Nef Charlotte, Henry Celine, Mairet Francis, Garnier Matthieu (2019). Proteome of T. lutea in B12 and N limitation . SEANOE . https://doi.org/10.17882/62006

Innerarity J., Djema W., Mairet Francis, Gouzé J.-L. (2024). Optimal resource allocation in micro-organisms under periodic nutrient fluctuations . Journal of Theoretical Biology , 595, 111953 (8p.) . Publisher's official version : https://doi.org/10.1016/j.jtbi.2024.111953 , Open Access version : https://archimer.ifremer.fr/doc/00913/102513/

Bayen Térence, Mairet Francis (2024). Approximation of Chattering Arcs in Optimal Control Problems Governed by Mono-Input Affine Control Systems . Set-valued And Variational Analysis , 32(3), 21 (21p.) . https://doi.org/10.1007/s11228-024-00725-3

Mairet Francis (2023). Stratégies de contrôle pour maximiser la productivité des systèmes de culture de microalgues . ALGORESEAU. Jumeaux numériques et algues : Outils de pilotage pour l’optimisation des procédés. 6/12/2023, webinaire .

Bayen Térence, Coville Jérôme, Mairet Francis (2023). Stabilization of the chemostat system with mutations and application to microbial production . Optimal Control Applications & Methods , 44(6), 3342-3360 . Publisher's official version : https://doi.org/10.1002/oca.3041 , Open Access version : https://archimer.ifremer.fr/doc/00848/96010/

Boucher Clemence, Andre Julie, Sibat Manoella, Reveillon Damien, Lacour Thomas, Hansen Per Juel, Mairet Francis (2023). Prymnesium parvum, a bloom-forming haptophyte that use toxins to mediate food uptake, especially under P-limitation . EPC 2023 - 8th European Phycological Congress /8ème Congrès Phycologique Européen “Opportunités scientifiques pour une révolution globale dans le domaine des Algues”. 20-26 August 2023, Brest, France .

Boucher Clemence, Lacour Thomas, André Julie, Reveillon Damien, Hansen Per Juel, Mairet Francis (2023). Mixotrophic lifestyle of the ichthyotoxic haptophyte, Prymnesium parvum, offered different sources of phosphorus . Harmful Algae , 127, 102483 (10p.) . Publisher's official version : https://doi.org/10.1016/j.hal.2023.102483 , Open Access version : https://archimer.ifremer.fr/doc/00849/96073/

Boucher Clemence, Lacour Thomas, Regaudie De Gioux Aurore, L Helguen Stephane, Maguer Jean-Francois, Reveillon Damien, Hansen Per Juel, Mairet Francis (2023). Quantification of trophic modes using stable isotope tracers (carbon and nitrogen) and flow cytometry in the ichthyotoxic microalgae Prymnesium parvum . Conférence annuelle GDR Phycotox - GIS Cyanobactéries 2023. 23-25 Mai 2023, Nantes .

Janin Sarah, Boucher Clemence, Mairet Francis, Lacour Thomas (2023). Characterization of phagotrophy in the mixotrophic microalga Prymnesium parvum . Conférence annuelle GDR Phycotox - GIS Cyanobactéries 2023. 23-25 Mai 2023, Nantes .

Boucher Clemence, Lacour Thomas, Andre Julie, Reveillon Damien, Hansen Per Juel, Mairet Francis (2022). Prymnesium parvum, a killer and eater of other microalgae . SPF 2022 - Société Phycologique de France. 6 & 7 décembre 2022, Nantes .

Bayen Térence, Coville Jérome, Mairet Francis (2022). Stability and optimization of the chemostat system including a linear coupling term between species . PGMODays 2022 . 29-30 novembre 2022, Palaiseau, France .

Boucher Clemence, Andre Julie, Reveillon Damien, Lacour Thomas, Hansen Per Juel, Mairet Francis (2022). Quantifying the growth and phagotrophic activity of the mixotrophic microalga Prymnesium parvum under different phosphorus conditions . Challenger 150: The Challenger Society Conference 2022. 6-8 September 2022, London .

Baroukh Caroline, Mairet Francis, Bernard Olivier (2022). The paradoxes hidden behind the Droop model highlighted by a metabolic approach . Frontiers In Plant Science , 13, 941230. (16p.) . Publisher's official version : https://doi.org/10.3389/fpls.2022.941230 , Open Access version : https://archimer.ifremer.fr/doc/00788/89995/

Nef Charlotte, Dittami Simon, Kaas Raymond, Briand Enora, Noël Cyril, Mairet Francis, Garnier Matthieu (2022). Sharing Vitamin B12 between Bacteria and Microalgae Does Not Systematically Occur: Case Study of the Haptophyte Tisochrysis lutea . Microorganisms , 10(7), 1337 (18p.) . Publisher's official version : https://doi.org/10.3390/microorganisms10071337 , Open Access version : https://archimer.ifremer.fr/doc/00781/89341/

Bayen Terence, Cazenave-Lacroutz Henri, Coville Jérôme, Mairet Francis (2022). Optimal control of microbial production in the chemostat . Ifac Papersonline , 55(16), 208-213 . Publisher's official version : https://doi.org/10.1016/j.ifacol.2022.09.025 , Open Access version : https://archimer.ifremer.fr/doc/00794/90599/

Yabo Agustin G., Caillau Jean-Baptiste, Gouze Jean-Luc, de Jong Hidde, Mairet Francis (2022). Dynamical Analysis and Optimization of a Generalized Resource Allocation Model of Microbial Growth . Siam Journal On Applied Dynamical Systems , 21(1), 137-165 . Publisher's official version : https://doi.org/10.1137/21M141097X , Open Access version : https://archimer.ifremer.fr/doc/00756/86825/

Mairet Francis, Bayen Térence (2021). The promise of dawn: microalgae photoacclimation as an optimal control problem of resource allocation . Journal Of Theoretical Biology , 515, 110597 (12p.) . Publisher's official version : https://doi.org/10.1016/j.jtbi.2021.110597 , Open Access version : https://archimer.ifremer.fr/doc/00676/78768/

Mairet Francis, Gouzé Jean-Luc, de Jong Hidde (2021). Optimal proteome allocation and the temperature dependence of microbial growth laws . Npj Systems Biology And Applications , 7(1), 14 (11p.) . Publisher's official version : https://doi.org/10.1038/s41540-021-00172-y , Open Access version : https://archimer.ifremer.fr/doc/00686/79829/

Nef Charlotte, Henry Céline, Nicolau Elodie, Bérard Jean-Baptiste, Hervé Fabienne, Caruana Amandine, Kaas Raymond, Mairet Francis, Garnier Matthieu (2020). Cobalamin Scarcity Modifies Carbon Allocation and Impairs DMSP Production Through Methionine Metabolism in the Haptophyte Microalgae Tisochrysis lutea . Frontiers In Marine Science , 7, 569660 (17p.) . Publisher's official version : https://doi.org/10.3389/fmars.2020.569560 , Open Access version : https://archimer.ifremer.fr/doc/00654/76575/

Martinez Carlos, Mairet Francis, Bernard Olivier (2020). Dynamics of the periodically forced light-limited Droop model . Journal Of Differential Equations , 269(4), 3890-3913 . Publisher's official version : https://doi.org/10.1016/j.jde.2020.03.020 , Open Access version : https://archimer.ifremer.fr/doc/00599/71140/

Mairet Francis, Bayen Térence (2020). Parameter Estimation for Dynamic Resource Allocation in Microorganisms: A Bi-level Optimization Problem . Ifac Papersonline , 53(2), 16814-16819 . Publisher's official version : https://doi.org/10.1016/j.ifacol.2020.12.1163 , Open Access version : https://archimer.ifremer.fr/doc/00690/80163/

Martinez Carlos, Ávila Andrés, Mairet Francis, Meier Leslie, Jeison David (2020). Modeling and Analysis of an Absorption Column Connected to a Microalgae Culture . Siam Journal On Applied Mathematics , 80(2), 772-791 . Publisher's official version : https://doi.org/10.1137/18M1225641 , Open Access version : https://archimer.ifremer.fr/doc/00617/72899/

Nef Charlotte, Mairet Francis, Garnier Matthieu (2019). Comment les bactéries et les microalgues interagissent à travers le métabolisme de la vitamine B12 . Colloque & Assemblée Générale de la Société Phycologique de France. 14-15 Novembre 2019, Paris .

Mairet Francis (2019). CISPER: Computational Identification of Switch Points (in a Metabolic Network) within an Environmental Range . FOSBE 2019 - 8th IFAC Conference on Foundations of Systems Biology in Engineering. 15th – 18th October 2019, València, Spain .

Nef Charlotte, Mairet Francis, Kaas Raymond, Garnier Matthieu (2019). How haptophyte microalgae manage vitamin B12 limitation . EPC7 - 7th European Phycological Congress. 25-30 August 2019, Zagreb .

Nef Charlotte, Mairet Francis, Garnier Matthieu (2019). How bacteria and haptophytes interact through vitamin B12 metabolism . EPC7 - 7th European Phycological Congress. 25-30 august 2019, Zagreb .

Mairet Francis, Bernard Olivier (2019). Twelve quick tips for designing sound dynamical models for bioprocesses . Plos Computational Biology , 15(8), e1007222 (8p.) . Publisher's official version : https://doi.org/10.1371/journal.pcbi.1007222 , Open Access version : https://archimer.ifremer.fr/doc/00512/62336/

Nef Charlotte, Jung Sebastien, Mairet Francis, Kaas Raymond, Grizeau Dominique, Garnier Matthieu (2019). How haptophytes microalgae mitigate vitamin B-12 limitation . Scientific Reports , 9(8417), 11p. Publisher's official version : https://doi.org/10.1038/s41598-019-44797-W , Open Access version : https://archimer.ifremer.fr/doc/00504/61523/

Yegorov Ivan, Mairet Francis, de Jong Hidde, Gouze Jean-Luc (2019). Optimal control of bacterial growth for the maximization of metabolite production . Journal Of Mathematical Biology , 78(4), 985-1032 . Publisher's official version : https://doi.org/10.1007/s00285-018-1299-6 , Open Access version : https://archimer.ifremer.fr/doc/00486/59791/

Martinez Carlos, Mairet Francis, Plaza Luis, Sciandra Antoine, Bernard Olivier (2019). Quantifying the potential of microalgae to remove nutrients from wastewater . Ifac Papersonline , 52(26), 287-292 . Publisher's official version : https://doi.org/10.1016/j.ifacol.2019.12.272 , Open Access version : https://archimer.ifremer.fr/doc/00600/71188/

Mairet Francis, Baron Regis (2019). A Physiologically Structured Equation to Consider Quota Heterogeneity in the Droop Model . Ifac Papersonline , 52(26), 275-280 . Publisher's official version : https://doi.org/10.1016/j.ifacol.2019.12.270 , Open Access version : https://archimer.ifremer.fr/doc/00600/71187/

Martínez Carlos, Mairet Francis, Martinon Pierre, Bernard Olivier (2019). Dynamics and control of a periodically forced microalgae culture . Ifac Papersonline , 52(1), 922-927 . Publisher's official version : https://doi.org/10.1016/j.ifacol.2019.06.180 , Open Access version : https://archimer.ifremer.fr/doc/00505/61623/

Cinquemani E., Mairet Francis, Yegorov I., de Jong H., Gouze J. -L. (2019). Optimal control of bacterial growth for metabolite production: The role of timing and costs of control . 2019 18th European Control Conference (ECC), Naples, Italy, 2019, pp. 2657-2662. https://archimer.ifremer.fr/doc/00589/70142/

Martinez Carlos, Mairet Francis, Bernard Olivier (2018). Theory of turbid microalgae cultures. Journal Of Theoretical Biology , 456, 190-200 . Publisher's official version : https://doi.org/10.1016/j.jtbi.2018.07.016 , Open Access version : https://archimer.ifremer.fr/doc/00450/56133/

Mairet Francis, Baroukh Caroline, Berard Jean-Baptiste, Carrier Gregory, Charrier Aurelie, Garnier Matthieu, Kaas Raymond, Lukomska Ewa, Nicolau Elodie, Rouxel Catherine, Schreiber Nathalie, Saint-Jean Bruno, Bernard Olivier, Bougaran Gael (2018). Metabolic modelling of microalgae during nitrogen starvation . ICHA2018 - 18th International Conference on Harmful Algae "From ecosystems to socio-ecosystems". 21-26 october 2018, Nantes, France .

Nef Charlotte, Le Chevanton Myriam, Kaas Raymond, Grizeau Dominique, Mairet Francis, Garnier Matthieu, Bougaran Gael (2018). Bacteria-Microalgae interactions through nitrogen and cobalamin (B12): From Competition to mutualism . ALFF - ALgal Microbiome: Friends and Foes 2018 workshop. 16 august 2018, Szczecin .

Demory David, Combe Charlotte, Hartmann Philipp, Talec Amelle, Pruvost Eric, Hamouda Raouf, Souille Fabien, Lamarea Pierre-Olivier, Bristeau Marie-Odile, Sainte-Marie Jacques, Rabouille Sophie, Mairet Francis, Sciandra Antoine, Bernard Olivier (2018). How do microalgae perceive light in a high-rate pond? Towards more realistic Lagrangian experiments . Royal Society Open Science , 5(5), 180523 (14p.) . Publisher's official version : https://doi.org/10.1098/rsos.180523 , Open Access version : https://archimer.ifremer.fr/doc/00445/55692/

Nef Charlotte, Jung Sebastien, Garnier Matthieu, Nicolau Elodie, Berard Jean-Baptiste, Lukomska Ewa, Mairet Francis, Kaas Raymond, Grizeau Dominique, Bougaran Gael (2018). Characterisation of Tisochrysis lutea metabolic response under B12 limitation (KN) . YAS 2018 - fourth edition of the Young Algaeneers Symposium. May 14-18 2018, Oban, Scotland .

Yegorov Ivan, Mairet Francis, Gouze Jean-Luc (2018). Optimal feedback strategies for bacterial growth with degradation, recycling, and effect of temperature . Optimal Control Applications & Methods , 39(2), 1084-1109 . Publisher's official version : https://doi.org/10.1002/oca.2398 , Open Access version : https://archimer.ifremer.fr/doc/00434/54592/

Mairet Francis (2018). A biomolecular proportional integral controller based on feedback regulations of protein level and activity . Royal Society Open Science , 5(2), 171966 (11p.) . Publisher's official version : https://doi.org/10.1098/rsos.171966 , Open Access version : https://archimer.ifremer.fr/doc/00434/54598/

Martinez Carlos, Bernard Olivier, Mairet Francis (2018). Maximizing microalgae productivity in a light-limited chemostat . Ifac Papersonline , 51(2), 735-740 . Publisher's official version : https://doi.org/10.1016/j.ifacol.2018.04.001 , Open Access version : https://archimer.ifremer.fr/doc/00439/55091/

Mairet Francis (2017). Optimal resource allocation for bacterial growth . PGMODays 2017. November 13-14, 2017, Paris .

Mairet Francis, Bernard Olivier (2017). Robustness of bioprocess feedback control to biodiversity . Aiche Journal , 63(7), 2742-2750 . https://doi.org/10.1002/aic.15604

Bayen T., Mairet Francis (2017). Optimisation of strain selection in evolutionary continuous culture . International Journal Of Control , 90(12), 2748-2759 . Publisher's official version : https://doi.org/10.1080/00207179.2016.1264631 , Open Access version : https://archimer.ifremer.fr/doc/00379/49052/

Mairet Francis, Gouze Jean-Luc (2016). Hybrid Control of a Bioreactor With Quantized Measurements . Ieee Transactions On Automatic Control , 61(5), 1385-1390 . https://doi.org/10.1109/TAC.2015.2471735

Giordano Nils, Mairet Francis, Gouze Jean-Luc, Geiselmann Johannes, de Jong Hidde (2016). Dynamical Allocation of Cellular Resources as an Optimal Control Problem: Novel Insights into Microbial Growth Strategies . Plos Computational Biology , 12(3), e1004802 (1-28) . Publisher's official version : https://doi.org/10.1371/journal.pcbi.1004802 , Open Access version : https://archimer.ifremer.fr/doc/00379/49020/

Bernard Olivier, Mairet Francis, Chachuat Benoit (2016). Modelling of Microalgae Culture Systems with Applications to Control and Optimization . In Microalgae Biotechnology. Volume 153 of the series Advances in Biochemical Engineering/Biotechnology. 2016. ISBN 978-3-319-23807-4. pp 59-87 .

Mairet Francis, Bernard Olivier (2016). The Photoinhibistat: Operating Microalgae Culture under Photoinhibition for Strain Selection . Ifac Papersonline , 49(7), 1068-1073 . https://doi.org/10.1016/j.ifacol.2016.07.344

Jimenez Julie, Latrille Eric, Harmand Jerome, Robles Angel, Ferrer Jose, Gaida Daniel, Wolf Christian, Mairet Francis, Bernard Olivier, Alcaraz-Gonzalez Victor, Mendez-Acosta Hugo, Zitomer Daniel, Totzke Dennis, Spanjers Henri, Jacobi Fabian, Guwy Alan, Dinsdale Richard, Premier Giuliano, Mazhegrane Sofiane, Ruiz-Filippi Gonzalo, Seco Aurora, Ribeiro Thierry, Pauss Andre, Steyer Jean-Philippe (2015). Instrumentation and control of anaerobic digestion processes: a review and some research challenges . Reviews In Environmental Science And Bio-technology , 14(4), 615-648 . https://doi.org/10.1007/s11157-015-9382-6

Bayen T., Mairet Francis, Martinon P., Sebbah M. (2015). Analysis of a periodic optimal control problem connected to microalgae anaerobic digestion . Optimal Control Applications & Methods , 36(6), 750-773 . https://doi.org/10.1002/oca.2127

Mairet Francis, Munoz-Tamayo Rafael, Bernard Olivier (2015). Adaptive control of light attenuation for optimizing microalgae production . Journal Of Process Control , 30, 117-124 . https://doi.org/10.1016/j.jprocont.2015.03.010

Bayen T., Mairet Francis, Mazade M. (2015). Optimal feeding strategy for the minimal time problem of a fed-batch bioreactor with mortality rate . Optimal Control Applications & Methods , 36(1), 77-92 . https://doi.org/10.1002/oca.2102

Bayen Terence, Mazade Marc, Mairet Francis (2015). Analysis of an optimal control problem connected to bioprocesses involving a saturated singular arc . Discrete And Continuous Dynamical Systems-series B , 20(1), 39-58 . https://doi.org/10.3934/dcdsb.2015.20.39

Munoz-Tamayo Rafael, Martinon Pierre, Bougaran Gael, Mairet Francis, Bernard Olivier (2014). Getting the most out of it: Optimal experiments for parameter estimation of microalgae growth models . Journal Of Process Control , 24(6), 991-1001 . Publisher's official version : https://doi.org/10.1016/j.jprocont.2014.04.021 , Open Access version : https://archimer.ifremer.fr/doc/00191/30252/

Mairet Francis, Moisan Marcelo, Bernard Olivier (2014). Interval observer with near optimal adaptation dynamics. Application to the estimation of lipid quota in microalgae . International Journal Of Robust And Nonlinear Control , 24(6), 1142-1157 . https://doi.org/10.1002/rnc.2934

Bayen Terence, Mairet Francis (2014). Optimization of the separation of two species in a chemostat . Automatica , 50(4), 1243-1248 . https://doi.org/10.1016/j.automatica.2014.02.024

Mairet Francis, Moisan Marcelo, Bernard Olivier (2014). Estimation of neutral lipid and carbohydrate quotas in microalgae using adaptive interval observers . Bioprocess And Biosystems Engineering , 37(1), 51-61 . https://doi.org/10.1007/s00449-013-0913-7

Grimaud Ghjuvan Micaelu, Mairet Francis, Bernard Olivier (2014). Modelling thermal adaptation in microalgae : an adaptive dynamics point of view . Ifac Papersonline , 47(3), 4376-4381 . https://doi.org/10.3182/20140824-6-ZA-1003.00982

Mairet Francis, Gouze Jean-Luc (2014). Control of a Bioreactor with Quantized Measurements . Fages F., Piazza C. (eds) Formal Methods in Macro-Biology. FMMB 2014. Lecture Notes in Computer Science, vol 8738. Springer, Cham. pp 47-62 .

Mairet Francis, Bernard Oliver (2014). Robustness of Closed-Loop Control to Biodiversity: a Didactic Example . Ifac Papersonline , 47(3), 5321-5326 . https://doi.org/10.3182/20140824-6-ZA-1003.02193

Bayen Terence, Mairet Francis, Mazade Marc (2014). Minimal time problem for a fed-batch bioreactor with a non admissible singular arc . European Control Conference (ECC), Jun 2014, Strasbourg, France. pp.165-170, 2014 .

Bayen Terence, Mairet Francis (2013). Minimal time control of fed-batch bioreactor with product inhibition . Bioprocess And Biosystems Engineering , 36(10), 1485-1496 . https://doi.org/10.1007/s00449-013-0911-9

Bayen Terence, Gajardo Pedro, Mairet Francis (2013). Optimal Synthesis for the Minimum Time Control Problems of Fed-Batch Bioprocesses for Growth Functions with Two Maxima . Journal Of Optimization Theory And Applications , 158(2), 521-553 . https://doi.org/10.1007/s10957-012-0225-0

Munoz-Tamayo Rafael, Mairet Francis, Bernard Olivier (2013). Optimizing microalgal production in raceway systems . Biotechnology Progress , 29(2), 543-552 . https://doi.org/10.1002/btpr.1699

Bayen Terence, Mairet Francis, Martinon Pierre, Sebbah Matthieu (2013). Optimizing the anaerobic digestion of microalgae in a coupled process . Control Conference (ECC), 2013 European. pp.1-7 .

Munoz-Tamayo Rafael, Mairet Francis, Bernard Olivier (2013). Driving microalgal production in raceway systems to near optimal productivities . Control Conference (ECC), 2013 European. ISBN 978-3-952-41734-8. pp.4184-4189 .

Donoso-Bravo Andres, Mairet Francis (2012). Determining the limiting reaction in anaerobic digestion processes. How has this been tackled? Journal Of Chemical Technology And Biotechnology , 87(10), 1375-1378 . https://doi.org/10.1002/jctb.3890

Mairet Francis, Bernard Olivier, Cameron Elliot, Ras Monique, Lardon Laurent, Steyer Jean-Philippe, Chachuat Benoit (2012). Three-reaction model for the anaerobic digestion of microalgae . Biotechnology And Bioengineering , 109(2), 415-425 . https://doi.org/10.1002/bit.23350

Mairet Francis, Bernard Olivier, Ras Monique, Lardon Laurent, Steyer Jean-Philippe (2011). Modeling anaerobic digestion of microalgae using ADM1 . Bioresource Technology , 102(13), 6823-6829 . https://doi.org/10.1016/j.biortech.2011.04.015

Mairet Francis, Bernard Olivier, Masci Pierre, Lacour Thomas, Sciandra Antoine (2011). Modelling neutral lipid production by the microalga Isochrysis aff. galbana under nitrogen limitation . Bioresource Technology , 102(1), 142-149 . https://doi.org/10.1016/j.biortech.2010.06.138

Mairet Francis, Villon Pierre, Boitel-Conti Michele, Shakourzadeh Khalil (2010). Modeling and Optimization of Hairy Root Growth in Fed-Batch Process . Biotechnology Progress , 26(3), 847-856 . https://doi.org/10.1002/btpr.388

Mairet Francis, Moisan Marcelo, Bernard Olivier (2010). Interval observer-based estimator of specific growth rate in bioreactors . Journal Européen des Systèmes Automatisés , 44(4-5), 493-507 .

Mairet Francis, Sierra Julia, Glorian Virginie, Villon Pierre, Shakourzadeh Khalil, Boitel-Conti Michele (2009). A new approach to define optimized range of medium composition for enhancement of hairy root production in fed-batch process . Bioprocess And Biosystems Engineering , 32(2), 257-265 . https://doi.org/10.1007/s00449-008-0246-0

Mairet Francis, Bernard Olivier (2009). Coupling framers to get enhanced interval observers. Application to growth rate estimation in a photobioreactor . Decision and Control, 2009 held jointly with the 2009 28th Chinese Control Conference. CDC/CCC 2009. Proceedings of the 48th IEEE Conference on. Book Series: IEEE Conference on Decision and Control. pp.7581-7586 .