Dispersal and barriers to gene flow in marine environment: implications for biodiversity, and influence on the evolution of marine organisms.
Conservation of threatened species or habitats: impact of anthropogenic disturbances or activities on the evolution and fate of populations or species.
Influence of mating system and clonality on the ecology and evolution of populations and species.
Analysis of metapopulations or species clusters as complex systems in order to retrace to infer evolutionary pathways.
2021
Stoeckel Solenn, Porro Barbara,
Arnaud‐haond Sophie The discernible and hidden effects of clonality on the genotypic and genetic states of populations: improving our estimation of clonal rates .
Molecular Ecology Resources IN PRESS .
https://doi.org/10.1111/1755-0998.13316
2020
Jueterbock Alexander, Boström Christoffer, Coyer James A., Olsen Jeanine L., Kopp Martina, Dhanasiri Anusha K. S., Smolina Irina,
Arnaud-Haond Sophie, Van De Peer Yves, Hoarau Galice (2020).
The Seagrass Methylome Is Associated With Variation in Photosynthetic Performance Among Clonal Shoots .
Frontiers In Plant Science , 11(571646), 19p. Publisher's official version :
https://doi.org/10.3389/fpls.2020.571646 , Open Access version :
https://archimer.ifremer.fr/doc/00652/76375/
Arnaud-Haond Sophie, Stoeckel Solenn, Bailleul Diane (2020).
New insights into the population genetics of partially clonal organisms: when seagrass data meet theoretical expectations .
Molecular Ecology , 29(17), 3248-3260 .
https://doi.org/10.1111/mec.15532
Nikolic Natacha, Montes Iratxe, Lalire Maxime, Puech Alexis, Bodin Nathalie,
Arnaud-Haond Sophie, Kerwath Sven, Corse Emmanuel, Gaspar Philippe, Hollanda Stéphanie,
Bourjea Jerome, West Wendy,
Bonhommeau Sylvain (2020).
Connectivity and population structure of albacore tuna across southeast Atlantic and southwest Indian Oceans inferred from multidisciplinary methodology .
Scientific Reports , 10(1), 15657 (17p.) . Publisher's official version :
https://doi.org/10.1038/s41598-020-72369-w , Open Access version :
https://archimer.ifremer.fr/doc/00653/76483/
Brandt Miriam, Trouche Blandine, Henry Nicolas, Liautard-Haag Cathy, Maignien Lois, De Vargas Colomban, Wincker Patrick, Poulain Julie,
Zeppilli Daniela,
Arnaud-Haond Sophie (2020).
An Assessment of Environmental Metabarcoding Protocols Aiming at Favoring Contemporary Biodiversity in Inventories of Deep-Sea Communities .
Frontiers In Marine Science , 7, 234 (12p.) . Publisher's official version :
https://doi.org/10.3389/fmars.2020.00234 , Open Access version :
https://archimer.ifremer.fr/doc/00630/74165/
Morato Telmo, González‐irusta José‐manuel, Dominguez‐carrió Carlos, Wei Chih‐lin, Davies Andrew, Sweetman Andrew K., Taranto Gerald H., Beazley Lindsay, García‐alegre Ana, Grehan Anthony,
Laffargue Pascal, Murillo Francisco Javier, Sacau Mar,
Vaz Sandrine, Kenchington Ellen,
Arnaud-Haond Sophie, Callery Oisín, Chimienti Giovanni, Cordes Erik, Egilsdottir Hronn, Freiwald André, Gasbarro Ryan, Gutiérrez‐zárate Cristina, Gianni Matthew, Gilkinson Kent, Wareham Hayes Vonda E., Hebbeln Dierk, Hedges Kevin, Henry Lea‐anne, Johnson David, Koen‐alonso Mariano, Lirette Cam, Mastrototaro Francesco,
Menot Lenaick, Molodtsova Tina, Durán Muñoz Pablo, Orejas Covadonga, Pennino Maria Grazia, Puerta Patricia, Ragnarsson Stefán Á., Ramiro‐sánchez Berta, Rice Jake, Rivera Jesús, Roberts J. Murray, Ross Steve W., Rueda José L., Sampaio Íris, Snelgrove Paul, Stirling David, Treble Margaret A., Urra Javier, Vad Johanne, Oevelen Dick, Watling Les, Walkusz Wojciech, Wienberg Claudia,
Woillez Mathieu, Levin Lisa A., Carreiro‐silva Marina (2020).
Climate‐induced changes in the suitable habitat of cold‐water corals and commercially important deep‐sea fishes in the North Atlantic .
Global Change Biology , 26(4), 2181-2202 . Publisher's official version :
https://doi.org/10.1111/gcb.14996 , Open Access version :
https://archimer.ifremer.fr/doc/00610/72211/
Puerta Patricia, Johnson Clare, Carreiro-Silva Marina, Henry Lea-Anne, Kenchington Ellen, Morato Telmo, Kazanidis Georgios, Luis Rueda Jose, Urra Javier, Ross Steve, Wei Chih-Lin, Manuel Gonzalez-Irusta Jose,
Arnaud-Haond Sophie, Orejas Covadonga (2020).
Influence of Water Masses on the Biodiversity and Biogeography of Deep-Sea Benthic Ecosystems in the North Atlantic .
Frontiers In Marine Science , 7(239), 25p. Publisher's official version :
https://doi.org/10.3389/fmars.2020.00239 , Open Access version :
https://archimer.ifremer.fr/doc/00628/74006/
Usandizaga Sara, Buschmann Alejandro H., Camus Carolina, Kappes José Luis,
Arnaud-Haond Sophie, Mauger Stéphane, Valero Myriam, Guillemin Marie Laure
Better off alone? Compared performance of monoclonal and polyclonal stands of a cultivated red alga growth .
Evolutionary Applications IN PRESS . Publisher's official version :
https://doi.org/10.1111/eva.12908 , Open Access version :
https://archimer.ifremer.fr/doc/00605/71727/
Nikolic Natacha, Devloo-Delva Floriaan, Bailleul Diane, Noskova Ekaterina, Rougeux Clément, Liautard-Haag Cathy, Hassan Mohamad, Marie Amandine, Borsa Philippe, Feutry Pierre, Grewe Peter, Davies Campbell, Farley Jessica, Fernando Daniel, Biton Porsmoguer Sébastien,
Poisson Francois, Parker Denham, Aulich Jorden, Lansdell Matt, Marsac Francis,
Arnaud-Haond Sophie (2020).
Genome scans discriminate independent populations of the blue shark Prionace glauca . WPEB16 - 15th Working Party on Ecosystems and Bycatch. 07/09/2020 -10/09/2020, Online.IOTC-2020-WPEB16-14, 18p.
https://archimer.ifremer.fr/doc/00645/75701/
2019
Cruaud Perrine, Decker Carole,
Olu Karine,
Arnaud-Haond Sophie, Papot Claire, Le Baut Jocelyn, Vigneron Adrien,
Khripounoff Alexis,
Gayet Nicolas,
Cathalot Cecile,
Caprais Jean-Claude,
Pignet Patricia,
Godfroy Anne,
Cambon Bonavita Marie-Anne (2019).
Ecophysiological differences between vesicomyid species and metabolic capabilities of their symbionts influence distribution patterns of the deep‐sea clams .
Marine Ecology-an Evolutionary Perspective , 40(3), e12541 (16p.) . Publisher's official version :
https://doi.org/10.1111/maec.12541 , Open Access version :
https://archimer.ifremer.fr/doc/00493/60426/
Boavida Joana, Becheler Ronan, Choquet Marvin, Frank Norbert, Taviani Marco,
Bourillet Jean-Francois, Meistertzheim Anne‐leila, Grehan Anthony, Savini Alessandra,
Arnaud-Haond Sophie (2019).
Out of the Mediterranean? Post‐glacial colonization pathways varied among cold‐water coral species .
Journal Of Biogeography , 46(5), 915-931 . Publisher's official version :
https://doi.org/10.1111/jbi.13570 , Open Access version :
https://archimer.ifremer.fr/doc/00487/59864/
Riquet Florentine, Liautard-Haag Cathy, Woodall Lucy, Bouza Carmen, Louisy Patrick, Hamer Bojan, Otero-Ferrer Francisco, Aublanc Philippe, Beduneau Vickie, Briard Olivier, El Ayari Tahani, Hochscheid Sandra, Belkhir Khalid,
Arnaud-Haond Sophie, Gagnaire Pierre-Alexandre, Bierne Nicolas (2019).
Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages .
Evolution , 73(4), 817-835 .
https://doi.org/10.1111/evo.13696
Poisson Francois,
Arnaud-Haond Sophie, Demarcq Herve,
Metral Luisa,
Brisset Blandine, Cornella Delphine, Wending Bertrand (2019).
French Bluefin Tuna Longline Fishery Bycatch Programme . In Komatsu T., Ceccaldi HJ., Yoshida J., Prouzet P., Henocque Y. (eds) Oceanography Challenges to Future Earth. Springer, Cham. ISBN 978-3-030-00137-7 ISBN 978-3-030-00138-4 (eBook) https://doi.org/10.1007/978-3-030-00138-4. Chap. 31 pp.401-405 (Springer Nature) .
Boavida Joana, Becheler Ronan, Addamo Anna Maria, Sylvestre Florent, Arnaud-Haond Sophie (2019). Past, Present and Future Connectivity of Mediterranean Cold-Water Corals: Patterns, Drivers and Fate in a Technically and Environmentally Changing World . In Orejas C., Jiménez C. (eds) Mediterranean Cold-Water Corals: Past, Present and Future. Understanding the Deep-Sea Realms of Coral. 2019. Print ISBN 978-3-319-91607-1 Online ISBN 978-3-319-91608-8 . Part of the Coral Reefs of the World book series (CORW, volume 9). Chap.31, pp.357-372 (Springer Science and Business Media LLC) .
Bierne Nicolas,
Arnaud-Haond Sophie (2019).
Comprendre et inférer la connectivité marine pour mieux gérer les ressources .
Les dossiers d'AGROPOLIS International. Compétences de la communauté scientifique en région Occitanie , (24), 33 . Open Access version :
https://archimer.ifremer.fr/doc/00487/59820/
2018
Dussart Caroline, Brandt Miriam,
Quintric Laure,
Arnaud-Haond Sophie (2018).
Projet Pourquoi pas les abysses – WP2. Livrables : D2.6.9 Installation des suites bioinformatiques sous Datarmo. D2-6-10 Comparaison des différentes méthodes de regroupement (« clustering ») et de correction des erreurs de sequençage. D2.6.11 Script d’analyses . D2.6.9 ; D2.6.10 ; D.2.6.11 .
Van Dover C. L.,
Arnaud-Haond Sophie, Gianni M., Helmreich S., Huber J. A., Jaeckel A. L., Metaxas A., Pendleton L. H., Petersen S., Ramirez-Llodra E., Steinberg P. E., Tunnicliffe V., Yamamoto H. (2018).
Scientific rationale and international obligations for protection of active hydrothermal vent ecosystems from deep-sea mining .
Marine Policy , 90, 20-28 . Publisher's official version :
https://doi.org/10.1016/j.marpol.2018.01.020 , Open Access version :
https://archimer.ifremer.fr/doc/00425/53627/
2017
Arnaud-Haond Sophie,
Van Den Beld Inge, Becheler Ronan, Orejas C.,
Menot Lenaick, Frank N., Grehan A.,
Bourillet Jean-Francois (2017).
Two “pillars” of cold-water coral reefs along Atlantic European margins: Prevalent association of Madrepora oculata with Lophelia pertusa, from reef to colony scale .
Deep-sea Research Part Ii-topical Studies In Oceanography , 145, 110-119 . Publisher's official version :
https://doi.org/10.1016/j.dsr2.2015.07.013 , Open Access version :
https://archimer.ifremer.fr/doc/00274/38530/
Becheler Ronan, Masson Jean-Pierre,
Arnaud-Haond Sophie, Halkett Fabien, Mariette Stephanie, Guillemin Marie-Laure, Valero Myriam, Destombe Christophe, Stoeckel Solenn (2017).
ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two-time steps .
Molecular Ecology Resources , 17(6), e251-e267 . Publisher's official version :
https://doi.org/10.1111/1755-0998.12698 , Open Access version :
https://archimer.ifremer.fr/doc/00390/50187/
Grehan Anthony J.,
Arnaud-Haond Sophie, D'Onghia Gianfranco, Savini Alessandra, Yesson Chris (2017).
Towards ecosystem based management and monitoring of the deep Mediterranean, North-East Atlantic and Beyond .
Deep-sea Research Part Ii-topical Studies In Oceanography , 145, 1-7 .
https://doi.org/10.1016/j.dsr2.2017.09.014
Davies J. S.,
Guillaumont Brigitte,
Tempera Fernando, Vertino A., Beuck L., Olafsdottir S. H., Smith C. J., Fossa J. H.,
Van Den Beld Inge, Savini A., Rengstorf A., Bayle Christophe,
Bourillet Jean-Francois,
Arnaud-Haond Sophie, Grehan A. (2017).
A new classification scheme of European cold-water coral habitats: implications for ecosystem-based management of the deep sea .
Deep-sea Research Part Ii-topical Studies In Oceanography , 145, 102-109 . Publisher's official version :
https://doi.org/10.1016/j.dsr2.2017.04.014 , Open Access version :
https://archimer.ifremer.fr/doc/00383/49474/
Rabouille C.,
Olu Karine, Baudin F.,
Khripounoff Alexis,
Dennielou Bernard,
Arnaud-Haond Sophie, Babonneau Nathalie, Bayle Christophe, Beckler J., Bessette Sandrine, Bombled B., Bourgeois S.,
Brandily Christophe,
Caprais Jean-Claude,
Cathalot Cecile, Charlier K., Corvaisier R., Croguennec Chantal, Cruaud Perrine, Decker Carole, Droz L.,
Gayet Nicolas,
Godfroy Anne, Hourdez S., Le Bruchec J., Saout Johan, Le Saout Marie-Helene,
Lesongeur Francoise, Martinez P., Mejanelle L., Michalopoulos P.,
Mouchel Olivier,
Noel Philippe,
Pastor Lucie, Picot M.,
Pignet Patricia, Pozzato L., Pruski A. M.,
Rabiller Manuella, Raimonet M., Ragueneau O., Reyss J. L.,
Rodier Philippe, Ruesch Blandine,
Ruffine Livio, Savignac F., Senyarich C., Schnyder J., Sen Arunima, Stetten E., Sun Ming Yi, Taillefert M., Teixeira S., Tisnerat-Laborde N.,
Toffin Laurent,
Tourolle Julie, Toussaint F., Vetion G., Jouanneau J. M., Bez M. (2017).
The Congolobe project, a multidisciplinary study of Congo deep-sea fan lobe complex: Overview of methods, strategies, observations and sampling .
Deep-sea Research Part Ii-topical Studies In Oceanography , 142, 7-24 . Publisher's official version :
https://doi.org/10.1016/j.dsr2.2016.05.006 , Open Access version :
https://archimer.ifremer.fr/doc/00335/44580/
Arnaud-Haond Sophie, Aires Tania, Candeias R., Teixeira S. J. L., Duarte C. M., Valero M., Serrao E. A. (2017).
Entangled fates of holobiont genomes during invasion: nested bacterial and host diversities in Caulerpa taxifolia .
Molecular Ecology , 26(8), 2379-2391 . Publisher's official version :
https://doi.org/10.1111/mec.14030 , Open Access version :
https://archimer.ifremer.fr/doc/00369/48058/
Arnaud-Haond Sophie,
Pradillon Florence (2017).
« Pourquoi pas les abysses ? » Le projet de recherche de l’Ifremer pour mieux connaître la biodiversité des fonds marins .
Annales des Mines - Responsabilité et environnement , (1), 40-42 .
Van Den Beld Inge,
Bourillet Jean-Francois,
Arnaud-Haond Sophie, De Chambure Laurent, Davies Jaime S,
Guillaumont Brigitte,
Olu Karine,
Menot Lenaick (2017).
Cold-water coral habitats in submarine canyons of the Bay of Biscay .
Frontiers In Marine Science , 4(118), 1-30 . Publisher's official version :
https://doi.org/10.3389/fmars.2017.00118 , Open Access version :
https://archimer.ifremer.fr/doc/00382/49343/
2016
Bailleul Diane, Stoeckel Solenn,
Arnaud-Haond Sophie (2016).
RClone: a package to identify MultiLocus Clonal Lineages and handle clonal datasets in R .
Methods In Ecology And Evolution , 7(8), 966-970 .
https://doi.org/10.1111/2041-210X.12550
Meistertzheim Anne. -Leila, Lartaud Franck,
Arnaud-Haond Sophie, Kalenitchenko Dimitri, Bessalam Manon, Le Bris Nadine, Galand Pierre E. (2016).
Patterns of bacteria-host associations suggest different ecological strategies between two reef building cold-water coral species .
Deep-sea Research Part I-oceanographic Research Papers , 114, 12-22 . Publisher's official version :
https://doi.org/10.1016/j.dsr.2016.04.013 , Open Access version :
https://archimer.ifremer.fr/doc/00332/44362/
Dubois Melodie, Rossi Vincent, Ser-Giacomi Enrico,
Arnaud-Haond Sophie, Lopez Cristobal, Hernandez-Garcia Emilio (2016).
Linking basin-scale connectivity, oceanography and population dynamics for the conservation and management of marine ecosystems .
Global Ecology And Biogeography , 25(5), 503-515 . Publisher's official version :
https://doi.org/10.1111/geb.12431 , Open Access version :
https://archimer.ifremer.fr/doc/00311/42201/
Ranjbar Mohammad Sharif, Zolgharnien Hossein, Yavari Vahid, Archangi Bita, Salari Mohammad Ali,
Arnaud-Haond Sophie, Cunha Regina L. (2016).
Rising the Persian Gulf Black-Lip Pearl Oyster to the Species Level: Fragmented Habitat and Chaotic Genetic Patchiness in Pinctada persica .
Evolutionary Biology , 43(1), 131-143 . Publisher's official version :
https://doi.org/10.1007/s11692-015-9356-1 , Open Access version :
https://archimer.ifremer.fr/doc/00319/43040/
Boavida Joana, Paulo Diogo, Aurelle Didier,
Arnaud-Haond Sophie, Marschal Christian, Reed John, Goncalves Jorge M. S., Serrao Ester A. (2016).
A Well-Kept Treasure at Depth: Precious Red Coral Rediscovered in Atlantic Deep Coral Gardens (SW Portugal) after 300 Years .
Plos One , 11(1), e0147228 . Publisher's official version :
https://doi.org/10.1371/journal.pone.0147228 , Open Access version :
https://archimer.ifremer.fr/doc/00314/42498/
Lee Van Dover Cindy, Arnaud-Haond Sophie, Clark Malcolm R., Smith Samantha, Thaler Andrew D., Van Den Hove Sybille (2016). Application of Biological Studies to Governance and Management of the Deep Sea . In Biological Sampling in the Deep Sea. 2016. Malcolm R. Clark Mireille Consalvey Ashley A. Rowden (Eds). Print ISBN:9780470656747, Online ISBN:9781118332535, DOI:10.1002/9781118332535. Chap.18, pp.404-430 (Wiley) .
2015
Durand Lucile, Roumagnac Marie,
Cueff-Gauchard Valerie, Jan Cyrielle, Guri Mathieu, Tessier Claire, Haond Marine, Crassous Philippe, Zbinden Magali,
Arnaud-Haond Sophie,
Cambon-Bonavita Marie-Anne (2015).
Biogeographical distribution of Rimicaris exoculata resident gut epibiont communities along the Mid-Atlantic Ridge hydrothermal vent sites .
Fems Microbiology Ecology , 91(10), 1-15 . Publisher's official version :
https://doi.org/10.1093/femsec/fiv101 , Open Access version :
https://archimer.ifremer.fr/doc/00288/39890/
Gagnaire Pierre-Alexandre, Broquet Thomas, Aurelle Didier, Viard Frederique, Souissi Ahmed, Bonhomme Francois,
Arnaud-Haond Sophie, Bierne Nicolas (2015).
Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era .
Evolutionary Applications , 8(8), 769-786 . Publisher's official version :
https://doi.org/10.1111/eva.12288 , Open Access version :
https://archimer.ifremer.fr/doc/00275/38592/
Pante Eric, Puillandre Nicolas, Viricel Amélia,
Arnaud-Haond Sophie, Aurelle Didier, Castelin Magalie, Chenuil Anne, Destombe Christophe, Forcioli Didier, Valero Myriam, Viard Frederique, Samadi Sarah (2015).
Species are hypotheses: avoid connectivity assessments based on pillars of sand .
Molecular Ecology , 24(3), 525-544 . Publisher's official version :
https://doi.org/10.1111/mec.13048 , Open Access version :
https://archimer.ifremer.fr/doc/00248/35952/
2014
Broggiato Arianna,
Arnaud-Haond Sophie, Chiarolla Claudio, Greiber Thomas (2014).
Fair and equitable sharing of benefits from the utilization of marine genetic resources in areas beyond national jurisdiction: Bridging the gaps between science and policy .
Marine Policy , 49, 176-185 .
https://doi.org/10.1016/j.marpol.2014.02.012
Lagabrielle Erwann, Crochelet Estelle, Andrello Marco, Schill Steven R.,
Arnaud-Haond Sophie, Alloncle Neil, Ponge Benjamin (2014).
Connecting MPAs - eight challenges for science and management .
Aquatic Conservation-marine And Freshwater Ecosystems , 24, 94-110 . Publisher's official version :
https://doi.org/10.1002/aqc.2500 , Open Access version :
https://archimer.ifremer.fr/doc/00226/33742/
Arnaud-Haond Sophie, Moalic Yann, Barnabe Christian, Ayala Francisco Jose, Tibayrenc Michel (2014).
Discriminating Micropathogen Lineages and Their Reticulate Evolution through Graph Theory-Based Network Analysis: The Case of Trypanosoma cruzi, the Agent of Chagas Disease .
Plos One , 9(8), - . Publisher's official version :
https://doi.org/10.1371/journal.pone.0103213 , Open Access version :
https://archimer.ifremer.fr/doc/00212/32374/
Arnaud-Haond Sophie, Moalic Yann, Hernandez-Garcia Emilio, Eguiluz Victor M., Alberto Filipe, Serrao Ester A., Duarte Carlos M. (2014).
Disentangling the Influence of Mutation and Migration in Clonal Seagrasses Using the Genetic Diversity Spectrum for Microsatellites .
Journal Of Heredity , 105(4), 532-541 . Publisher's official version :
https://doi.org/10.1093/jhered/esu015 , Open Access version :
https://archimer.ifremer.fr/doc/00182/29292/
Adjeroud Mehdi, Guerecheau Aurelie, Vidal-Dupiol Jeremie, Flot Jean-Francois,
Arnaud-Haond Sophie, Bonhomme Francois (2014).
Genetic diversity, clonality and connectivity in the scleractinian coral Pocillopora damicornis: a multi-scale analysis in an insular, fragmented reef system .
Marine Biology , 161(3), 531-541 . Publisher's official version :
https://doi.org/10.1007/s00227-013-2355-9 , Open Access version :
https://archimer.ifremer.fr/doc/00171/28209/
Van Dover C. L., Aronson J., Pendleton L., Smith S.,
Arnaud-Haond Sophie, Moreno-Mateos D., Barbier E., Billett D., Bowers K., Danovaro R., Edwards A., Kellert S., Morato T., Pollard E., Rogers A., Warner R. (2014).
Ecological Restoration in the Deep Sea: Desiderata .
Marine Policy , 44, 98-106 . Publisher's official version :
https://doi.org/10.1016/j.marpol.2013.07.006 , Open Access version :
https://archimer.ifremer.fr/doc/00153/26421/
2013
Gerard K., Guilloton E.,
Arnaud-Haond Sophie, Aurelle D., Bastrop R., Chevaldonne P., Derycke S., Hanel R.,
Lapegue Sylvie, Lejeusne C., Mousset Sylvain, Ramsak A., Remerie T., Viard Frederique, Feral Jean-Pierre, Chenuil A. (2013).
PCR survey of 50 introns in animals: Cross-amplification of homologous EPIC loci in eight non-bilaterian, protostome and deuterostome phyla .
Marine Genomics , 12, 1-8 . Publisher's official version :
https://doi.org/10.1016/j.margen.2013.10.001 , Open Access version :
https://archimer.ifremer.fr/doc/00166/27775/
Massa Sonia I., Paulino Cristina M., Serrao Ester A., Duarte Carlos M.,
Arnaud-Haond Sophie (2013).
Entangled effects of allelic and clonal (genotypic) richness in the resistance and resilience of experimental populations of the seagrass Zostera noltii to diatom invasion .
Bmc Ecology , 13(39), 1-12 . Publisher's official version :
https://doi.org/10.1186/1472-6785-13-39 , Open Access version :
https://archimer.ifremer.fr/doc/00166/27748/
Teixeira Sara,
Olu Karine, Decker Carole, Cunha Regina L.,
Fuchs Sandra, Hourdez Stephane, Serrao Ester A.,
Arnaud-Haond Sophie (2013).
High connectivity across the fragmented chemosynthetic ecosystems of the deep Atlantic Equatorial Belt: efficient dispersal mechanisms or questionable endemism? Molecular Ecology , 22(18), 4663-4680 . Publisher's official version :
https://doi.org/10.1111/mec.12419 , Open Access version :
https://archimer.ifremer.fr/doc/00157/26789/
Cowart Dominique, Huang Chunya,
Arnaud-Haond Sophie, Carney Susan L., Fisher Charles R., Schaeffer Stephen W. (2013).
Restriction to large-scale gene flow vs. regional panmixia among cold seep Escarpia spp. (Polychaeta, Siboglinidae) .
Molecular Ecology , 22(16), 4147-4162 . Publisher's official version :
https://doi.org/10.1111/mec.12379 , Open Access version :
https://archimer.ifremer.fr/doc/00152/26354/
2012
Masucci A. Paolo,
Arnaud-Haond Sophie, Eguiluz Victor M., Hernandez-Garcia Emilio, Serrao Ester A. (2012).
Genetic flow directionality and geographical segregation in a Cymodocea nodosa genetic diversity network .
Epj Data Science , 1(1), 1-11 . Publisher's official version :
https://doi.org/10.1140/epjds11 , Open Access version :
https://archimer.ifremer.fr/doc/00127/23872/
Teixeira Sara, Serrao Ester A.,
Arnaud-Haond Sophie (2012).
Characterization of 15 polymorphic microsatellite loci in Rimicaris exoculata, and cross-amplification in other hydrothermal-vent shrimp .
Conservation Genetics Resources , 4(1), 81-84 .
https://doi.org/10.1007/s12686-011-9479-3
2011
Chenault Nicolas,
Arnaud-Haond Sophie, Juteau Mary, Valade Romain, Almeida Jose-Luis, Villar Marc, Bastien Catherine, Dowkiw Arnaud (2011).
SSR-based analysis of clonality, spatial genetic structure and introgression from the Lombardy poplar into a natural population of Populus nigra L. along the Loire River .
Tree Genetics & Genomes , 7(6), 1249-1262 . Publisher's official version :
https://doi.org/10.1007/s11295-011-0410-6 , Open Access version :
https://archimer.ifremer.fr/doc/00065/17617/
Massa Sonia I., Pearson Gareth A., Aires Tania, Kube Michael, Olsen Jeanine L., Reinhardt Richard, Serrao Ester A.,
Arnaud-Haond Sophie (2011).
Expressed sequence tags from heat-shocked seagrass Zostera noltii (Hornemann) from its southern distribution range .
Marine Genomics , 4(3), 181-188 . Publisher's official version :
https://doi.org/10.1016/j.margen.2011.04.003 , Open Access version :
https://archimer.ifremer.fr/doc/00044/15559/
Moalic Yann,
Arnaud-Haond Sophie, Perrin Cecile, Pearson Gareth A., Serrao Ester A. (2011).
Travelling in time with networks: Revealing present day hybridization versus ancestral polymorphism between two species of brown algae, Fucus vesiculosus and F. spiralis .
Bmc Evolutionary Biology , 11, 1-13 . Publisher's official version :
https://doi.org/10.1186/1471-2148-11-33 , Open Access version :
https://archimer.ifremer.fr/doc/00035/14600/
Aires Tania, Marba Nuria, Cunha Regina L., Kendrick Gary A., Walker Diana I., Serrao Ester A., Duarte Carlos M.,
Arnaud-Haond Sophie (2011).
Evolutionary history of the seagrass genus Posidonia .
Marine Ecology-progress Series , 421, 117-130 . Publisher's official version :
https://doi.org/10.3354/meps08879 , Open Access version :
https://archimer.ifremer.fr/doc/00027/13798/
2010
Serra I. A., Innocenti A. M., Di Maida G., Calvo S., Migliaccio M., Zambianchi E., Pizzigalli C.,
Arnaud-Haond Sophie, Duarte C. M., Serrao E. A., Procaccini G. (2010).
Genetic structure in the Mediterranean seagrass Posidonia oceanica: disentangling past vicariance events from contemporary patterns of gene flow .
Molecular Ecology , 19(3), 557-568 .
https://doi.org/10.1111/j.1365-294X.2009.04462.x
2009
Arnaud-Haond Sophie, Duarte Carlos M., Teixeira Sara, Massa Sonia Isabel, Terrados Jorge, Nguyen Hong Tri, Phan Nguyen Hong, Serrao Ester A. (2009).
Genetic recolonization of mangrove: genetic diversity still increasing in the Mekong Delta 30 years after Agent Orange .
Marine Ecology Progress Series , 390, 129-135 . Publisher's official version :
https://doi.org/10.3354/meps08183 , Open Access version :
https://archimer.ifremer.fr/doc/00000/6898/
Massa S. I.,
Arnaud-Haond Sophie, Pearson G. A., Serrao E. A. (2009).
Temperature tolerance and survival of intertidal populations of the seagrass Zostera noltii (Hornemann) in Southern Europe (Ria Formosa, Portugal) .
Hydrobiologia , 619, 195-201 .
https://doi.org/10.1007/s10750-008-9609-4
2008
Rozenfeld Alejandro F.,
Arnaud-Haond Sophie, Hernandez-Garcia Emilio, Eguiluz Victor M., Serrao Ester A., Duarte Carlos M. (2008).
Network analysis identifies weak and strong links in a metapopulation system .
Proceedings Of The National Academy Of Sciences Of The United States Of America , 105(48), 18824-18829 .
https://doi.org/10.1073/pnas.0805571105
Alberto Filipe, Massa Sonia, Manent Pablo, Diaz-Almela Elena,
Arnaud-Haond Sophie, Duarte Carlos M., Serrao Ester A. (2008).
Genetic differentiation and secondary contact zone in the seagrass Cymodocea nodosa across the Mediterranean-Atlantic transition region .
Journal Of Biogeography , 35(7), 1279-1294 .
https://doi.org/10.1111/j.1365-2699.2007.01876.x
2007
Diaz-Almela Elena,
Arnaud-Haond Sophie, Vliet Mirjam S., Alvarez Elvira, Marba Nuria, Duarte Carlos M., Serrao Ester A. (2007).
Feed-backs between genetic structure and perturbation-driven decline in seagrass (Posidonia oceanica) meadows .
Conservation Genetics , 8(6), 1377-1391 .
https://doi.org/10.1007/s10592-007-9288-0
Rozenfeld Alejandro F.,
Arnaud-Haond Sophie, Hernandez-Garcia Emilio, Eguiluz Victor M., Matias Manuel A., Serrao Ester, Duarte Carlos M. (2007).
Spectrum of genetic diversity and networks of clonal organisms .
Journal Of The Royal Society Interface , 4(17), 1093-1102 .
https://doi.org/10.1098/rsif.2007.0230
Arnaud-Haond Sophie, Migliaccio Marianna, Diaz-Almela Elena, Teixeira Sara, Van De Vliet Mirjiam Susanne, Alberto Filipe, Procaccini Gabriele, Duarte Carlos M., Serrao Ester A. (2007).
Vicariance patterns in the Mediterranean Sea: east-west cleavage and low dispersal in the endemic seagrass Posidonia oceanica .
Journal Of Biogeography , 34(6), 963-976 .
https://doi.org/10.1111/j.1365-2699.2006.01671.x
Arnaud-Haond Sophie (2007). Dispersion, modes reproducteurs et réseaux en environnement marin : là où il y a des gènes (Habilitation à Diriger des Recherches) . HDR.
Arnaud-Haond Sophie, Belkhir Khalid (2007).
GENCLONE: a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization .
Molecular Ecology Notes , 7(1), 15-17 .
https://doi.org/10.1111/j.1471-8286.2006.01522.x
2006
Hernandez-Garcia E., Rozenfeld A. F., Eguiluz V. M.,
Arnaud-Haond Sophie, Duarte C. M. (2006).
Clone size distributions in networks of genetic similarity .
Physica D-nonlinear Phenomena , 224(1-2), 166-173 .
https://doi.org/10.1016/j.physd.2006.09.015
Arnaud-Haond Sophie, Teixeira Sara, Massa S. I., Billot C., Saenger P., Coupland G., Duarte C. M., Serrao E. A. (2006).
Genetic structure at range edge: low diversity and high inbreeding in Southeast Asian mangrove (Avicennia marina) populations .
Molecular Ecology , 15(12), 3515-3525 .
https://doi.org/10.1111/j.1365-294X.2006.02997.x
Alberto F,
Arnaud-Haond Sophie, Duarte Cm, Serrao Ea (2006).
Genetic diversity of a clonal angiosperm near its range limit: the case of Cymodocea nodosa at the Canary Islands .
Marine Ecology-progress Series , 309, 117-129 .
https://doi.org/10.3354/meps309117
2005
Alberto F, Gouveia L,
Arnaud-Haond Sophie, Perez-Llorens Jl, Duarte Cm, Serrao Ea (2005).
Within-population spatial genetic structure, neighbourhood size and clonal subrange in the seagrass Cymodocea nodosa .
Molecular Ecology , 14(9), 2669-2681 .
https://doi.org/10.1111/j.1365-294X.2005.02640.x
Arnaud-Haond Sophie, Alberto F, Teixeira Sara, Procaccini G, Serrao Ea, Duarte Cm (2005).
Assessing genetic diversity in clonal organisms: Low diversity or low resolution? Combining power and cost efficiency in selecting markers .
Journal Of Heredity , 96(4), 434-440 .
https://doi.org/10.1093/jhered/esi043
Arnaud-Haond Sophie, Blanc Frederique, Bonhomme E, Monteforte M (2005).
Recent foundation of Mexican populations of pearl oysters (Pteria sterna) revealed by lack of genetic variation on two mitochondrial genes .
Journal Of The Marine Biological Association Of The United Kingdom , 85(2), 363-366 .
https://doi.org/10.1017/S0025315405011288h
Arnaud-Haond Sophie, Goyard Emmanuel,
Prou Jean,
Vonau Vincent, Bonhomme Francois,
Boudry Pierre (2005).
Gestion des ressources génétiques de l'huître perlière Pinctada margaritifera de Polynésie française : caractérisation génétique des populations et optimisation du recrutement pour l'exploitation perlière .
Les Actes du BRG , 5, 215-229 . Open Access version :
https://archimer.ifremer.fr/doc/00000/3822/
2004
2003
Goyard Emmanuel,
Arnaud-Haond Sophie,
Vonau Vincent, Bishoff Vincent,
Mouchel Olivier,
Pham Dominique, Wyban Jim,
Boudry Pierre (2003).
Residual genetic variability in domesticated populations of the Pacific blue shrimp (Litopenaeus stylirostris) of New Caledonia, French Polynesia and Hawaii and some management recommendations .
Aquatic Living Resources , 16(6), 501-508 . Publisher's official version :
https://doi.org/10.1016/j.aquliv.2003.07.001 , Open Access version :
https://archimer.ifremer.fr/doc/00000/596/
Arnaud-Haond Sophie, Monteforte M, Blanc F, Bonhomme Francois (2003).
Evidence for male-biased effective sex ratio and recent step-by-step colonization in the bivalve Pinctada mazatlanica .
Journal Of Evolutionary Biology , 16(5), 790-796 .
https://doi.org/10.1046/j.1420-9101.2003.00603.x
Alberto F, Correia L,
Arnaud-Haond Sophie, Billot C, Duarte Cm, Serrao E (2003).
New microsatellite markers for the endemic Mediterranean seagrass Posidonia oceanica .
Molecular Ecology Notes , 3(2), 253-255 .
https://doi.org/10.1046/j.1471-8286.2003.00415.x
Arnaud-Haond Sophie, Bonhomme Francois, Blanc Frederique (2003).
Large discrepancies in differentiation of allozymes, nuclear and mitochondrial DNA loci in recently founded Pacific populations of the pearl oyster Pinctada margaritifera .
Journal Of Evolutionary Biology , 16(3), 388-398 .
https://doi.org/10.1046/j.1420-9101.2003.00549.x
Arnaud-Haond Sophie,
Vonau Vincent, Bonhomme François,
Boudry Pierre,
Prou Jean, Seaman Terii, Veyret Melanie, Goyard Emmanuel (2003).
Spat collection of the pearl oyster (Pinctada margaritifera cumingii) in French Polynesia: an evaluation of the potential impact on genetic variability of wild and farmed populations after 20 years of commercial exploitation .
Aquaculture , 219(1-4), 181-192 .
https://doi.org/10.1016/S0044-8486(02)00568-9
Arnaud Sophie,
Prou Jean,
Boudry Pierre,
Vonau Vincent, Goyard Emmanuel (2003).
Ressources génétiques de l'huître perlière de Polynésie Française, Pinctada margaritifera. Recherche de populations locales origninales et aide à la définition d'une stratégie de conservation . Rapport final. Contrat de développement Etat-Territoire 2000-2003 .
2002
Arnaud-Haond Sophie,
Boudry Pierre,
Saulnier Denis, Seaman T, Bonhomme F, Goyard Emmanuel (2002).
New anonymous nuclear DNA markers for the pearl oyster Pinctada margaritifera and other Pinctada species .
Molecular Ecology Notes , 2(3), 220-222 .
2000
Arnaud Sophie, Monteforte Mario, Galtier Nicolas, Bonhomme François, Blanc Françoise (2000). Population structure and genetic variability of pearl oyster Pinctada mazatlanica along Pacific coasts from Mexico to Panama . Conservation Genetics , 1, 299-307 .
1999
Arnaud Sophie, Bonhomme Francois, Borsa P (1999).
Mitochondrial DNA analysis of the genetic relationships among populations of scad mackerel (Decapterus macarellus, D-macrosoma, and D-russelli) in South-East Asia .
Marine Biology , 135(4), 699-707 .
https://doi.org/10.1007/s002270050671