Briand Enora, Garnier Matthieu, Lassudrie Duchesne Malwenn, Noel Cyril, Jauzein Cecile, Labry Claire, Lacour Thomas, Berard Jean-Baptiste, Nef Charlotte, Raimbault Virginie, Sibat Manoella, Schreiber Nathalie (2023). 16S sequencing of a synthetic bacterial community associated with microalgae (Alexandrium minutum and Prymnesium parvum). IFREMER. https://doi.org//10.12770/f5cc068f-1080-41bf-ab6c-e05430ca54d5

Garnier Matthieu, Briand Enora (2023). To what extent and how does the phytoplankton choose their bacterial partners. A reductionist approach used in toxic microalgae. EPC 2023 - 8th European Phycological Congress /8ème Congrès Phycologique Européen “Opportunités scientifiques pour une révolution globale dans le domaine des Algues”. 20-26 August 2023, Brest, France .

Garnier Matthieu, Briand Enora (2023). Etude des interactions microalgues-bactéries à travers des approches réductionnistes. World Microbiome Day / 1ère journée du Microbiome. 29 Juin 2023, Nantes, France .

Nef Charlotte, Dittami Simon, Kaas Raymond, Briand Enora, Noël Cyril, Mairet Francis, Garnier Matthieu (2022). Sharing Vitamin B12 between Bacteria and Microalgae Does Not Systematically Occur: Case Study of the Haptophyte Tisochrysis lutea . Microorganisms , 10(7), 1337 (18p.) . Publisher's official version : https://doi.org/10.3390/microorganisms10071337 , Open Access version : https://archimer.ifremer.fr/doc/00781/89341/

Pajot Anne, Lavaud Johann, Carrier Gregory, Garnier Matthieu, Saint-Jean Bruno, Rabilloud Noémie, Baroukh Caroline, Bérard Jean-Baptiste, Bernard Olivier, Marchal Luc, Nicolau Elodie (2022). The Fucoxanthin Chlorophyll a/c-Binding Protein in Tisochrysis lutea: Influence of Nitrogen and Light on Fucoxanthin and Chlorophyll a/c-Binding Protein Gene Expression and Fucoxanthin Synthesis . Frontiers In Plant Science , 13, 830069 (17p.) . Publisher's official version : https://doi.org/10.3389/fpls.2022.830069 , Open Access version : https://archimer.ifremer.fr/doc/00752/86392/

Remize Marine, Planchon Frederic, Garnier Matthieu, Loh Ai Ning, Le Grand Fabienne, Bideau Antoine, Lambert Christophe, Corvaisier Rudolph, Volety Aswani, Soudant Philippe (2022). A 13CO2 Enrichment Experiment to Study the Synthesis Pathways of Polyunsaturated Fatty Acids of the Haptophyte Tisochrysis lutea . Marine Drugs , 20(1), 22 (18p.) . Publisher's official version : https://doi.org/10.3390/md20010022 , Open Access version : https://archimer.ifremer.fr/doc/00742/85353/

Gourmelon Michele, Siano Raffaele, Jeanthon Christian, Garnier Matthieu, Malo Florent, Noel Cyril, Serghine Joelle, Philippe Aurelie, Hafdane Katouar, Vitre Thomas, Briand Enora (2021). History of a couple: Alexandrium minutum and its associated bacterium in both natural and cultivated populations . ICHA 2021 - 19th International Conference on Harmful Algae. October 10-15, Mexico .

Nef Charlotte, Henry Céline, Nicolau Elodie, Bérard Jean-Baptiste, Hervé Fabienne, Caruana Amandine, Kaas Raymond, Mairet Francis, Garnier Matthieu (2020). Cobalamin Scarcity Modifies Carbon Allocation and Impairs DMSP Production Through Methionine Metabolism in the Haptophyte Microalgae Tisochrysis lutea . Frontiers In Marine Science , 7, 569660 (17p.) . Publisher's official version : https://doi.org/10.3389/fmars.2020.569560 , Open Access version : https://archimer.ifremer.fr/doc/00654/76575/

Nef Charlotte, Mairet Francis, Garnier Matthieu (2019). Comment les bactéries et les microalgues interagissent à travers le métabolisme de la vitamine B12 . Colloque & Assemblée Générale de la Société Phycologique de France. 14-15 Novembre 2019, Paris .

Nef Charlotte, Mairet Francis, Kaas Raymond, Garnier Matthieu (2019). How haptophyte microalgae manage vitamin B12 limitation . EPC7 - 7th European Phycological Congress. 25-30 August 2019, Zagreb .

Nef Charlotte, Mairet Francis, Garnier Matthieu (2019). How bacteria and haptophytes interact through vitamin B12 metabolism . EPC7 - 7th European Phycological Congress. 25-30 august 2019, Zagreb .

Nef Charlotte, Jung Sebastien, Mairet Francis, Kaas Raymond, Grizeau Dominique, Garnier Matthieu (2019). How haptophytes microalgae mitigate vitamin B-12 limitation . Scientific Reports , 9(8417), 11p. Publisher's official version : https://doi.org/10.1038/s41598-019-44797-W , Open Access version : https://archimer.ifremer.fr/doc/00504/61523/

Garnier Matthieu, Rogniaux Helene, Le Grand Fabienne, Bougaran Gael, Saint-Jean Bruno (2018). How nitrogen availability drives lipid composition in the haptophyte Tisochrysis lutea : new highlights . Lipids in the Ocean "Structure, function, ecological role and applications". 20-22 November 2018, Brest, France.

Mairet Francis, Baroukh Caroline, Berard Jean-Baptiste, Carrier Gregory, Charrier Aurelie, Garnier Matthieu, Kaas Raymond, Lukomska Ewa, Nicolau Elodie, Rouxel Catherine, Schreiber Nathalie, Saint-Jean Bruno, Bernard Olivier, Bougaran Gael (2018). Metabolic modelling of microalgae during nitrogen starvation . ICHA2018 - 18th International Conference on Harmful Algae "From ecosystems to socio-ecosystems". 21-26 october 2018, Nantes, France .

Nef Charlotte, Le Chevanton Myriam, Kaas Raymond, Grizeau Dominique, Mairet Francis, Garnier Matthieu, Bougaran Gael (2018). Bacteria-Microalgae interactions through nitrogen and cobalamin (B12): From Competition to mutualism . ALFF - ALgal Microbiome: Friends and Foes 2018 workshop. 16 august 2018, Szczecin .

Jung Sebastien, Nef Charlotte, Garnier Matthieu, Kaas Raymond, Bougaran Gael (2018). Analysis of Tisochrysis lutea (Haptophyceae) metabolic response during B12 limitation & repletion by qPCR approach . Journées Scientifiques de l'Université de Nantes. 1er juin 2018, Nantes .

Nef Charlotte, Jung Sebastien, Garnier Matthieu, Nicolau Elodie, Berard Jean-Baptiste, Lukomska Ewa, Mairet Francis, Kaas Raymond, Grizeau Dominique, Bougaran Gael (2018). Characterisation of Tisochrysis lutea metabolic response under B12 limitation (KN) . YAS 2018 - fourth edition of the Young Algaeneers Symposium. May 14-18 2018, Oban, Scotland .

Nef Charlotte (2017). Analyse des interactions entre une bactérie productrice de vitamine B12 et la microalgue Tisochrysis lutea . Journée des Doctorants Centre Atlantique de l'Ifremer. 17 octobre 2018, Nantes .

Ben Amor Faten, Elleuch Fatma, Ben Hlima Hajer, Garnier Matthieu, Saint-Jean Bruno, Barkallah Mohamed, Pichon Chantal, Abdelkafi Slim, Fendri Imen (2017). Proteomic Analysis of the Chlorophyta Dunaliella New Strain AL-1 Revealed Global Changes of Metabolism during High Carotenoid Production . Marine Drugs , 15(9), 293 (1-16) . Publisher's official version : https://doi.org/10.3390/md15090293 , Open Access version : https://archimer.ifremer.fr/doc/00402/51398/

Garnier Matthieu, Rogniaux H, Carrier Gregory, Berard Jean-Baptiste, Le Grand Fabienne, Cadoret Jean-Paul, Bougaran Gael, Saint-Jean Bruno (2017). Use of mutant strain, ecophysiological studies, and deep proteomic analysis reveal mechanisms of nitrogen acclimation and carbon partitioning in the haptophyte Tisochrysis lutea . IPC 11 - 11th International Phycologycal Congress “Challenges of the molecular era for algal research and the promise of bioprospecting”. August 13 to 19 2017, Szczecin, Poland .

Garnier Matthieu, Rogniaux H, Carrier Gregory, Berard Jean-Baptiste, Le Grand Fabienne, Lukomska Ewa, Rouxel Catherine, Schreiber Nathalie, Cadoret Jean-Paul, Bougaran Gael, Saint-Jean Bruno (2017). High sensibility to nitrogen and specific regulation of proteins involved carbon partitioning drive lipid over accumulation in Tisochrysis lutea 2X strain . ISAP 2017 - 6th Congress of the International Society for Applied Phycology. 18th to 23rd June 2017, Nantes .

Nef Charlotte, Garnier Matthieu, Kaas Raymond, Grizeau Dominique, Bougaran Gael (2017). Selection of vitamin B12-producing bacteria for improvement of Tisochrysis lutea (Haptophyceae) cultures . ISAP - 6th Congress of the International Society for Applied Phycology. 18th to 23rd june 2018, Nantes .

Nef Charlotte (2017). Analyse des interactions entre une bactérie productrice de vitamine B12(cobalamine) et la microalgue Tisochrysis lutea (Haptophyceae) . Colloque annuel de la Société Phycologique de France (SPF). 28 mars 2017, Paris, France .

Garnier Matthieu, Bougaran Gael, Pavlovic Marija, Berard Jean-Baptiste, Carrier Gregory, Charrier Aurelie, Le Grand Fabienne, Lukomska Ewa, Rouxel Catherine, Schreiber Nathalie, Cadoret Jean-Paul, Rogniaux Helene, Saint-Jean Bruno (2016). Use of a lipid rich strain reveals mechanisms of nitrogen limitation and carbon partitioning in the haptophyte Tisochrysis lutea . Algal Research-biomass Biofuels And Bioproducts , 20, 229-248 . Publisher's official version : https://doi.org/10.1016/j.algal.2016.10.017 , Open Access version : https://archimer.ifremer.fr/doc/00356/46702/

Le Chevanton Myriam, Garnier Matthieu, Lukomska Ewa, Schreiber Nathalie, Cadoret Jean-Paul, Saint-Jean Bruno, Bougaran Gael (2016). Effects of nitrogen limitation on Dunaliella sp.–Alteromonas sp. interactions: from mutualistic to competitive relationships. Frontiers in Marine Science , 3(123), 1-11 . Publisher's official version : https://doi.org/10.3389/fmars.2016.00123 , Open Access version : https://archimer.ifremer.fr/doc/00344/45529/

Garnier Matthieu (2016). Allocation du carbone et métabolisme azoté chez l'haptophyte Tisochrysis lutea . PhD Thesis , Université de Nantes . https://archimer.ifremer.fr/doc/00353/46378/

Garnier Matthieu, Bougaran Gael, Pavlovic M, Berard Jean-Baptiste, Carrier Gregory, Charrier Aurelie, Le Grand Fabienne, Lukomska Ewa, Rouxel Catherine, Schreiber Nathalie, Cadoret Jean-Paul, Rogniaux Helene, Saint-Jean Bruno (2015). Tisochrysis. lutea 2Xc1 strain is so fat. Why? EPC6 - 6th European Phycological Congress. 23-28 August 2015, London .

Charrier Aurelie Georgette, Berard Jean-Baptiste, Bougaran Gael, Carrier Gregory, Lukomska Ewa, Schreiber Nathalie, Fournier Flora, Charrier Aurelie, Rouxel Catherine, Garnier Matthieu, Cadoret Jean-Paul, Saint-Jean Bruno (2015). High-affinity nitrate/nitrite transporter genes (Nrt2) in Tisochrysis lutea: identification and expression analyses reveal some interesting specificities of Haptophyta microalgae . Physiologia Plantarum , 154(4), 572-590 . Publisher's official version : https://doi.org/10.1111/ppl.12330 , Open Access version : https://archimer.ifremer.fr/doc/00253/36467/

Carrier Gregory, Berard Jean-Baptiste, Rouxel Catherine, Garnier Matthieu, Saint-Jean Bruno, Bougaran Gael (2014). Dynamique du génome et du phénotype de Tysochrysis lutea en réponses à des stress abiotiques utilisés en sélection variétale . Colloque annuel de la Société Phycologique de France. 24 Novembre 2014, Paris, France .

Carrier Gregory, Garnier Matthieu, Le Cunff Loic, Bougaran Gael, Probert Ian, de Vargas Colomban, Corre Erwan, Rouxel Catherine, Charrier Aurelie, Saint-Jean Bruno, Cadoret Jean-Paul (2014). Comparative transcriptome of wild type and selected strains of the microalgae Tisochrysis lutea provides insights into the genetic basis, lipid metabolism and the life cycle . Alg'n'Chem 2014 - Algae, new resources for Industry ? March 31 - April 3, 2014 Montpellier - France.

Garnier Matthieu, Carrier Gregory, Rogniaux Helene, Nicolau Elodie, Bougaran Gael, Saint-Jean Bruno, Cadoret Jean-Paul (2014). Comparative proteomics reveals proteins impacted by nitrogen deprivation in wild-type and high lipid-accumulating mutant strains of Tisochrysis lutea . Journal Of Proteomics , 105, 107-120 . Publisher's official version : https://doi.org/10.1016/j.jprot.2014.02.022 , Open Access version : https://archimer.ifremer.fr/doc/00179/29012/

Carrier Gregory, Garnier Matthieu, Le Cunff L, Bougaran Gael, Probert Ian, de Vargas Colomban, Corre Erwan, Rouxel Catherine, Charrier Aurelie, Saint-Jean Bruno, Cadoret Jean-Paul (2014). Comparative Transcriptome of Wild Type and Selected Strains of Tisochrysis lutea Provides Insights into the Genetic Basis, Lipid Metabolism and the Life Cycle . YAS2014 : Young Algaeneers symposium 2014. 3-5 Apr 2014 Montpellier-Narbonne (France) .

Carrier Gregory, Garnier Matthieu, Le Cunff Loic, Bougaran Gael, Probert Ian, de Vargas Colomban, Corre E, Cadoret Jean-Paul, Saint-Jean Bruno (2014). Comparative Transcriptome of Wild Type and Selected Strains of the Microalgae Tisochrysis lutea Provides Insights into the Genetic Basis, Lipid Metabolism and the Life Cycle . Plos One , 9(1), - . Publisher's official version : https://doi.org/10.1371/journal.pone.0086889 , Open Access version : https://archimer.ifremer.fr/doc/00175/28662/

Cadoret Jean-Paul, Bougaran Gael, Berard Jean-Baptiste, Carrier Gregory, Charrier Aurelie, Coulombier Noemie, Garnier Matthieu, Kaas Raymond, Le Dean Loic, Lukomska Ewa, Nicolau Elodie, Rouxel Catherine, Saint-Jean Bruno, Schreiber Nathalie (2014). Microalgues et Biotechnologie . In Valorisation et économie des ressources marines. Volume 4. Série Mer et Océan dirigée par André Mariotti sous la direction d'André Monaco et Patrick Prouzet. 2014. ISBN : 978-1-78405-003-0 . Chapitre 2, pp.65-112 .

Garnier Matthieu (2013). Use of selected strain to study nitrogen physiology in relation to lipid accumulation. Tisochrysis lutea as a promising model? Journées Société Phycologique de France. 16-18 décembre 2013, Roscoff .

Garnier Matthieu, Carrier Gregory, Rogniaux Helene, Nicolau Elodie, Bougaran Gael, Saint-Jean Bruno, Cadoret Jean-Paul (2013). Use comparative proteomics on a selected microalgae provides candidates for biofuel production. EuPA 2013, 14-17 Octobre 2013, Saint-Malo, France . https://archimer.ifremer.fr/doc/00176/28735/

Le Chevanton Myriam, Garnier Matthieu, Bougaran Gael, Schreiber Nathalie, Lukomska Ewa, Berard Jean-Baptiste, Fouilland E., Bernard Olivier, Cadoret Jean-Paul (2013). Screening and selection of growth-promoting bacteria for Dunaliella cultures . Algal Research-biomass Biofuels And Bioproducts , 2(3), 212-222 . Publisher's official version : https://doi.org/10.1016/j.algal.2013.05.003 , Open Access version : https://archimer.ifremer.fr/doc/00142/25334/

Vasseur Christophe, Bougaran Gael, Garnier Matthieu, Hamelin Jerome, Leboulanger Christophe, Le Chevanton Myriam, Mostajir Behzad, Sialve Bruno, Steyer Jean-Philippe, Fouilland Eric (2012). Carbon conversion efficiency and population dynamics of a marine algae–bacteria consortium growing on simplified synthetic digestate: First step in a bioprocess coupling algal production and anaerobic digestion . Bioresource Technology , 119, 79-87 . Publisher's official version : https://doi.org/10.1016/j.biortech.2012.05.128 , Open Access version : https://archimer.ifremer.fr/doc/00085/19642/

Cadoret Jean-Paul, Garnier Matthieu, Saint-Jean Bruno (2012). Microalgae, Functional Genomics and Biotechnology . Advances in Botanical Research , 64, 285-341 . Publisher's official version : https://doi.org/10.1016/B978-0-12-391499-6.00008-6 , Open Access version : https://archimer.ifremer.fr/doc/00125/23602/

Garnier Matthieu, Matamoros Sebastien, Chevret Didier, Pilet Marie-France, Leroi Francoise, Tresse Odile (2010). Adaptation to Cold and Proteomic Responses of the Psychrotrophic Biopreservative Lactococcus piscium Strain CNCM I-4031 . Applied And Environmental Microbiology , 76(24), 8011-8018 . Publisher's official version : https://doi.org/10.1128/AEM.01331-10 , Open Access version : https://archimer.ifremer.fr/doc/00019/13047/

Azandegbe Afi, Garnier Matthieu, Andrieux Francoise, Kerouel Roger, Philippon Xavier, Nicolas Jean-Louis (2010). Occurrence and seasonality of Vibrio aestuarianus in sediment and Crassostrea gigas haemolymph at two oyster farms in France . Diseases Of Aquatic Organisms , 91(3), 213-221 . Publisher's official version : https://doi.org/10.3354/dao02253 , Open Access version : https://archimer.ifremer.fr/doc/00017/12813/

Bougaran Gael, Garnier Matthieu, Saint-Jean Bruno, Schreiber Nathalie, Cadoret Jean-Paul (2010). Intégration d’outils moléculaires et biochimiques pour l’étude de la physiologie des microalgues : Exemple du métabolisme azoté chez Isochrysis affinis galbana. Colloque "ALGUES, Filières du Futur !", 17 au 19 nov. 2010, Parc Techno. Biocitech, Paris .

Le Chevanton Myriam, Bougaran Gael, Garnier Matthieu, Schreiber Nathalie, Berard Jean-Baptiste, Kaas Raymond, Saint-Jean Bruno, Fouilland Eric, Cadoret Jean-Paul (2010). Sélection de souches bactériennes d’intérêt pour la culture de microalgues . Colloque "ALGUES, Filières du Futur !", 17 au 19 nov. 2010, Parc Techno. Biocitech, Paris .

Garnier Matthieu (2009). Effet du froid sur le protéome de Lactococcus piscium EU2241, souche psychrotolérante d'intérêt pour la bio-protection de produits de la mer semi-préservés .

Garnier Matthieu, Labreuche Yannick, Nicolas Jean-Louis (2008). Molecular and phenotypic characterization of Vibrio aestuarianus subsp francensis subsp nov., a pathogen of the oyster Crassostrea gigas . Systematic and Applied Microbiology , 31(5), 358-365 . Publisher's official version : https://doi.org/10.1016/j.syapm.2008.06.003 , Open Access version : https://archimer.ifremer.fr/doc/00000/4961/

Garnier Matthieu, Labreuche Yannick, Garcia Celine, Robert Maeva, Nicolas Jean-Louis (2007). Evidence for the involvement of pathogenic bacteria in summer mortalities of the Pacific oyster Crassostrea gigas . Microbial Ecology , 53(2), 187-196 . Publisher's official version : https://doi.org/10.1007/s00248-006-9061-9 , Open Access version : https://archimer.ifremer.fr/doc/00000/2406/

Pouvreau Stephane, Tiapari Jerome, Gangnery Aline, Lagarde Franck, Garnier Matthieu, Teissier Hinano, Haumani G, Buestel Dominique, Bodoy Alain (2000). Growth of the black-lip pearl oyster, Pinctada margaritifera, in suspended culture under hydrobiological conditions of Takapoto lagoon (French Polynesia) . Aquaculture , 184(1-2), 133-154 . Publisher's official version : https://doi.org/10.1016/S0044-8486(99)00319-1 , Open Access version : https://archimer.ifremer.fr/doc/00000/381/

Pouvreau Stephane, Gangnery Aline, Tiapari Jerome, Lagarde Franck, Garnier Matthieu, Bodoy Alain (2000). Gametogenic cycle and reproductive effort of the tropical blacklip pearl oyster, Pinctada margaritifera (Bivalvia : Pteriidae), cultivated in Takapoto atoll (French Polynesia) . Aquatic Living Resources , 13(1), 37-48 . Publisher's official version : https://doi.org/10.1016/S0990-7440(00)00135-2 , Open Access version : https://archimer.ifremer.fr/doc/00000/1391/