Bougaran Gael, Saint-Jean Bruno, Cadoret Jean-Paul (2013). Use comparative proteomics on a selected microalgae provides candidates for biofuel production. EuPA 2013, 14-17 Octobre 2013, Saint-Malo, France . https://archimer.ifremer.fr/doc/00176/28735/


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