Jeux de données
2018
Gourmelon Michele, Hervio Heath Dominique, Lozach Solen (2018). Séquençage de génome de souches bactériennes : Salmonella, E.coli, Vibrio spp. https://sextant.ifremer.fr/record/f1a1ee3d-8bd8-4472-b58b-f31d05259c17/
Bibliographie
2024
Sorée Marion, Lozach Solen, Kéomurdjian Natacha, Richard David, Hughes Alexandra, Delbarre-Ladrat Christine, Verrez-Bagnis Véronique, Rincé Alain, Passerini Delphine, Ritchie Jennifer M., Hervio Heath Dominique (2024). Virulence phenotypes differ between toxigenic Vibrio parahaemolyticus isolated from western coasts of Europe . Microbiological Research , 285, 127744 (11p.) . Publisher's official version : https://doi.org/10.1016/j.micres.2024.127744 , Open Access version : https://archimer.ifremer.fr/doc/00888/100022/
2023
Soree Marion, Kolypczuk Laetitia, Hadjiev Emilie, Lozach Solen, Verrez-Bagnis Véronique, Delbarre-Ladrat Christine, Hervio Heath Dominique, Passerini Delphine (2023). Screening of marine lactic acid bacteria for Vibrio parahaemolyticus inhibition and application to depuration in Pacific oysters (Crassostrea gigas) . Journal of Applied Microbiology , 134(2), 1-9 . Publisher's official version : https://doi.org/10.1093/jambio/lxac081 , Open Access version : https://archimer.ifremer.fr/doc/00813/92449/
Sorée Marion, Le Meleder Anna, Maurouard Elise, Lozach Solen, Papin Mathias, Stavrakakis Christophe, Audemard Corinne, Hervio Heath Dominique, Dégremont Lionel (2023). Effect of ploidy level on accumulation and depuration of Vibrio parahaemolyticus in Pacific oyster Crassostrea gigas . Aquaculture , 563(Part 2), 738992 (8p.) . Publisher's official version : https://doi.org/10.1016/j.aquaculture.2022.738992 , Open Access version : https://archimer.ifremer.fr/doc/00800/91244/
2022
Sorée Marion, Delavat François, Lambert Christophe, Lozach Solen, Papin Mathias, Petton Bruno, Passerini Delphine, Dégremont Lionel, Hervio Heath Dominique (2022). Life history of oysters influences Vibrio parahaemolyticus accumulation in Pacific oysters ( Crassostrea gigas ) . Environmental Microbiology , 24(9), 4401-4410 . Publisher's official version : https://doi.org/10.1111/1462-2920.15996 , Open Access version : https://archimer.ifremer.fr/doc/00763/87507/
2021
Garry Pascal, Le Guyader Soizick (2021). Rapport d'activités 2020. Laboratoire Santé Environnement et Microbiologie, Laboratoire National de Référence de Microbiologie des coquillages . RBE/SGMM/LSEM 21-03 . https://archimer.ifremer.fr/doc/00691/80332/
Vincent Hubert Francoise, Wacrenier Candice, Morga Benjamin, Lozach Solen, Quenot Emmanuelle, Mege Mickael, Lecadet Cyrielle, Gourmelon Michele, Hervio-Heath Dominique, Le Guyader Soizick (2021). Passive Samplers, a Powerful Tool to Detect Viruses and Bacteria in Marine Coastal Areas . Frontiers In Microbiology , 12, 631174 (12p.) . Publisher's official version : https://doi.org/10.3389/fmicb.2021.631174 , Open Access version : https://archimer.ifremer.fr/doc/00682/79375/
2020
Guillier Laurent, Gourmelon Michele, Lozach Solen, Cadel-Six Sabrina, Vignaud Marie-Léone, Munck Nanna, Hald Tine, Palma Federica (2020). AB_SA: Accessory genes-Based Source Attribution – tracing the source of Salmonella enterica Typhimurium environmental strains . Microbial Genomics , 6(7), 10p. Publisher's official version : https://doi.org/10.1099/mgen.0.000366 , Open Access version : https://archimer.ifremer.fr/doc/00624/73632/
Garry Pascal, Le Guyader Soizick (2020). Rapport d’activités 2019. Laboratoire Santé Environnement et Microbiologie, Laboratoire National de Référence de Microbiologie des coquillages . RBE/SG2M/LSEM . https://archimer.ifremer.fr/doc/00615/72671/
2019
Hervio Heath Dominique, Aujoulat Fabien, Kolypczuk Laetitia, Ivaniuk Flora, Lozach Solen, Hadjiev Emilie, Soree Marion, Verrez-Bagnis Veronique, Jumas-Bilak Estelle, Delbarre Ladrat Christine, Passerini Delphine (2019). Lactic acid bacteria and Vibrio parahaemolyticus: growth inhibition and virulence attenuation - Application to shellfish products. ICBV 2019 - 8th biennial International Conference on the Biology of Vibrios “The Biology of Vibrios: Genomes to Biology” . 18-20 novembre 2019, Montréal QC, Canada .
Passerini Delphine, Aujoulat Fabien, Kolypczuk Laetitia, Ivaniuk Flora, Fecamp Florian, Lozach Solen, Hadjiev Emilie, Soree Marion, Verrez-Bagnis Veronique, Jumas-Bilak Estelle, Hervio Heath Dominique (2019). Inhibition de vibrions pathogènes humains par des bactéries lactiques et compréhension des mécanismes impliqués . CBL2019, 22ème Colloque du Club des Bactéries Lactiques. 12-14 juin 2019, Caen, France .
Verrez-Bagnis Veronique, Soree Marion, Passerini Delphine, Kolypczuk Laetitia, Marchand Laetitia, Bonnetot Sandrine, Fecamp Florian, Lozach Solen, Hervio Heath Dominique, Delbarre Ladrat Christine (2019). Mining of the biosynthetic mechanisms of Vibrio spp. polysaccharides and potential role in biofilm formation . CBM 13 - 13th Carbohydrate Bioengineering Meeting. 19-22 mai 2019, Toulouse . https://archimer.ifremer.fr/doc/00514/62605/
Desdouits Marion, Garry Pascal, Gourmelon Michele, Hervio Heath Dominique, Hubert Francoise, Kaelin Gaelle, Kergaravat Cedric, Le Mennec Cecile, Le Guyader Soizick, Loiseau Veronique, Lozach Solen, Maillot Jessica, Ollivier Joanna, Parnaudeau Sylvain, Piquet Jean-Come, Quenot Emmanuelle, Rocq Sophie, Schaeffer Julien, Serghine Joelle, Vallade Emilie, Veron Antoine, Wacrenier Candice (2019). Rapport d’activités 2018 – Laboratoire Santé Environnement et Microbiologie. RBE/SG2M/LSEM 18-1 . https://archimer.ifremer.fr/doc/00491/60218/
2018
Rince Alain, Baliere Charlotte, Hervio-Heath Dominique, Cozien Joelle, Lozach Solen, Parnaudeau Sylvain, Le Guyader Francoise S., Le Hello Simon, Giard Jean-Christophe, Sauvageot Nicolas, Benachour Abdellah, Strubbia Sofia, Gourmelon Michele (2018). Occurrence of Bacterial Pathogens and Human Noroviruses in Shellfish-Harvesting Areas and Their Catchments in France . Frontiers In Microbiology , 9, 2443(17p.) . Publisher's official version : https://doi.org/10.3389/fmicb.2018.02443 , Open Access version : https://archimer.ifremer.fr/doc/00461/57243/
Lapegue Sylvie, Bechemin Christian, Le Guyader Soizick, Stavrakakis Christophe, Rivet Florence (2018). Rapport d’activités 2017 de l’unité SG2M, Santé Génétique et Microbiologie des Mollusques . R.RBE/SG2M/2018-01 .
Garry Pascal, Le Guyader Soizick (2018). Rapport d’activités 2017. Laboratoire Santé Environnement et Microbiologie. Laboratoire National de Référence de Microbiologie des coquillages . https://archimer.ifremer.fr/doc/00465/57686/
Jarde Emilie, Jeanneau Laurent, Harrault Loic, Quenot Emmanuelle, Solecki Olivia, Petitjean Patrice, Lozach Solen, Cheve Julien, Gourmelon Michele (2018). Application of a microbial source tracking based on bacterial and chemical markers in headwater and coastal catchments . Science Of The Total Environment , 610-611, 55-63 . Publisher's official version : https://doi.org/10.1016/j.scitotenv.2017.07.235 , Open Access version : https://archimer.ifremer.fr/doc/00395/50597/
2017
Garry Pascal, Hervio Heath Dominique, Le Guyader Soizick (2017). Rapport d’activités 2016. Laboratoire Santé Environnement et Microbiologie, Laboratoire National de Référence de Microbiologie des coquillages . https://archimer.ifremer.fr/doc/00433/54493/
2016
Gourmelon Michele, Lozach Solen, Garry Pascal, Balliere Clémence, Sauvageot Nicolas, Le Hello Simon, Rince Alain (2016). Prevalence and characterization of Salmonella spp. in three shellfish-harvesting areas in France . I3S - International Symposium Salmonella and Salmonellosis. 6-7-8 June 2016, Saint-Malo, France . https://archimer.ifremer.fr/doc/00341/45199/
Garry Pascal, Le Saux Jean-Claude, Hervio Heath Dominique, Le Guyader Soizick (2016). Rapport d’activités 2015. Laboratoire Santé Environnement et Microbiologie. Laboratoire National de Référence de Microbiologie des coquillages . https://archimer.ifremer.fr/doc/00380/49138/
Lapegue Sylvie, Renault Tristan, Bechemin Christian, Le Guyader Soizick, Stavrakakis Christophe, Rivet Florence (2016). Rapport d'activités 2015 de l'Unité SG2M : Santé, Génétique et Microbiologie des Mollusques . https://archimer.ifremer.fr/doc/00319/43055/
2015
Renault Tristan, Lapegue Sylvie, Le Guyader Soizick, Hatt Philippe-Jacques, Rivet Florence (2015). Rapport d'activités 2014 de l'Unité SG2M. Santé, Génétique et Microbiologie des mollusques . https://archimer.ifremer.fr/doc/00283/39455/
Gourmelon Michele, Baliere Charlotte, Caprais Marie-Paule, Cozien Joelle, Garry Pascal, Hervio Heath Dominique, Hubert Celine, Le Saux Jean-Claude, Le Guyader Soizick, Lozach Solen, Parnaudeau Sylvain, Quenot Emmanuelle, Strubia S., Veron Antoine, Baliere Cl., Bruey Q., Giard J-C, Rince I., Jarde E., Harrault L., Jeanneau L., Petitjean P., Cheve Julien, Rince Alain (2015). Recherche de bactéries potentiellement pathogènes et de norovirus dans de zones conchylicoles de Bretagne et Normandie et leurs bassins versants. Identification des sources de contamination fécale . QSPA 2015 - Colloque Qualité et Sécurité des Produits Aquatiques, 17, 18-19 Juin 2015, Boulogne-sur-Mer .
2013
Ebentier Darcy L., Hanley Kaitlyn T., Cao Yiping, Badgley Brian D., Boehm Alexandria B., Ervin Jared S., Goodwin Kelly D., Gourmelon Michele, Griffith John F., Holden Patricia A., Kelty Catherine A., Lozach Solen, McGee Charles, Peed Lindsay A., Raith Meredith, Ryu Hodon, Sadowsky Michael J., Scott Elizabeth A., Domingo Jorge Santo, Schriewer Alexander, Sinigalliano Christopher D., Shanks Orin C., Van De Werfhorst Laurie C., Wang Dan, Wuertz Stefan, Jay Jennifer A. (2013). Evaluation of the repeatability and reproducibility of a suite of qPCR-based microbial source tracking methods . Water Research , 47(18), 6839-6848 . https://doi.org/10.1016/j.watres.2013.01.060
Layton Blythe A., Cao Yiping, Ebentier Darcy L., Hanley Kaitlyn, Balleste Elisenda, Brandao Joao, Byappanahalli Muruleedhara, Converse Reagan, Farnleitner Andreas H., Gentry-Shields Jennifer, Gidley Maribeth L., Gourmelon Michele, Lee Chang Soo, Lee J, Lozach Solen, Madi Tania, Meijer Wim G., Noble Rachel, Peed Lindsay, Reischer Georg H., Rodrigues Raquel, Rose J, Schriewer Alexander, Sinigalliano Chris, Srinivasan Sangeetha, Stewart Jill, Van De Werfhorst Laurie C., Wang Dan, Whitman Richard, Wuertz Stefan, Jay Jenny, Holden Patricia A., Boehm Alexandria B., Shanks Orin, Griffith John F. (2013). Performance of human fecal anaerobe-associated PCR-based assays in a multi-laboratory method evaluation study . Water Research , 47(18), 6897-6908 . https://doi.org/10.1016/j.watres.2013.05.060
Mauffret Aourell, Mieszkin Sophie, Morizur Mael, Alfiansah Yustian Rovi, Lozach Solen, Gourmelon Michele (2013). Recent innovation in microbial source tracking using bacterial real-time PCR markers in shellfish . Marine Pollution Bulletin , 68(1-2), 21-29 . Publisher's official version : https://doi.org/10.1016/j.marpolbul.2012.12.029 , Open Access version : https://archimer.ifremer.fr/doc/00137/24776/
2010
Ifremer, Université de Nantes (2010). Gestion globale des ressources marines et des risques dans les espaces côtiers. Gerrico. Volume 1 : rapport de synthèse. Volume 2 : Fiches actions par axe . https://archimer.ifremer.fr/doc/00136/24733/
Deter Julie, Lozach Solen, Veron Antoine, Chollet Jaufrey, Derrien Annick, Hervio Heath Dominique (2010). Ecology of pathogenic and non-pathogenic Vibrio parahaemolyticus on the French Atlantic coast. Effects of temperature, salinity, turbidity and chlorophyll a . Environmental Microbiology , 12(4), 929-937 . Publisher's official version : https://doi.org/10.1111/j.1462-2920.2009.02136.x , Open Access version : https://archimer.ifremer.fr/doc/00003/11420/
Deter Julie, Lozach Solen, Derrien Annick, Veron Antoine, Chollet Jaufrey, Hervio-Heath Dominique (2010). Chlorophyll a might structure a community of potentially pathogenic culturable Vibrionaceae. Insights from a one-year study of water and mussels surveyed on the French Atlantic coast . Environmental Microbiology Reports , 2(1), 185-191 . Publisher's official version : https://doi.org/10.1111/j.1758-2229.2010.00133.x , Open Access version : https://archimer.ifremer.fr/doc/00008/11928/
2008
Lee R.J., Rangdale R.E., Croci L., Hervio Heath Dominique, Lozach Solen (2008). Bacterial Pathogens in Seafood . In Improving Seafood Products for the Consumer (Edited by T Børresen, Technical University of Denmark, Denmark) . https://archimer.ifremer.fr/doc/00066/17730/
2007
Coutard Francois, Lozach Solen, Pommepuy Monique, Hervio Heath Dominique (2007). Real-time reverse transcription-PCR for transcriptional expression analysis of virulence and housekeeping genes in viable but nonculturable Vibrio parahaemolyticus after recovery of culturability . Applied and environmental microbiology , 73(16), 5183-5189 . Publisher's official version : https://doi.org/10.1128/AEM.02776-06 , Open Access version : https://archimer.ifremer.fr/doc/00000/2787/
Gourmelon Michele, Caprais Marie-Paule, Segura Raphael, Le Mennec Cecile, Lozach Solen, Piriou Jean-Yves, Rince A (2007). Evaluation of two library-independent microbial source tracking methods to identify sources of fecal contamination in french estuaries . Applied and environmental microbiology , 73(15), 4857-4866 . Publisher's official version : https://doi.org/10.1128/AEM.03003-06 , Open Access version : https://archimer.ifremer.fr/doc/00000/3535/
Le Saux Jean-Claude, Hervio Heath Dominique, Pommepuy Monique, Le Guyader Soizick (2007). Toxi-infections alimentaires collectives à coquillages et expertise crise d'Arcachon - Année 2006 . https://archimer.ifremer.fr/doc/00306/41708/
2006
Monfort Patrick, Hervio Heath Dominique, Caprais Marie-Paule, Pommepuy Monique, Annezo Jean-Pierre, Loaec Solen, Le Mennec Cecile, Guillerm Emmanuelle, Boulben Sylviane, Bilien Gwenael, Bonsor Robert, Porter Jonathan, Pickup Roger (2006). Le bassin versant du Bélon : vers une restauration durable de la qualité bactériologique des eaux estuariennes . RST/LER/FBN/CC/06.10 . https://archimer.ifremer.fr/doc/00200/31077/
Gourmelon Michele, Montet M, Lozach Solen, Le Mennec Cecile, Pommepuy Monique, Beutin L, Vernozy Rozand C (2006). First isolation of Shiga toxin 1d producing Escherichia coli variant strains in shellfish from coastal areas in France . Journal of Applied Microbiology , 100(1), 85-97 . Publisher's official version : https://doi.org/10.1111/j.1365-2672.2005.02753.x , Open Access version : https://archimer.ifremer.fr/doc/00000/1096/
2005
Hervio Heath Dominique, Zidane Mohamed, Le Saux Jean-Claude, Lozach Solen, Vaillant V., Le Guyader Soizick, Pommepuy Monique (2005). Toxi-infections alimentaires collectives liées à la consommation de moules contaminées par Vibrio parahaemolyticus : Enquête environnementale . Bulletin Epidémiologique , 1-2 . Open Access version : https://archimer.ifremer.fr/doc/00066/17737/
Coutard Francois, Pommepuy Monique, Loaec Solen, Hervio Heath Dominique (2005). MRNA detection by reverse transcription-PCR for monitoring viability and potential virulence in a pathogenic strain of Vibrio parahaemolyticus in viable but nonculturable state . Journal of Applied Microbiology , 98(4), 951-961 . Publisher's official version : https://doi.org/10.1111/j.1365-2672.2005.02534.x , Open Access version : https://archimer.ifremer.fr/doc/00000/1098/
2002
Fischer Le Saux Marion, Hervio Heath Dominique, Loaec Solen, Colwell Rita, Pommepuy Monique (2002). Detection of cytotoxin-hemolysin mRNA in nonculturable populations of environmental and clinical Vibrio vulnificus strains in artificial seawater . Applied and environmental microbiology , 68(11), 5641-5646 . Publisher's official version : https://doi.org/10.1128/AEM.68.11.5641-5646.2002 , Open Access version : https://archimer.ifremer.fr/doc/00000/1269/