Desdouits Marion, Wacrenier Candice, Ollivier Joanna, Schaeffer Julien, Le Guyader Soizick (2020). Raw deep-sequencing data of targeted metagenomics to study the diversity of norovirus GII in shellfish. IFREMER. https://doi.org/10.12770/6e0c6687-22fe-47e0-bc67-81dde633d25b

Ollivier Joanna, James Lowther, Desdouits Marion, Schaeffer Julien, Candice Wacrenier, Bas B. Oude Munnink, Alban Besnard, Frederico Mota Batista, Pascal Garry, Tina Stapleton, Anna Charlotte Schultz, Frank Aarestrup, Marion Koopmans, Miranda de Graaf, Le Guyader Soizick (2020). Application of Next Generation Sequencing on Norovirus-contaminated oyster samples. IFREMER. https://doi.org//10.12770/d26e15ea-a389-402b-b421-48e5d73a2776

Le Guyader Soizick, Ollivier Joanna, Parnaudeau Sylvain, Gauffriau Mathias, Papin Mathias, Stavrakakis Christophe, François Virginie, Vincent Hubert Francoise, Garry Pascal . Comparing Two Seawater Temperatures For Human Norovirus Depuration From Oysters . Journal of Food Protection IN PRESS . Publisher's official version : https://doi.org/10.1016/j.jfp.2024.100406 , Open Access version : https://archimer.ifremer.fr/doc/00919/103130/

Boxman Ingeborg L.A., Molin Ramia, Persson Sofia, Juréus Anna, Jansen Claudia C.C., Sosef Nils P., Le Guyader Soizick, Ollivier Joanna, Summa Maija, Hautaniemi Maria, Suffredini Elisabetta, Di Pasquale Simona, Myrmel Mette, Khatri Mamata, Jamnikar-Ciglenecki Urska, Kusar Darja, Moor Dominik, Butticaz Lisa, Lowther James A., Walker David I., Stapleton Tina, Simonsson Magnus, Dirks René A.M. (2024). An international inter-laboratory study to compare digital PCR with ISO standardized qPCR assays for the detection of norovirus GI and GII in oyster tissue . Food Microbiology , 120, 104478 (12p.) . https://doi.org/10.1016/j.fm.2024.104478

Garry Pascal, Le Guyader Soizick (2024). Rapport d’activités 2023. Laboratoire Santé, Environnement et Microbiologie, Laboratoire National de Référence de Microbiologie des coquillages . https://archimer.ifremer.fr/doc/00900/101169/

Troja Fulvia, Schaeffer Julien, Desdouits Marion, Indio Valentina, de Cesare Alessandra, Le Guyader Soizick (2024). Use of shotgun metagenomic for the analysis of shellfish virome: Comparative assessment of the performances of three capture enrichment kits . FSM 2024 - Food System Microbiomes. 14-17 May 2024, Torino, Italy .

Monnot M., Ollivier Joanna, Taligrot H., Garry Pascal, Cordier Clémence, Stavrakakis Christophe, Le Guyader Soizick, Moulin Philippe (2024). Retention of Virus Versus Surrogate, by Ultrafiltration in Seawater: Case Study of Norovirus Versus Tulane . Food And Environmental Virology , 16(1), 14-24 . Publisher's official version : https://doi.org/10.1007/s12560-023-09574-z , Open Access version : https://archimer.ifremer.fr/doc/00869/98136/

Gourmelon Michele (2023). Microbiomes dans les écosystèmes estuariens en France : ROME, le réseau d’ADN/ARN environnemental . Journées du réseau O-ADN environnemental. 29-30 Novembre 2023, Cestas .

Siano Raffaele, Arzul Isabelle, Gourmelon Michele, Le Guyader Soizick, Durand Patrick, Serghine Joelle, Parnaudeau Sylvain, Quere Julien, Schmitt Sophie, Francoise Sylvaine, Mary Charlotte, Hernandez Farinas Tania, Terre Terrillon Aouregan, Lebrun Luc, Chomerat Nicolas, Seugnet Jean-Luc, Pepin Jean-Francois, Felix Christine, Serais Ophelie, Gobet Angélique, Chevalier Mathieu, Chevignon Germain, Lecadet Cyrielle, Morga Benjamin, Piquet Jean-Come, Lemoine Maud, Leroi Laura, Noel Cyril (2023). Coastal microbiomes in riverine ecosystems of the French coastline: the ROME project . ISEEMPD 2022 - International Symposium on Ecology and Evolution of Marine Parasites and Diseases. 15-18 November 2022 .

Gourmelon Michele (2023). Microbiomes côtiers dans les écosystèmes estuariens en France : le réseau d’ADN/ARN environnemental. ROME . MICROBES 2023 - 18e Congrès National de la SFM ( Société Française de Microbiologie) « Un monde à explorer » . 4-6 octobre 2023, Rennes .

Siano Raffaele, Arzul Isabelle, Gourmelon Michele, Le Guyader Soizick, Durand Patrick, The Rome Consortium (2023). Coastal microbiomes in estuarine ecosystems of France: the eDNA network ROME . ASC 2023 - ICES Annual Science Conference 2023. 11–14 September 2023 Bilbao, Spain .

Desdouits Marion, Reynaud Yann, Philippe Cecile, Le Guyader Soizick (2023). A Comprehensive Review for the Surveillance of Human Pathogenic Microorganisms in Shellfish . Microorganisms , 11(9), 2218 (24p.) . Publisher's official version : https://doi.org/10.3390/microorganisms11092218 , Open Access version : https://archimer.ifremer.fr/doc/00851/96297/

Contrant Maud, Bigault Lionel, Andraud Mathieu, Desdouits Marion, Rocq Sophie, Le Guyader Soizick, Blanchard Yannick (2023). Porcine Epidemic Diarrhea Virus, Surrogate for Coronavirus Decay Measurement in French Coastal Waters and Contribution to Coronavirus Risk Evaluation . Microbiology Spectrum , 11(4), 13p. Publisher's official version : https://doi.org/10.1128/spectrum.01844-23 , Open Access version : https://archimer.ifremer.fr/doc/00845/95719/

Siano Raffaele, Arzul Isabelle, Gourmelon Michele, Le Guyader Soizick, Durand Patrick, Serghine Joelle, Parnaudeau Sylvain, Quere Julien, Schmitt Sophie, Francoise Sylvaine, Mary Charlotte, Hernandez Farinas Tania, Terre Terrillon Aouregan, Lebrun Luc, Chomerat Nicolas, Seugnet Jean-Luc, Pepin Jean-Francois, Felix Christine, Serais Ophelie, Gobet Angélique, Chevalier Mathieu, Chevignon Germain, Lecadet Cyrielle, Morga Benjamin, Piquet Jean-Come, Lemoine Maud, Leroi Laura, Noel Cyril (2023). Coastal microbiomes in estuarine ecosystems of France: the eDNA network ROME . ASLO - Aquatic Sciences Meeting 2023 "Resilience and Recovery in Aquatic Systems". 4-9 June 2023, Palma de Mallorca, Spain.

Auger Audrey, Yu Shin-Yi, Guu Shih-Yun, Quéméner Agnès, Euller Gabriel, Ando Hiromune, Desdouits Marion, Le Guyader Soizick, Khoo Kay-Hooi, Le Pendu Jacques, Chirat Frédéric, Guerardel Yann (2023). Species-Specific N-Glycomes and Methylation Patterns of Oysters Crassostrea gigas and Ostrea edulis and Their Possible Consequences for the Norovirus–HBGA Interaction . Marine Drugs , 21(6), 342 (25p.) . Open Access version : https://archimer.ifremer.fr/doc/00840/95215/

Euller Gabriel, Le Mennec Cecile, Schaeffer Julien, Zeng Xi-Lei, Ettayebi Khalil, Atmar Robert L., Le Guyader Soizick, Estes Mary K., Desdouits Marion (2023). Human Sapovirus Replication in Human Intestinal Enteroids . Journal of Virology , 97(4), e00383-23 (14p.) . Publisher's official version : https://doi.org/10.1128/jvi.00383-23 , Open Access version : https://archimer.ifremer.fr/doc/00839/95134/

Contrant Maud, Bigault Lionel, Andraud Mathieu, Desdouits Marion, Rocq Sophie, Le Guyader Soizick, Blanchard Yannick . Evaluation of coronavirus decay in French coastal water and application to SARS-CoV-2 risk evaluation using Porcine Epidemic Diarrhea Virus as surrogate . medRxiv IN PRESS . Publisher's official version : https://doi.org/10.1101/2023.04.18.23288060 , Open Access version : https://archimer.ifremer.fr/doc/00879/99115/

Schaeffer Julien, Desdouits Marion, Besnard Alban, Le Guyader Soizick (2023). Looking into sewage: how far can metagenomics help to detect human enteric viruses? Frontiers In Microbiology , 14, 1161674 (17p.) . Publisher's official version : https://doi.org/10.3389/fmicb.2023.1161674 , Open Access version : https://archimer.ifremer.fr/doc/00834/94622/

Garry Pascal, Le Guyader Soizick (2023). Rapport d’activités 2022. Laboratoire Santé Environnement et Microbiologie, Laboratoire National de Référence Microbiologie des coquillages . RBE/MASAE/LSEM 23-01 . https://archimer.ifremer.fr/doc/00831/94264/

Maréchal Vincent, Boni Mickaël, Maday Yvon, Cluzel Nicolas, Gis Obepine (2023). Épidémiologie basée sur les eaux usées : actualité et futur d’une méthode épidémiologique alternative, pour détecter et suivre les épidémies . Enjeux numériques , (21), 145-155 . Open Access version : https://archimer.ifremer.fr/doc/00824/93571/

Boni M., Wurtzer S., Mouchel J. M., Maday Y., Le Guyader Soizick, Garry Pascal, Bertrand I., Cluzel N., Courbariaux M., Wang S., Gantzer C., Maréchal V., Moulin L. (2023). Implementation of a National Wastewater Surveillance System in France as a Tool to Support Public Authorities During the Covid Crisis: The Obepine Project . In Manish Kumar, Keisuke Kuroda, Santanu Mukherjee, Long D. Ngiehm, Meththika Vithanage, and Vinay Kumar Tyagi (eds.) 2023 Wastewater Surveillance for Covid-19 Management. Part of The Handbook of Environmental Chemistry. 2023. Damià Barceló, Andrey G. Kostianoy (Eds.). Springer, Berlin, Heidelberg. https://doi.org/10.1007/698_2023_994. 29p. (Springer Berlin Heidelberg) .

McLeod Catherine, Le Guyader Soizick (2023). Need to Know More About Foodborne Viruses? In Reference Module in Food Science. ISBN 978-0-08-100596-5. 11p. (Elsevier) .

Munk Patrick, Brinch Christian, Duus Møller Frederik, Petersen Thomas N., Hendriksen Rene S., Seyfarth Anne Mette, Kjeldgaard Jette S., Svendsen Christina Aaby, Van Bunnik Bram, Berglund Fanny, Bego Artan, Power Pablo, Rees Catherine, Lambrinidis Dionisia, Neilson Elizabeth Heather Jakobsen, Gibb Karen, Coventry Kris, Collignon Peter, Cassar Susan, Allerberger Franz, Begum Anowara, Hossain Zenat Zebin, Worrell Carlon, Vandenberg Olivier, Pieters Ilse, Victorien Dougnon Tamègnon, Gutierrez Angela Daniela Salazar, Soria Freddy, Grujić Vesna Rudić, Mazalica Nataša, Rahube Teddie O., Tagliati Carlos Alberto, Rodrigues Dalia, Oliveira Guilherme, de Souza Larissa Camila Ribeiro, Ivanov Ivan, Juste Bonkoungou Isidore, Oumar Traoré, Sopheak Thet, Vuthy Yith, Ngandijo Antoinette, Nzouankeu Ariane, Olivier Ziem A. Abah Jacques, Yost Christopher K., Kumar Pratik, Brar Satinder Kaur, Tabo Djim-Adjim, Adell Aiko D., Paredes-Osses Esteban, Martinez Maria Cristina, Cuadros-Orellana Sara, Ke Changwen, Zheng Huanying, Baisheng Li, Lau Lok Ting, Chung Teresa, Jiao Xiaoyang, Yu Yongjie, Jiayong Zhao, Morales Johan F. Bernal, Valencia Maria Fernanda, Donado-Godoy Pilar, Coulibaly Kalpy Julien, Hrenovic Jasna, Jergović Matijana, Karpíšková Renáta, Deogratias Zozo Nyarukweba, Elsborg Bodil, Hansen Lisbeth Truelstrup, Jensen Pernille Erland, Abouelnaga Mohamed, Salem Mohamed Fathy, Koolmeister Marliin, Legesse Mengistu, Eguale Tadesse, Heikinheimo Annamari, Le Guyader Soizick, Schaeffer Julien, Villacis Jose Eduardo, Sanneh Bakary, Malania Lile, Nitsche Andreas, Brinkmann Annika, Schubert Sara, Hesse Sina, Berendonk Thomas U., Saba Courage Kosi Setsoafia, Mohammed Jibril, Feglo Patrick Kwame, Banu Regina Ama, Kotzamanidis Charalampos, Lytras Efthymios, Lickes Sergio A., Kocsis Bela, Solymosi Norbert, Thorsteinsdottir Thorunn R., Hatha Abdulla Mohamed, Ballal Mamatha, Bangera Sohan Rodney, Fani Fereshteh, Alebouyeh Masoud, Morris Dearbhaile, O’connor Louise, Cormican Martin, Moran-Gilad Jacob, Battisti Antonio, Diaconu Elena Lavinia, Corno Gianluca, Di Cesare Andrea, Alba Patricia, Hisatsune Junzo, Yu Liansheng, Kuroda Makoto, Sugai Motoyuki, Kayama Shizuo, Shakenova Zeinegul, Kiiyukia Ciira, Ng’eno Eric, Raka Lul, Jamil Kazi, Fakhraldeen Saja Adel, Alaati Tareq, Bērziņš Aivars, Avsejenko Jeļena, Kokina Kristina, Streikisa Madara, Bartkevics Vadims, Matar Ghassan M., Daoud Ziad, Pereckienė Asta, Butrimaite-Ambrozeviciene Ceslova, Penny Christian, Bastaraud Alexandra, Rasolofoarison Tiavina, Collard Jean-Marc, Samison Luc Hervé, Andrianarivelo Mala Rakoto, Banda Daniel Lawadi, Amin Arshana, Rajandas Heraa, Parimannan Sivachandran, Spiteri David, Haber Malcolm Vella, Santchurn Sunita J., Vujacic Aleksandar, Djurovic Dijana, Bouchrif Brahim, Karraouan Bouchra, Vubil Delfino Carlos, Pal Pushkar, Schmitt Heike, Van Passel Mark, Jeunen Gert-Jan, Gemmell Neil, Chambers Stephen T., Mendoza Fania Perez, Huete-Pιrez Jorge, Vilchez Samuel, Ahmed Akeem Olayiwola, Adisa Ibrahim Raufu, Odetokun Ismail Ayoade, Fashae Kayode, Sørgaard Anne-Marie, Wester Astrid Louise, Ryrfors Pia, Holmstad Rune, Mohsin Mashkoor, Hasan Rumina, Shakoor Sadia, Gustafson Natalie Weiler, Schill Claudia Huber, Rojas Maria Luz Zamudio, Velasquez Jorge Echevarria, Magtibay Bonifacio B., Catangcatang Kris, Sibulo Ruby, Yauce Felipe Campos, Wasyl Dariusz, Manaia Celia, Rocha Jaqueline, Martins Jose, Álvaro Pedro, Di Yoong Wen Doris, Shin Hanseob, Hur Hor-Gil, Yoon Sukhwan, Bosevska Golubinka, Kochubovski Mihail, Cojocaru Radu, Burduniuc Olga, Hong Pei-Ying, Perry Meghan Rose, Gassama Amy, Radosavljevic Vladimir, Tay Moon Y. F., Zuniga-Montanez Rogelio, Wuertz Stefan, Gavačová Dagmar, Pastuchová Katarína, Truska Peter, Trkov Marija, Keddy Karen, Esterhuyse Kerneels, Song Min Joon, Quintela-Baluja Marcos, Lopez Mariano Gomez, Cerdà-Cuéllar Marta, Perera R. R. D. P., Bandara N. K. B. K. R. G. W., Premasiri H. I., Pathirage Sujatha, Charlemagne Kareem, Rutgersson Carolin, Norrgren Leif, Örn Stefan, Boss Renate, Van Der Heijden Tanja, Hong Yu-Ping, Kumburu Happiness Houka, Mdegela Robinson Hammerthon, Hounmanou Yaovi Mahuton Gildas, Chonsin Kaknokrat, Suthienkul Orasa, Thamlikitkul Visanu, de Roda Husman Ana Maria, Bidjada Bawimodom, Njanpop-Lafourcade Berthe-Marie, Nikiema-Pessinaba Somtinda Christelle, Levent Belkis, Kurekci Cemil, Ejobi Francis, Kalule John Bosco, Thomsen Jens, Obaidi Ouidiane, Jassim Laila Mohamed, Moore Andrew, Leonard Anne, Graham David W., Bunce Joshua T., Zhang Lihong, Gaze William H., Lefor Brett, Capone Drew, Sozzi Emanuele, Brown Joe, Meschke John Scott, Sobsey Mark D., Davis Michael, Beck Nicola Koren, Sukapanpatharam Pardi, Truong Phuong, Lilienthal Ronald, Kang Sanghoon, Wittum Thomas E., Rigamonti Natalia, Baklayan Patricia, Van Chinh Dang, Tran Doan Minh Nguyen, Do Phuc Nguyen, Kwenda Geoffrey, Larsson D. G. Joakim, Koopmans Marion, Woolhouse Mark, Aarestrup Frank M. (2022). Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance . Nature Communications , 13(1), 7251 (16p.) . Publisher's official version : https://doi.org/10.1038/s41467-022-34312-7 , Open Access version : https://archimer.ifremer.fr/doc/00808/91994/

Wurtzer Sebastien, Levert Morgane, Dhenain Eloise, Boni Mickael, Tournier Jean Nicolas, Londinsky Nicolas, Lefranc Agnès, Ferraris Olivier, Moulin Laurent, Obepine Sig (2022). First Detection of Monkeypox Virus Genome in Sewersheds in France: The Potential of Wastewater-Based Epidemiology for Monitoring Emerging Disease . Environmental Science & Technology Letters , 9(11), 991-996 . Publisher's official version : https://doi.org/10.1021/acs.estlett.2c00693 , Open Access version : https://archimer.ifremer.fr/doc/00803/91480/

Vincent-Hubert Francoise, Wacrenier Candice, Desdouits Marion, Jousse Sarah, Schaeffer Julien, Le Mehaute Phillipe, Nakache-Danglot Frederique, Le Guyader Soizick, Obepine Consortium (2022). Development of passive samplers for the detection of SARS-CoV-2 in sewage and seawater: Application for the monitoring of sewage . Science Of The Total Environment , 833, 155139 (8p.) . Publisher's official version : https://doi.org/10.1016/j.scitotenv.2022.155139 , Open Access version : https://archimer.ifremer.fr/doc/00765/87737/

Desdouits Marion, Polo Montero David, Le Mennec Cecile, Strubbia Sofia, Zeng Xi-Lei, Ettayebi Khalil, Atmar Robert L., Estes Mary K., Le Guyader Soizick (2022). Use of Human Intestinal Enteroids to Evaluate Persistence of Infectious Human Norovirus in Seawater . Emerging Infectious Diseases , 28(7), 1475-1479 . Publisher's official version : https://doi.org/10.3201/eid2807.220219 , Open Access version : https://archimer.ifremer.fr/doc/00786/89824/

Barbe Laure, Schaeffer Julien, Besnard Alban, Jousse Sarah, Wurtzer Sébastien, Moulin Laurent, Le Guyader Soizick, Desdouits Marion (2022). SARS-CoV-2 Whole-Genome Sequencing Using Oxford Nanopore Technology for Variant Monitoring in Wastewaters . Frontiers In Microbiology , 13, 889811 (14p.) . Publisher's official version : https://doi.org/10.3389/fmicb.2022.889811 , Open Access version : https://archimer.ifremer.fr/doc/00775/88715/

Ollivier Joanna, Lowther James, Desdouits Marion, Schaeffer Julien, Wacrenier Candice, Oude Munnink Bas B., Besnard Alban, Mota Batista Frederico, Stapleton Tina, Schultz Anna Charlotte, Aarestrup Frank, Koopmans Marion, de Graaf Miranda, Le Guyader Soizick (2022). Application of Next Generation Sequencing on Norovirus‐contaminated oyster samples . EFSA Supporting Publications , 19(6), EN-7348E (144p.) . Publisher's official version : https://doi.org/10.2903/sp.efsa.2022.EN-7348 , Open Access version : https://archimer.ifremer.fr/doc/00776/88826/

Taligrot H., Monnot M., Ollivier Joanna, Cordier C., Jacquet N., Vallade Emilie, Garry Pascal, Stavrakakis Christophe, Le Guyader Soizick, Moulin P. (2022). Retention of the Tulane virus, a norovirus surrogate, by ultrafiltration in seawater and production systems . Aquaculture , 553, 738096 (9p.) . Publisher's official version : https://doi.org/10.1016/j.aquaculture.2022.738096 , Open Access version : https://archimer.ifremer.fr/doc/00754/86560/

Wurtzer S., Waldman P., Levert M., Cluzel N., Almayrac J.L., Charpentier C., Masnada F., Gillon-Ritz M., Mouchel J.M., Maday Y., Boni M., Obepine Consortium , Ap-Hp Virologist Group , Marechal V, Moulin L (2022). SARS-CoV-2 genome quantification in wastewaters at regional and city scale allows precise monitoring of the whole outbreaks dynamics and variants spreading in the population . Science Of The Total Environment , 810, 152213 (11p.) . Publisher's official version : https://doi.org/10.1016/j.scitotenv.2021.152213 , Open Access version : https://archimer.ifremer.fr/doc/00740/85166/

Garry Pascal, Le Guyader Soizick (2022). Rapport d'activités 2021. Laboratoire Santé Environnement et Microbiologie. Laboratoire National de Référence Microbiologie des coquillages . RBE/MASAE/LSEM 22-01 . https://archimer.ifremer.fr/doc/00760/87250/

Cluzel Nicolas, Courbariaux Marie, Wang Siyun, Moulin Laurent, Wurtzer Sébastien, Bertrand Isabelle, Laurent Karine, Monfort Patrick, Gantzer Christophe, Le Guyader Soizick, Boni Mickaël, Mouchel Jean-Marie, Maréchal Vincent, Nuel Grégory, Maday Yvon, Obépine Consortium (2022). A nationwide indicator to smooth and normalize heterogeneous SARS-CoV2 RNA data in wastewater . Environment International , 158, 106998 (21p.) . Publisher's official version : https://doi.org/10.1016/j.envint.2021.106998 , Open Access version : https://archimer.ifremer.fr/doc/00736/84787/

Jacquet Qtéphan (coord.), Baudoux Anne-Claire, Desdevises Yves, Le Guyader Soizick (2022). Les virus marins. Simples parasites ou acteurs majeurs des écosystèmes aquatiques ? Editions QUAE. https://archimer.ifremer.fr/doc/00818/93012/

Garry Pascal, Rocq Sophie, Le Guyader Soizick (2021). Synthèse de la journée Santé Environnement et Microbiologie 2021. Le 14 décembre 2021, La Cité des Congrès Nantes . RBE/SG2M/LSEM . https://archimer.ifremer.fr/doc/00744/85649/

Varbanov M., Bertrand I., Philippot S., Retourney C., Gardette M., Hartard C., Jeulin H., Duval R.E., Loret J.-F., Schvoerer E., Gantzer C. (2021). Somatic coliphages are conservative indicators of SARS-CoV-2 inactivation during heat and alkaline pH treatments . Science Of The Total Environment , 797, 149112 (8p.) . Publisher's official version : https://doi.org/10.1016/j.scitotenv.2021.149112 , Open Access version : https://archimer.ifremer.fr/doc/00705/81733/

Bonny Patrice, Schaeffer Julien, Besnard Alban, Desdouits Marion, Essia Ngang Jean Justin, Le Guyader Soizick (2021). Human and Animal RNA Virus Diversity Detected by Metagenomics in Cameroonian Clams . Frontiers In Microbiology , 12, 770385 (15p.) . Publisher's official version : https://doi.org/10.3389/fmicb.2021.770385 , Open Access version : https://archimer.ifremer.fr/doc/00737/84861/

Moulin L., Boni M., Cluzel N., Garry Pascal, Le Guyader Soizick, Levert M., Maday Y., Marechal V., Mouchel J.-M., Wang S., Wurtzer S. (2021). L’épidémiologie basée sur les eaux usées, un outil innovant pour le suivi sanitaire des populations : l’exemple du réseau Obépine, sentinelle de l’épidémie de Covid-19 / Wastewater-based epidemiology, an innovative tool for population health monitoring: example of the Obépine network, sentinel of the Covid-19 outbreak . Techniques Sciences Méthodes , Spécial(COVID-19), 21-30 . Publisher's official version : https://doi.org/10.36904/tsm/2021C1921 , Open Access version : https://archimer.ifremer.fr/doc/00735/84665/

Desdouits Marion, Piquet Jean-Come, Jousse Sarah, Wacrenier Candice, Le Mennec Cecile, Parnaudeau Sylvain, Rocq Sophie, Bigault Lionel, Contrant Maud, Garry Pascal, Blanchard Yannick, Le Guyader Soizick (2021). Utiliser les coquillages pour surveiller la contamination du littoral par SARS-CoV-2 ? SFM 2021 - 16e congrès national de la Société Française de Microbiologie « MICROBES ». 22 au 24 septembre 2021, Nantes . https://archimer.ifremer.fr/doc/00727/83880/

Bonny Patrice, Schaeffer Julien, Besnard Alban, Desdouits Marion, Essia Ngang Jean Justin, Le Guyader Soizick (2021). Diversité des virus entériques dans les palourdes du fleuve SANAGA au Cameroun . SFM 2021 - 16e congrès national de la Société Française de Microbiologie « MICROBES ». 22 au 24 septembre 2021, Nantes . https://archimer.ifremer.fr/doc/00727/83884/

Garry Pascal, Ollivier Joanna, Schaeffer Julien, Jousse Sarah, Ccos Obepine , Le Guyader Soizick (2021). Intérêt des essais interlaboratoires dans la validation d’un indicateur national de suivi épidémiologique de l’épidémie de SARS-CoV-2 par les eaux usées (en France) . SFM 2021 - 16e congrès national de la Société Française de Microbiologie « MICROBES ». 22 au 24 septembre 2021, Nantes . https://archimer.ifremer.fr/doc/00727/83882/

Euller Gabriel, Auger Audrey, Breiman Adrien, Jazat Jennifer, Le Moullac-Vaidye Béatrice, Chirat Frédéric, Desdouits Marion, Le Pendu Jacques, Guerardel Yann, Le Guyader Soizick (2021). Caractérisation des glycanes impliqués dans les interactions entre huître et virus entériques humains . SFM 2021 - 16e congrès national de la Société Française de Microbiologie « MICROBES ». 22 au 24 septembre 2021, Nantes. https://archimer.ifremer.fr/doc/00727/83879/

Desdouits Marion, Piquet Jean-Come, Wacrenier Candice, Le Mennec Cecile, Parnaudeau Sylvain, Jousse Sarah, Rocq Sophie, Bigault Lionel, Contrant Maud, Garry Pascal, Chavanon Fabienne, Gabellec Raoul, Lamort Laure, Lebrun Luc, Le Gall Patrik, Meteigner Claire, Schmitt Anne, Seugnet Jean-Luc, Serais Ophelie, Peltier Cécile, Bressolette-Bodin Céline, Blanchard Yannick, Le Guyader Soizick (2021). Can shellfish be used to monitor SARS-CoV-2 in the coastal environment? Science Of The Total Environment , 778, 146270 (11p.) . Publisher's official version : https://doi.org/10.1016/j.scitotenv.2021.146270 , Open Access version : https://archimer.ifremer.fr/doc/00684/79569/

Garry Pascal, Le Guyader Soizick (2021). Rapport d'activités 2020. Laboratoire Santé Environnement et Microbiologie, Laboratoire National de Référence de Microbiologie des coquillages . RBE/SGMM/LSEM 21-03 . https://archimer.ifremer.fr/doc/00691/80332/

Bertrand Isabelle, Challant Julie, Jeulin Hélène, Hartard Cédric, Mathieu Laurence, Lopez Séverine, Scientific Interest Group Obépine , Schvoerer Evelyne, Courtois Sophie, Gantzer Christophe (2021). Epidemiological surveillance of SARS-CoV-2 by genome quantification in wastewater applied to a city in the northeast of France: comparison of ultrafiltration- and protein precipitation-based methods . International Journal Of Hygiene And Environmental Health , 233, 113692 (7p.) . Publisher's official version : https://doi.org/10.1016/j.ijheh.2021.113692 , Open Access version : https://archimer.ifremer.fr/doc/00678/78988/

Razafimahefa Ravo M., Ludwig-Begall Louisa F., Le Guyader Soizick, Farnir Frédéric, Mauroy Axel, Thiry Etienne (2021). Optimisation of a PMAxx™-RT-qPCR Assay and the Preceding Extraction Method to Selectively Detect Infectious Murine Norovirus Particles in Mussels . Food And Environmental Virology , 13(1), 93-106 . Publisher's official version : https://doi.org/10.1007/s12560-020-09454-w , Open Access version : https://archimer.ifremer.fr/doc/00666/77804/

Vincent Hubert Francoise, Wacrenier Candice, Morga Benjamin, Lozach Solen, Quenot Emmanuelle, Mege Mickael, Lecadet Cyrielle, Gourmelon Michele, Hervio-Heath Dominique, Le Guyader Soizick (2021). Passive Samplers, a Powerful Tool to Detect Viruses and Bacteria in Marine Coastal Areas . Frontiers In Microbiology , 12, 631174 (12p.) . Publisher's official version : https://doi.org/10.3389/fmicb.2021.631174 , Open Access version : https://archimer.ifremer.fr/doc/00682/79375/

Wurtzer Sébastien, Maréchal Vincent, Bertrand Isabelle, Boni Mickael, Le Guyader Soizick, Moulin Laurent, Maday Yvon, Gantzer Christophe, Mouchel Jean-Marie (2021). Viral infectious diseases seen through wastewater . Virologie , 25(1), E1-E4 . https://doi.org/10.1684/vir.2021.0882

Wurtzer Sébastien, Maréchal Vincent, Bertrand Isabelle, Boni Mickaël, Le Guyader Soizick, Moulin Laurent, Maday Yvon, Gantzer Christophe, Mouchel Jean-Marie (2021). Maladies infectieuses virales vues au travers des eaux usées . Virologie , 25(1), E8-E11 . https://doi.org/10.1684/vir.2021.0881

Maréchal Vincent, Maday Yvon, Consortium Obépine (2021). OBÉPINE : premier observatoire épidémiologique des eaux usées en France. Synthèse . In Yearbook Santé et Environnement 2021. Pathologies, contaminants, milieu de vie, fondements scientifiques. Part2. Contaminants / Micro-organismes. pp.31-35 .

Maréchal Vincent, Moulin Laurent, Maday Yvon, Boni Mickael, Teyssou Rémy, Wurtzer Sébastien, Mouchel Jean-Marie, Bertrand Isabelle, Gantzer Christophe, Le Guyader Soizick (2021). OBEPINE : une expérience française de suivi de l’épidémie de Covid-19 à travers les eaux usées / OBEPINE: a French experiment to monitor the Covid-19 epidemic through wastewater . Bulletin de l'Académie vétérinaire de France , 174, 12p. Publisher's official version : https://doi.org/10.3406/bavf.2021.70970 , Open Access version : https://archimer.ifremer.fr/doc/00751/86256/

Sala Claudia, Mordhorst Hanne, Grützke Joesphine, Brinkmann Annika, Petersen Thomas N, Poulsen Casper, Cotter Paul D, Crispie Fiona, Ellis Richard J, Castellani Gastone, Amid Clara, Hakhverdyan Mikhayil, Le Guyader Soizick, Manfreda Gerardo, Mossong Joël, Nitsche Andreas, Ragimbeau Catherine, Schaeffer Julien, Schlundt Joergen, Tay Moon Y. F., Aarestrup Frank M., Hendriksen Rene S., Pamp Sünje Johanna, de Cesare Alessandra (2020). Metagenomics-Based Proficiency Test of Smoked Salmon Spiked with a Mock Community . Microorganisms , 8(12), 1861 (16p.) . Publisher's official version : https://doi.org/10.3390/microorganisms8121861 , Open Access version : https://archimer.ifremer.fr/doc/00664/77615/

Desdouits Marion, Piquet Jean-Come, Rocq Sophie, Euller Gabriel, Le Guyader Soizick, Garry Pascal (2020). De la terre à la mer, les microbes sous surveillance . Fête de la science 2020. 09 au 11 octobre 2020, Muséum d'Histoire Naturel, Nantes . https://archimer.ifremer.fr/doc/00675/78756/

Euller Gabriel, Desdouits Marion, Pilven Sophie, Le Guyader Soizick, Garry Pascal (2020). De la terre à la mer. "Usual suspects" de la contamination microbiologique des coquillages . Fête de la science 2020. 09 au 11 octobre 2020, Muséum d'Histoire Naturel, Nantes . https://archimer.ifremer.fr/doc/00675/78754/

Euller Gabriel, Desdouits Marion, Pilven Sophie, Preux Guillemette, Le Guyader Soizick, Garry Pascal (2020). VirOdyssée, la course du norovirus de la terre à la mer . Fête de la science 2020. 09 au 11 octobre 2020, Muséum d'Histoire Naturel, Nantes . https://archimer.ifremer.fr/doc/00675/78757/

Bonny Patrice, Desdouits Marion, Schaeffer Julien, Garry Pascal, Essia Ngang Jean Justin, Le Guyader Soizick (2020). Contamination of Clams with Human Norovirus and a Novel Hepatitis A Virus in Cameroon . Food And Environmental Virology , 12(3), 274-277 . Publisher's official version : https://doi.org/10.1007/s12560-020-09432-2 , Open Access version : https://archimer.ifremer.fr/doc/00635/74745/

Teunis Peter Fm, Le Guyader Soizick, Liu Pengbo, Ollivier Joanna, Moe Christine L (2020). Noroviruses are highly infectious but there is strong variation in host susceptibility and virus pathogenicity . Epidemics , 32, 100401 (21p.) . Publisher's official version : https://doi.org/10.1016/j.epidem.2020.100401 , Open Access version : https://archimer.ifremer.fr/doc/00641/75265/

Desdouits Marion, Wacrenier Candice, Ollivier Joanna, Schaeffer Julien, Le Guyader Soizick (2020). A Targeted Metagenomics Approach to Study the Diversity of Norovirus GII in Shellfish Implicated in Outbreaks . Viruses-basel , 12(9), 978 (17p.) . Publisher's official version : https://doi.org/10.3390/v12090978 , Open Access version : https://archimer.ifremer.fr/doc/00646/75831/

Strubbia Sofia, Schaeffer Julien, Besnard Alban, Wacrenier Candice, Le Mennec Cecile, Garry Pascal, Desdouits Marion, Le Guyader Soizick (2020). Metagenomic to evaluate norovirus genomic diversity in oysters: Impact on hexamer selection and targeted capture-based enrichment . International Journal Of Food Microbiology , 323, 108588 (13p.) . Publisher's official version : https://doi.org/10.1016/j.ijfoodmicro.2020.108588 , Open Access version : https://archimer.ifremer.fr/doc/00614/72575/

Desdouits Marion, de Graaf Miranda, Strubbia Sofia, Oude Munnink Bas B., Kroneman Annelies, Le Guyader Soizick, Koopmans Marion P. G. (2020). Novel opportunities for NGS-based one health surveillance of foodborne viruses . One Health Outlook , 2(1), 14 (8p.) . Publisher's official version : https://doi.org/10.1186/s42522-020-00015-6 , Open Access version : https://archimer.ifremer.fr/doc/00641/75330/

Garry Pascal, Le Guyader Soizick (2020). Rapport d’activités 2019. Laboratoire Santé Environnement et Microbiologie, Laboratoire National de Référence de Microbiologie des coquillages . RBE/SG2M/LSEM . https://archimer.ifremer.fr/doc/00615/72671/

Boukerb Amine Mohamed, Schaeffer Julien, Serghine Joelle, Carrier Gregory, Le Guyader Soizick, Gourmelon Michele (2020). Complete Genome Sequence of Campylobacter armoricus CA639, Which Carries Two Plasmids, Compiled Using Oxford Nanopore and Illumina Sequencing Technologies . Microbiology Resource Announcements , 9(1), e01309-19 (3p.) . Publisher's official version : https://doi.org/10.1128/MRA.01309-19 , Open Access version : https://archimer.ifremer.fr/doc/00600/71164/

Strubbia Sofia, Phan My V. T., Schaeffer Julien, Koopmans Marion, Cotten Matthew, Le Guyader Soizick (2019). Characterization of Norovirus and Other Human Enteric Viruses in Sewage and Stool Samples Through Next-Generation Sequencing . Food And Environmental Virology , 11(4), 400-409 . Publisher's official version : https://doi.org/10.1007/s12560-019-09402-3 , Open Access version : https://archimer.ifremer.fr/doc/00512/62332/

Strubbia Sofia, Schaeffer Julien, Oude Munnink Bas B., Besnard Alban, Phan My V. T., Nieuwenhuijse David F., de Graaf Miranda, Schapendonk Claudia M. E., Wacrenier Candice, Cotten Matthew, Koopmans Marion P. G., Le Guyader Soizick (2019). Metavirome Sequencing to Evaluate Norovirus Diversity in Sewage and Related Bioaccumulated Oysters . Frontiers In Microbiology , 10(2394), 13p. Publisher's official version : https://doi.org/10.3389/fmicb.2019.02394 , Open Access version : https://archimer.ifremer.fr/doc/00586/69765/

Strubbia Sofia, Schaeffer Julien, Phan My Vt, Cotten Matthew, Oude Munnik Bas B., Nieuwenhuijse David F., Koopmans Marion, Le Guyader Soizick (2019). Metagenomic approach to study norovirus diversity in sewage and oyster samples . 7th Meeting of The European Society for Virology (ESV). 28 April - 1 May 2019 in Rotterdam, the Netherlands .

Desdouits Marion, Garry Pascal, Gourmelon Michele, Hervio Heath Dominique, Hubert Francoise, Kaelin Gaelle, Kergaravat Cedric, Le Mennec Cecile, Le Guyader Soizick, Loiseau Veronique, Lozach Solen, Maillot Jessica, Ollivier Joanna, Parnaudeau Sylvain, Piquet Jean-Come, Quenot Emmanuelle, Rocq Sophie, Schaeffer Julien, Serghine Joelle, Vallade Emilie, Veron Antoine, Wacrenier Candice (2019). Rapport d’activités 2018 – Laboratoire Santé Environnement et Microbiologie. RBE/SG2M/LSEM 18-1 . https://archimer.ifremer.fr/doc/00491/60218/

Schaeffer Julien, Besnard Alban, Strubbia Sofia, Le Guyader Soizick (2019). Enteric virus diversity in sewages collected during last decade . 7th Meeting of The European Society for Virology (ESV). 28 April - 1 May 2019 in Rotterdam, the Netherlands .

Strubbia Sofia, Schaeffer Julien, Besnard Alban, Le Guyader Soizick (2019). Etude de la diversité des norovirus dans les eaux usées par la métagénomique . XXIe Journées Francophones de Virologie. 28 au 29 mars 2019 à l'ENS de Lyon .

Le Guyader Soizick, Garry Pascal, Ollivier Joanna, Piquet Jean-Come (2019). Microbiologie et coquillages : des enjeux et des développements futurs / Microbiology and shellfish : issues and future developments . Bulletin de l'Académie vétérinaire de france , (172), 6pp. Publisher's official version : https://doi.org/10.4267/2042/70602 , Open Access version : https://archimer.ifremer.fr/doc/00599/71141/

Schaeffer Julien, Treguier Cathy, Piquet Jean-Come, Gachelin Sonia, Cochennec-Laureau Nathalie, Le Saux Jean-Claude, Garry Pascal, Le Guyader Soizick (2018). Improving the efficacy of sewage treatment decreases norovirus contamination in oysters . International Journal Of Food Microbiology , 286, 1-5 . Publisher's official version : https://doi.org/10.1016/j.ijfoodmicro.2018.07.016 , Open Access version : https://archimer.ifremer.fr/doc/00450/56140/

Bosch Albert, Gkogka Elissavet, Le Guyader Soizick, Loisy-Hamon Fabienne, Lee Alvin, Van Lieshout Lilou, Marthi Balkumar, Myrmel Mette, Sansom Annette, Schultz Anna Charlotte, Winkler Anett, Zuber Sophie, Phister Trevor (2018). Foodborne viruses: Detection, risk assessment, and control options in food processing . International Journal Of Food Microbiology , 285, 110-128 . Publisher's official version : https://doi.org/10.1016/j.ijfoodmicro.2018.06.001 , Open Access version : https://archimer.ifremer.fr/doc/00443/55507/

Schaeffer Julien, Treguier Cathy, Le Guyader Soizick, Gachelin Sonia (2018). Station d'épuration modernisée: qualité des coquillages améliorée . Journée pour la santé, l'environnement et la microbiologie 2018. 18 octobre 2018, Nantes .

Lapegue Sylvie, Bechemin Christian, Le Guyader Soizick, Stavrakakis Christophe, Rivet Florence (2018). Rapport d’activités 2017 de l’unité SG2M, Santé Génétique et Microbiologie des Mollusques . R.RBE/SG2M/2018-01 .

Monnot Mathias, Pinchai Chamaiporn, Cordier Clemence, Lefevre Sébastien, Le Mennec Cecile, Le Guyader Soizick, Stavrakakis Christophe, Moulin Philippe (2018). Concentration by membrane filtration before wet air oxidation for full intensified wastewater treatment . Euromembranes 2018. 9th - 13th July 2018, Valencia .

Miura Takayuki, Schaeffer Julien, Le Saux Jean-Claude, Le Mehaute Philippe, Le Guyader Soizick (2018). Virus Type-Specific Removal in a Full-Scale Membrane Bioreactor Treatment Process . Food And Environmental Virology , 10(2), 176-186 . Publisher's official version : https://doi.org/10.1007/s12560-017-9330-4 , Open Access version : https://archimer.ifremer.fr/doc/00414/52548/

Garry Pascal, Le Guyader Soizick (2018). Rapport d’activités 2017. Laboratoire Santé Environnement et Microbiologie. Laboratoire National de Référence de Microbiologie des coquillages . https://archimer.ifremer.fr/doc/00465/57686/

Polo David, Schaeffer Julien, Teunis Peter, Buchet Vincent, Le Guyader Soizick (2018). Infectivity and RNA Persistence of a Norovirus Surrogate, the Tulane Virus, in Oysters . Frontiers In Microbiology , 9(716), 8p. Publisher's official version : https://doi.org/10.3389/fmicb.2018.00716 , Open Access version : https://archimer.ifremer.fr/doc/00436/54736/

Randazzo Walter, Khezri Mohammad, Ollivier Joanna, Le Guyader Soizick, Rodriguez-Diaz Jesus, Aznar Rosa, Sanchez Gloria (2018). Optimization of PMAxx pretreatment to distinguish between human norovirus with intact and altered capsids in shellfish and sewage samples . International Journal Of Food Microbiology , 266, 1-7 . Publisher's official version : https://doi.org/10.1016/j.ijfoodmicro.2017.11.011 , Open Access version : https://archimer.ifremer.fr/doc/00411/52208/

McLeod Catherine, Polo David, Le Saux Jean-Claude, Le Guyader Soizick (2017). Depuration and Relaying: A Review on Potential Removal of Norovirus from Oysters . Comprehensive Reviews In Food Science And Food Safety , 16(4), 692-706 . Publisher's official version : https://doi.org/10.1111/1541-4337.12271 , Open Access version : https://archimer.ifremer.fr/doc/00393/50444/

Hubert Francoise, Morga Benjamin, Renault Tristan, Le Guyader Soizick (2017). Adsorption of norovirus and ostreid herpesvirus type 1 to polymer membranes for the development of passive samplers . Journal Of Applied Microbiology , 122(4), 1039-1047 . Publisher's official version : https://doi.org/10.1111/jam.13394 , Open Access version : https://archimer.ifremer.fr/doc/00365/47646/

Garry Pascal, Hervio Heath Dominique, Le Guyader Soizick (2017). Rapport d’activités 2016. Laboratoire Santé Environnement et Microbiologie, Laboratoire National de Référence de Microbiologie des coquillages . https://archimer.ifremer.fr/doc/00433/54493/

Le Mennec Cecile, Parnaudeau Sylvain, Rumebe Myriam, Le Saux Jean-Claude, Piquet Jean-Come, Le Guyader Soizick (2017). Follow-Up of Norovirus Contamination in an Oyster Production Area Linked to Repeated Outbreaks . Food And Environmental Virology , 9(1), 54-61 . https://doi.org/10.1007/s12560-016-9260-6

de Graaf Miranda, Beck Relja, Caccio Simone M., Duim Birgitta, Fraaij Pieter L. A., Le Guyader Soizick, Lecuit Marc, Le Pendu Jacques, de Wit Emmie, Schultsz Constance (2017). Sustained fecal-oral human-to-human transmission following a zoonotic event . Current Opinion In Virology , 22, 1-6 . Publisher's official version : https://doi.org/10.1016/j.coviro.2016.11.001 , Open Access version : https://archimer.ifremer.fr/doc/00358/46959/

Koopmans M., Bosch A., Le Guyader Soizick (2017). Viruses . In Foodborne Diseases. third edition. 2017. Christine E.R. Dodd, Tim Aldsworth, Richard A. Stein, Dean O. Cliver, Hans P. Riemann (Eds). ISBN 978-0-12-385007-2. Part.2 : Pathogens Responsible for Infectious Disease.chap.14, pp.289-303 (Academic Press Ltd-elsevier Science Ltd) . https://archimer.ifremer.fr/doc/00748/86033/

Le Guyader Soizick, Cahu Chantal (2017). Produits de la mer et santé publique . In L'océan à découvert. 2017. ISBN : 978-2-271-11652-9. Partie 5 Les usages de l'océan. 13. pp. 204-205 (CNRS Editions) .

Le Guyader Soizick, Cahu Chantal (2017). Seafood and public health . In The Ocean revealed. ISBN 978-2-271-11907-0. Part 5, 13. pp.204-205 (CNRS Editions) .

Polo David, Schaeffer Julien, Fournet Nelly, Le Saux Jean-Claude, Parnaudeau Sylvain, McLeod Catherine, Le Guyader Soizick (2016). Digital PCR for Quantifying Norovirus in Oysters Implicated in Outbreaks, France . Emerging Infectious Diseases , 22(12), 2189-2191 . Publisher's official version : https://doi.org/10.3201/eid2212.160841 , Open Access version : https://archimer.ifremer.fr/doc/00359/46971/

Miura Takayuki, Lhomme Sebastien, Le Saux Jean-Claude, Le Mehaute Philippe, Guillois Yvonnick, Couturier Elizabeth, Izopet Jacques, Abranavel Florence, Le Guyader Soizick (2016). Detection of Hepatitis E Virus in Sewage After an Outbreak on a French Island . Food And Environmental Virology , 8(3), 194-199 . Publisher's official version : https://doi.org/10.1007/s12560-016-9241-9 , Open Access version : https://archimer.ifremer.fr/doc/00334/44482/

Lapegue Sylvie, Renault Tristan, Bechemin Christian, Le Guyader Soizick, Stavrakakis Christophe, Rivet Florence (2016). Rapport d'activités 2015 de l'Unité SG2M : Santé, Génétique et Microbiologie des Mollusques . https://archimer.ifremer.fr/doc/00319/43055/

Garry Pascal, Le Saux Jean-Claude, Hervio Heath Dominique, Le Guyader Soizick (2016). Rapport d’activités 2015. Laboratoire Santé Environnement et Microbiologie. Laboratoire National de Référence de Microbiologie des coquillages . https://archimer.ifremer.fr/doc/00380/49138/

Guillois Yvonnick, Abravanel Florence, Miura Takayuki, Pavio Nicole, Vaillant Veronique, Lhomme Sebastien, Le Guyader Soizick, Rose Nicolas, Le Saux Jean-Claude, King Lisa A., Izopet Jacques, Couturier Elisabeth (2016). High Proportion of Asymptomatic Infections in an Outbreak of Hepatitis E Associated With a Spit-Roasted Piglet, France, 2013 . Clinical Infectious Diseases , 62(3), 351-357 . https://doi.org/10.1093/cid/civ862

Bouchoucha Marc, Piquet Jean-Come, Chavanon Fabienne, Dufresne C., Le Guyader Soizick (2016). Faecal contamination of echinoderms: first report of heavy Escherichia coli loading of sea urchins from a natural growing area . Letters In Applied Microbiology , 62(2), 105-110 . Publisher's official version : https://doi.org/10.1111/lam.12524 , Open Access version : https://archimer.ifremer.fr/doc/00310/42086/

Guillois Yvonnick, Abravanel Florence, Miura Takayuki, Pavio Nicole, Vaillant Véronique, Lhomme Sébastien, Le Guyader Soizick, Rose Nicolas, Le Saux Jean-Claude, King Lisa A., Izopet Jacques, Couturier Elisabeth (2016). Épidémie d'hépatite E associée à la consommation d'un porcelet grillé à la broche, Bretagne, 2013 . BEH. Bulletin Epidémiologique Hebdomadaire , (26-27), 444-449 . Open Access version : https://archimer.ifremer.fr/doc/00909/102138/

Farkas Tibor, Singh Amy, Le Guyader Soizick, La Rosa Giuseppina, Saif Linda, McNeal Monica (2015). Multiplex real-time RT-PCR for the simultaneous detection and quantification of GI, GII and GIV noroviruses . Journal Of Virological Methods , 223, 109-114 . https://doi.org/10.1016/j.jviromet.2015.07.020

Treguier Cathy, Schaeffer Julien, Le Saux Jean-Claude, Le Guyader Soizick, Cochennec-Laureau Nathalie (2015). Contamination des coquillages par les norovirus en rivière d'Auray en lien avec la rénovation d'une station d'épuration littorale . 31ème Salon de la conchyliculture et des cultures marines. 8 et 9 septembre 2015, Vannes . https://archimer.ifremer.fr/doc/00312/42358/

Loury P., Le Guyader Soizick, Le Saux Jean-Claude, Ambert-Balay K., Parrot P., Hubert B. (2015). A norovirus oyster-related outbreak in a nursing home in France, January 2012 . Epidemiology & Infection , 143(12), 2486-2493 . https://doi.org/10.1017/S0950268814003628

Treguier Cathy, Schaeffer Julien, Le Saux Jean-Claude, Le Guyader Soizick, Cochennec-Laureau Nathalie (2015). Contamination des coquillages par les norovirus en rivière d'Auray en lien avec la rénovation d'une station d'épuration littorale . 2nde édition du colloque "Qualité sanitaire des eaux de baignade et conchylicoles"- RiskManche. 3 décembre 2015, Brest .

Drouaz Najoua, Schaeffer Julien, Farkas Tibor, Le Pendu Jacques, Le Guyader Soizick (2015). Tulane Virus as a Potential Surrogate To Mimic Norovirus Behavior in Oysters . Applied And Environmental Microbiology , 81(15), 5249-5256 . Publisher's official version : https://doi.org/10.1128/AEM.01067-15 , Open Access version : https://archimer.ifremer.fr/doc/00275/38633/

Renault Tristan, Lapegue Sylvie, Le Guyader Soizick, Hatt Philippe-Jacques, Rivet Florence (2015). Rapport d'activités 2014 de l'Unité SG2M. Santé, Génétique et Microbiologie des mollusques . https://archimer.ifremer.fr/doc/00283/39455/

Gourmelon Michele, Baliere Charlotte, Caprais Marie-Paule, Cozien Joelle, Garry Pascal, Hervio Heath Dominique, Hubert Celine, Le Saux Jean-Claude, Le Guyader Soizick, Lozach Solen, Parnaudeau Sylvain, Quenot Emmanuelle, Strubia S., Veron Antoine, Baliere Cl., Bruey Q., Giard J-C, Rince I., Jarde E., Harrault L., Jeanneau L., Petitjean P., Cheve Julien, Rince Alain (2015). Recherche de bactéries potentiellement pathogènes et de norovirus dans de zones conchylicoles de Bretagne et Normandie et leurs bassins versants. Identification des sources de contamination fécale . QSPA 2015 - Colloque Qualité et Sécurité des Produits Aquatiques, 17, 18-19 Juin 2015, Boulogne-sur-Mer .

Schaeffer Julien, Treguier Cathy, Le Saux Jean-Claude, Le Guyader Soizick (2015). La rénovation d’une station d'épuration : quel impact sur la contamination virale des coquillages ? QSPA 2015 Colloque Qualité et Sécurité des Produits Aquatiques, 17, 18-19 Juin 2015, Boulogne-sur-Mer .

Treguier Cathy, Schaeffer Julien, Le Saux Jean-Claude, Cochennec-Laureau Nathalie, Le Guyader Soizick (2015). Contamination des coquillages par les norovirus en rivière d'Auray (Norocoqauray) . RST/LER/MPL/15.08 . https://archimer.ifremer.fr/doc/00267/37778/

Grodzki Marco, Schaeffer Julien, Piquet Jean-Come, Le Saux Jean-Claude, Cheve Julien, Ollivier Joanna, Le Pendu Jacques, Le Guyader Soizick (2014). Bioaccumulation Efficiency, Tissue Distribution, and Environmental Occurrence of Hepatitis E Virus in Bivalve Shellfish from France . Applied And Environmental Microbiology , 80(14), 4269-4276 . Publisher's official version : https://doi.org/10.1128/AEM.00978-14 , Open Access version : https://archimer.ifremer.fr/doc/00204/31501/

Parnaudeau Sylvain, Le Mennec Cecile, Miura Takayuki, Le Saux Jean-Claude, Le Guyader Soizick (2014). Virus entériques humains et coquillages . Bulletin de l'Académie vétérinaire de France , 167(3), 227-233 . Publisher's official version : https://doi.org/10.4267/2042/54194 , Open Access version : https://archimer.ifremer.fr/doc/00317/42849/

Le Guyader Soizick, Ollivier Joanna, Le Saux Jean-Claude, Garry Pascal (2014). Les virus entériques humains et l’eau . Revue Francophone des Laboratoires , 2014(459), 41-49 . https://doi.org/10.1016/S1773-035X(14)72363-9

Miura Takayuki, Parnaudeau Sylvain, Grodzki Marco, Okabe Satoshi, Atmar Robert L., Le Guyader Soizick (2013). Environmental detection of Genogroup I, II, and IV Noroviruses by using a generic Real-Time Reverse Transcription-PCR Assay . Applied And Environmental Microbiology , 79(21), 6585-6592 . Publisher's official version : https://doi.org/10.1128/AEM.02112-13 , Open Access version : https://archimer.ifremer.fr/doc/00162/27313/

Schaeffer Julien, Le Saux Jean-Claude, Lora Monica, Atmar Robert L., Le Guyader Soizick (2013). Norovirus contamination on French marketed oysters . International Journal Of Food Microbiology , 166(2), 244-248 . Publisher's official version : https://doi.org/10.1016/j.ijfoodmicro.2013.07.022 , Open Access version : https://archimer.ifremer.fr/doc/00152/26367/

Le Guyader Soizick, Maalouf Haifa, Le Pendu Jacques (2013). Huîtres et norovirus : une affinité particulière? Virologie , 17(4), 253-263 . Publisher's official version : https://doi.org/10.1684/vir.2013.0508 , Open Access version : https://archimer.ifremer.fr/doc/00152/26357/

Thebault Anne, Teunis Peter F. M., Le Pendu Jacques, Le Guyader Soizick, Denis Jean-Baptiste (2013). Infectivity of GI and GII noroviruses established from oyster related outbreaks . Epidemics , 5(2), 98-110 . Publisher's official version : https://doi.org/10.1016/j.epidem.2012.12.004 , Open Access version : https://archimer.ifremer.fr/doc/00148/25927/

Ventrone Iole, Schaeffer Julien, Ollivier Joanna, Parnaudeau Sylvain, Pepe Tiziana, Le Pendu Jacques, Le Guyader Soizick (2013). Chronic or accidental exposure of oysters to Norovirus: is there any difference in contamination? Journal Of Food Protection , 76(3), 505-509 . https://doi.org/10.4315/0362-028X.JFP-12-296

Benabbes Laila, Ollivier Joanna, Schaeffer Julien, Parnaudeau Sylvain, Rhaissi Houria, Nourlil Jalal, Le Guyader Soizick (2013). Norovirus and Other Human Enteric Viruses in Moroccan Shellfish . Food And Environmental Virology , 5(1), 35-40 . Publisher's official version : https://doi.org/10.1007/s12560-012-9095-8 , Open Access version : https://archimer.ifremer.fr/doc/00130/24102/

Le Guyader Soizick, Atmar Robert, Maalouf Haifa, Le Pendu Jacques (2013). Shellfish contamination by norovirus : strain selection based on ligand expression? Rinsho to uirusu. Clinical virology , 41(1), 3-18 . Open Access version : https://archimer.ifremer.fr/doc/00150/26093/

Pommepuy Monique, Derrien Annick, Le Guyader Soizick, Menard Dominique, Caprais Marie-Paule, Dubois Eric, Dupray Elisabeth, Gourmelon Michele (2013). Microbial Water Quality on a Caribbean Island (Martinique) . In Small Islands Marine Science and Sustainable Development. George A. Maul (Ed). 2013. ISBN:9780875902654. Coastal and Estuarine Studies vol.51 , chap.17, pp.284-297 (Wiley) .

Le Saux Jean-Claude, Lora M., Schaeffer Julien, Poiraud G., Le Guyader Soizick (2013). Prévalence des norovirus dans les huîtres mises sur le marché dans le Département de la Vendée. Période février 2010-mai 2011 . Convention DGAL 2010-2011 RI/MIC-LNR/ EV 02.2012 . https://archimer.ifremer.fr/doc/00185/29650/

Le Guyader Soizick, Miura Takayuki, Atmar Robert L. (2013). Prevalence and control of norovirus and hepatitis A virus in shellfish . In Foodborne viruses and prions and their significance for public health. Food safety assurance and veterinary public health – volume 6. Editors : Frans J.M. Smulders, Birgit Nørrung and Herbert Budka. ISBN: 978-90-8686-226-9 DOI: http://dx.doi.org/10.3920/978-90-8686-780-6. Part 1 - Viruses, pp. 137-168.

Thebault Anne, Le Saux Jean-Claude, Pommepuy Monique, Le Guyader Soizick, Lailler R., Denis J.-B. (2012). Quantitative Approach of Risk Management Strategies for Hepatitis A Virus-Contaminated Oyster Production Areas . Journal Of Food Protection , 75(7), 1249-1257 . https://doi.org/10.4315/0362-028X.JFP-11-411

Vaillant Véronique, Jourdan-Da Silva Nathalie, Quilici Marie-Laure, Couturier Elisabeth, Le Guyader Soizick, Delmas Gilles, Le Saux Jean-Claude (2012). Surveillance des risques biologiques liés à la consommation de coquillages en France . Bulletin Epidemiologique Hebdomadaire , HS, 34-37 . Open Access version : https://archimer.ifremer.fr/doc/00092/20362/

Grodzki Marco, Ollivier Joanna, Le Saux Jean-Claude, Piquet Jean-Come, Noyer Mathilde, Le Guyader Soizick (2012). Impact of Xynthia Tempest on Viral Contamination of Shellfish . Applied And Environmental Microbiology , 78(9), 3508-3511 . Publisher's official version : https://doi.org/10.1128/AEM.07604-11 , Open Access version : https://archimer.ifremer.fr/doc/00079/18992/

Le Guyader Soizick, Atmar Robert L., Le Pendu Jacques (2012). Transmission of viruses through shellfish: when specific ligands come into play . Current Opinion In Virology , 2(1), 103-110 . Publisher's official version : https://doi.org/10.1016/j.coviro.2011.10.029 , Open Access version : https://archimer.ifremer.fr/doc/00114/22516/

Le Guyader Soizick, Ollivier Joanna, Le Saux Jean-Claude, Haugarreau Larissa, Pommepuy Monique (2012). Les Norovirus humains et animaux. Intérêt pour la discrimination de l’origine de la contamination dans les eaux et les coquillages / Interest of human and animal norovirus for source tracking . Techniques Sciences Méthodes , (3), 36-42 . https://doi.org/10.1051/tsm/201203036

EFSA Panel on Biological Hazards (2012). Scientific Opinion on Norovirus (NoV) in oysters: methods, limits and control options . European Food Safety Authority (EFSA) , Ref. EFSA/2012 , 39p. https://archimer.ifremer.fr/doc/00066/17735/

Thomas Adeline, Le Saux Jean-Claude, Ollivier Joanna, Maalouf Haifa, Pommepuy Monique, Le Guyader Soizick (2011). Norovirus et huîtres : de la terre à la mer ! Virologie , 15(6), 353-360 . Publisher's official version : https://doi.org/10.2903/j.efsa.2011.2190 , Open Access version : https://archimer.ifremer.fr/doc/00060/17118/

Sima Laura C., Schaeffer Julien, Le Saux Jean-Claude, Parnaudeau Sylvain, Elimelech Menachem, Le Guyader Soizick (2011). Calicivirus Removal in a Membrane Bioreactor Wastewater Treatment Plant . Applied And Environmental Microbiology , 77(15), 5170-5177 . Publisher's official version : https://doi.org/10.1128/AEM.00583-11 , Open Access version : https://archimer.ifremer.fr/doc/00043/15378/

Maalouf Haifa, Schaeffer Julien, Parnaudeau Sylvain, Le Pendu Jacques, Atmar Robert L., Crawford Sue E., Le Guyader Soizick (2011). Strain-Dependent Norovirus Bioaccumulation in Oysters . Applied And Environmental Microbiology , 77(10), 3189-3196 . Publisher's official version : https://doi.org/10.1128/AEM.03010-10 , Open Access version : https://archimer.ifremer.fr/doc/00036/14753/

Le Saux Jean-Claude, Mouillard Gilbert, Ollivier Joanna, Lora Monica, Parnaudeau Sylvain, Bougeard Morgane, Pommepuy Monique, Le Guyader Soizick (2011). Contamination des coquillages par le virus de l’hépatite A en baie de Paimpol : identification des voies de transfert (Décembre 2009-Décembre 2010) . Convention 11/1219213/BF .

Pommepuy Monique, Dupied Simon, Bougeard Morgane, Le Saux Jean-Claude, Le Mennec Cecile, Gueguen M., Stanisiere Jean-Yves, Le Guyader Soizick (2011). Etude des cinétiques de contamination et de décontamination de Crassostrea gigas en Escherichia coli en bassin .

Bosch Albert, Sanchez Gloria, Abbaszadegan Morteza, Carducci Annalaura, Guix Susana, Le Guyader Soizick, Netshikweta Rembuluwani, Pinto Rosa M., Van Der Poel Wim H. M., Rutjes Saskia, Sano Daisuke, Taylor Maureen B., Van Zyl Walda B., Rodriguez-Lazaro David, Kovac Katarina, Sellwood Jane (2011). Analytical Methods for Virus Detection in Water and Food . Food Analytical Methods , 4(1), 4-12 . Publisher's official version : https://doi.org/10.1007/s12161-010-9161-5 , Open Access version : https://archimer.ifremer.fr/doc/00031/14191/

Bosch Albert, Bidawid Sabah, Le Guyader Soizick, Lees D., Jaykus L.A. (2011). Norovirus and Hepatitis A virus in shellfish, soft fruits and water . In Rapid Detection, Identification, and Quantification of Foodborne Pathogens (Ed. by J. Hoorfar) . https://archimer.ifremer.fr/doc/00066/17769/

ANSES (2011). Avis relatif à une évaluation du risque lié à la réouverture d'une zone conchylicole fermée pour cause de présence avérée de calicivirus (norovirus et sapovirus) dans les coquillages vivants . Direction Générale de l'Alimentation , Ref. Anses - Saisine n° 2011-SA-0022 , 18p. https://archimer.ifremer.fr/doc/00027/13775/

EFSA Panel on Biological Hazards (2011). Scientific Opinion on an update on the present knowledge on the occurrence and control of foodborne viruses . European Food Safety Authority (EFSA) , Ref. EFSA/2011 , 96p. https://archimer.ifremer.fr/doc/00066/17734/

Zakhour Maha, Maalouf Haifa, Di Bartolo Ilaria, Haugarreau Larissa, Le Guyader Francoise, Ruvoen-Clouet Nathalie, Le Saux Jean-Claude, Ruggeri Franco Maria, Pommepuy Monique, Le Pendu Jacques (2010). Bovine Norovirus: Carbohydrate Ligand, Environmental Contamination, and Potential Cross-Species Transmission via Oysters . Applied And Environmental Microbiology , 76(19), 6404-6411 . Publisher's official version : https://doi.org/10.1128/AEM.00671-10 , Open Access version : https://archimer.ifremer.fr/doc/00014/12534/

Maalouf Haifa, Pommepuy Monique, Le Guyader Soizick (2010). Environmental Conditions Leading to Shellfish Contamination and Related Outbreaks . Food And Environmental Virology , 2(3), 136-145 . Publisher's official version : https://doi.org/10.1007/s12560-010-9043-4 , Open Access version : https://archimer.ifremer.fr/doc/00011/12252/

Richards Gary P., McLeod Catherine, Le Guyader Soizick (2010). Processing Strategies to Inactivate Enteric Viruses in Shellfish . Food And Environmental Virology , 2(3), 183-193 . Publisher's official version : https://doi.org/10.1007/s12560-010-9045-2 , Open Access version : https://archimer.ifremer.fr/doc/00011/12253/

Bosch Albert, Le Guyader Soizick (2010). Viruses in Shellfish INTRODUCTION . Food And Environmental Virology , 2(3), 115-116 . Publisher's official version : https://doi.org/10.1007/s12560-010-9046-1 , Open Access version : https://archimer.ifremer.fr/doc/00011/12251/

Maalouf Haifa, Zakhour Maha, Le Pendu Jacques, Le Saux Jean-Claude, Atmar Robert L., Le Guyader Francoise S. (2010). Distribution in Tissue and Seasonal Variation of Norovirus Genogroup I and II Ligands in Oysters . Applied And Environmental Microbiology , 76(16), 5621-5630 . Publisher's official version : https://doi.org/10.1128/AEM.00148-10 , Open Access version : https://archimer.ifremer.fr/doc/00011/12215/

Butot Sophie, Le Guyader Soizick, Krol Joanna, Putallaz Thierry, Amoroso Richard, Sanchez Gloria (2010). Evaluation of various real-time RT-PCR assays for the detection and quantitation of human norovirus . Journal Of Virological Methods , 167(1), 90-94 . Publisher's official version : https://doi.org/10.1016/j.jviromet.2010.03.018 , Open Access version : https://archimer.ifremer.fr/doc/00006/11760/

Le Guyader Soizick, Krol Joanna, Ambert-Balay Katia, Ruvoen-Clouet Nathalie, Desaubliaux Benedicte, Parnaudeau Sylvain, Le Saux Jean-Claude, Ponge Agnes, Pothier Pierre, Atmar Robert L., Le Pendu Jacques (2010). Comprehensive Analysis of a Norovirus-Associated Gastroenteritis Outbreak, from the Environment to the Consumer . Journal Of Clinical Microbiology , 48(3), 915-920 . Publisher's official version : https://doi.org/10.1128/JCM.01664-09 , Open Access version : https://archimer.ifremer.fr/doc/00002/11309/

Atmar Robert, Neill Frederick, Le Guyader Soizick (2010). Detection of Human Caliciviruses in Fecal Samples by RT-PCR . In Diagnostic Virology Protocols, Methods in Molecular Biology (John R. Stephenson and Alan Warnes (eds.)) .

Gourmelon Michele, Lazure Pascal, Hervio Heath Dominique, Le Saux Jean-Claude, Caprais Marie-Paule, Le Guyader Soizick, Catherine Martial, Pommepuy Monique (2010). Microbial modelling in coastal environments and early warning systems: useful tools to limit shellfish microbial contamination . In Safe Management of Shellfish and Harvest Waters (G. Rees, K. Pond, D. Kay, J. Bartram and J. Santo Domingo) .

Le Guyader Soizick, Le Saux Jean-Claude, Delmas Guy, Krol Joanna, Ambert-Balay Katia (2009). Virus Aichi, norovirus, astrovirus, entérovirus et rotavirus impliqués dans des cas de gastroentérites suite à la consommation d’huîtres . Virologie , 13(6), 327-329 . Open Access version : https://archimer.ifremer.fr/doc/00002/11301/

Pommepuy Monique, Le Guyader Soizick, Le Saux Jean-Claude, Catherine Martial, Joanny Michel, Camus Patrick (2009). Impacts of microbiological contamination on the marine environment of the North-East Atlantic . European Commission , Ref. OSPAR 09/11 , 26p.

Luz Vilarino M., Le Guyader Soizick, Polo David, Schaeffer Julien, Krol Joanna, Romalde Jesus L. (2009). Assessment of human enteric viruses in cultured and wild bivalve molluscs . International Microbiology , 12(3), 145-151 . Publisher's official version : https://doi.org/10.2436/20.1501.01.92 , Open Access version : https://archimer.ifremer.fr/doc/00000/6957/

Le Guyader Soizick, Pommepuy Monique, Atmar Robert (2009). Monitoring viral contamination in shellfish growing areas . In New technologies in aquaculture: Improving production efficiency, quality and environmental management (Edited by G Burnell, University College Cork, Ireland and G Allan, NSW Department of Primary Industries, Australia) . https://archimer.ifremer.fr/doc/00015/12606/

Bougeard Morgane, Le Saux Jean-Claude, Perenne Nicolas, Le Guyader Soizick, Pommepuy Monique (2009). Modeling of Faecal Contamination in Water from Catchment to Shellfish Growing Area . ICMSS09 – Nantes, France – June 2009 . https://archimer.ifremer.fr/doc/00066/17748/

Guillois-Becel Y., Couturier E., Le Saux Jean-Claude, Roque-Afonso A. M., Le Guyader Soizick, Le Goas A., Pernes J., Le Bechec S., Briand A., Robert C., Dussaix E., Pommepuy Monique, Vaillant V. (2009). An oyster-associated hepatitis A outbreak in France in 2007 . Eurosurveillance , 14(10), 1-6 . Open Access version : https://archimer.ifremer.fr/doc/00000/6685/

Le Guyader Soizick, Parnaudeau Sylvain, Schaeffer Julien, Bosch Albert, Loisy Fabienne, Pommepuy Monique, Atmar Robert L. (2009). Detection and Quantification of Noroviruses in Shellfish . Applied and environmental microbiology , 75(3), 618-624 . Publisher's official version : https://doi.org/10.1128/AEM.01507-08 , Open Access version : https://archimer.ifremer.fr/doc/00000/6137/

Bosch Albert, Pinto R.M., Le Guyader Soizick (2009). Viral contaminants of molluscan shellfish: detection and characterisation . In Shellfish safety and quality (Edited by S E Shumway, University of Connecticut and G E Rodrick, University of Florida, USA) . https://archimer.ifremer.fr/doc/00066/17768/

Pommepuy Monique, Le Saux Jean-Claude, Hervio Heath Dominique, Le Guyader Soizick (2009). Monitoring viral contamination of molluscan shellfish . In Shellfish safety and quality (Edited by S E Shumway, University of Connecticut and G E Rodrick, University of Florida, USA) . https://archimer.ifremer.fr/doc/00015/12607/

Le Saux Jean-Claude, Le Vaillant Gael, Guillermou Ghislain, Vilbas Jean-Valere, Deter Julie, Delyon Bernard, Le Guyader Soizick, Pommepuy Monique (2009). Prediction of faecal contamination in shellfish production areas: Interest and limits of the salinity parameter . ICMSS09 – Nantes, France – June 2009 . https://archimer.ifremer.fr/doc/00066/17751/

Guillois-Bécel Y., Couturier E., Le Saux Jean-Claude, Roque-Afonso A.M., Le Guyader Soizick, Le Goas A., Pernes J., Le Bechec S., Briand A., Robert C., Dussaix E., Pommepuy Monique, Vaillant C. (2009). Investigation of a hepatitis A outbreak due to oyster consumption in France in 2007 . ICMSS09 – Nantes, France – June 2009 . https://archimer.ifremer.fr/doc/00066/17750/

Le Saux Jean-Claude, Serais Ophelie, Krol Joanna, Parnaudeau Sylvain, Salvagnac P., Delmas G., Cicchelero V., Claudet J., Pothier P., Balay K., Fiandrino Annie, Pommepuy Monique, Le Guyader Soizick (2009). Evidence of the presence of viral shellfish contamination in shellfish after short rainfall events . Journal of Shellfish Research Open Access version : https://archimer.ifremer.fr/doc/00066/17736/

Lassus Patrick (ed.), Abarnou Alain, Arnich Nathalie, Amzil Zouher, Biré Ronel, Frémy Jean-Marc, Hervio Heath Dominique, Hess Philipp, Massé Anthony, Pommepuy Monique (2009). Proceedings of the seventh International Conference on Molluscan Shellfish Safety - ICMSS09. Nantes, France, 14-19 June 2009 .

Pommepuy Monique, Le Guyader Francoise, Atmar R. L. (2009). Monitoring viral contamination in shellfish growing aeras . In New technologies in aquaculture (Edited by Gavin Burnell and Geoff Allan) .

Le Guyader Soizick, Le Saux Jean-Claude, Ambert-Balay Katia, Krol Joanna, Serais Ophelie, Parnaudeau Sylvain, Giraudon Helene, Delmas Gilles, Pommepuy Monique, Pothier Pierre, Atmar Robert L. (2008). Aichi Virus, Norovirus, Astrovirus, Enterovirus, and Rotavirus Involved in Clinical Cases from a French Oyster-Related Gastroenteritis Outbreak . Journal of Clinical Microbiology , 46(12), 4011-4017 . Publisher's official version : https://doi.org/10.1128/JCM.01044-08 , Open Access version : https://archimer.ifremer.fr/doc/00000/6099/

Da Silva Allegra K., Le Guyader Francoise S., Le Saux Jean-Claude, Pommepuy Monique, Montgomery Maggie A., Elimelech Menachem (2008). Norovirus Removal and Particle Association in a Waste Stabilization Pond . Environmental Science & Technology , 42(24), 9151-9157 . https://doi.org/10.1021/es802787v

Le Guyader Soizick, Atmar Robert (2008). A scientific review of binding and inactivation of viruses on and in food, with a focus on the role of the matrix . In Food-Borne Viruses: Progress and Challenges (Michael P. Doyle; Editors: Marion P. G. Koopmans, Dean O. Cliver, and Albert Bosch) . https://archimer.ifremer.fr/doc/00066/17762/

Bosch Albert, Lees D., von Bonsdorff C.H., Pinto R.M., Crocci L., de Medici D., Le Guyader Soizick (2008). Detecting virus contamination in shellfish . In Improving seafood products for the consumer (Edited by T Børresen, Technical University of Denmark, Denmark) . https://archimer.ifremer.fr/doc/00066/17767/

Verhoef L, Depoortere E, Boxman I, Duizer E, Van Duynhoven Y, Harris J, Johnsen C, Kroneman A, Le Guyader Soizick, Lim W, Maunula L, Meldal H, Ratcliff R, Reuter G, Schreier E, Siebenga J, Vainio K, Varela C, Vennema H, Koopmans M (2008). Emergence of new norovirus variants on spring cruise ships and prediction of winter epidemics . Emerging Infectious Diseases , 14(2), 238-243 . Open Access version : https://archimer.ifremer.fr/doc/00000/3942/

Riou Philippe, Le Saux Jean-Claude, Dumas Franck, Le Guyader Soizick, Le Goff R., Maheux Frank, Lamort Laure, Pommepuy Monique (2008). The role of models in assessing the impact of sewage overflows on feacal water contamination . Journal of Shellfish Research Open Access version : https://archimer.ifremer.fr/doc/00066/17739/

(2008) Reducing microbial risk associated with shellfish in European countries . In Improving seafood products for the consumer (Woodhead Publishing) .

(2008) Detecting virus contamination in seafood . In Improving seafood products for the consumer (Woodhead Publishing) .

Da Silva A, Le Saux Jean-Claude, Parnaudeau Sylvain, Pommepuy Monique, Elimelech M, Le Guyader Soizick (2007). Evaluation of removal of noroviruses during wastewater treatment, using real-time reverse transcription-PCR: Different behaviors of genogroups I and II . Applied and environmental microbiology , 73(24), 7891-7897 . Publisher's official version : https://doi.org/10.1128/AEM.01428-07 , Open Access version : https://archimer.ifremer.fr/doc/00000/3571/

Riou Philippe, Le Saux Jean-Claude, Dumas Franck, Caprais Marie-Paule, Le Guyader Soizick, Pommepuy Monique (2007). Microbial impact of small tributaries on water and shellfish quality in shallow coastal areas . Water Research , 41(12), 2774-2786 . Publisher's official version : https://doi.org/10.1016/j.watres.2007.03.003 , Open Access version : https://archimer.ifremer.fr/doc/00000/2675/

Le Saux Jean-Claude, Hervio Heath Dominique, Pommepuy Monique, Le Guyader Soizick (2007). Toxi-infections alimentaires collectives à coquillages et expertise crise d'Arcachon - Année 2006 . https://archimer.ifremer.fr/doc/00306/41708/

Husman Ana Maria De Roda, Lodder-Verschoor Froukje, Van Den Berg Harold H. J. L., Le Guyader Soizick, Van Pelt Hilde, Van Der Poel Wim H. M., Rutjes Saskia A. (2007). Rapid virus detection procedure for molecular tracing of shellfish associated with disease outbreaks . Journal Of Food Protection , 70(4), 967-974 .

Le Guyader Soizick, Bon Fabienne, Demedici Dario, Parnaudeau Sylvain, Bertone Alessandra, Crudeli Silvia, Doyle Aoife, Zidane Mohamed, Suffredini Elisabetta, Kohli e Evelyne, Maddalo Francesco, Monini Marina, Gallay Anne, Pommepuy Monique, Pothier Pierre, Ruggeri Franco M. (2006). Detection of multiple noroviruses associated with an international gastroenteritis outbreak linked to oyster consumption . Journal of Clinical Microbiology , 44(11), 3878-3882 . Publisher's official version : https://doi.org/10.1128/JCM.01327-06 , Open Access version : https://archimer.ifremer.fr/doc/00000/2096/

Elamri D, Aouni M, Parnaudeau Sylvain, Le Guyader Soizick (2006). Detection of human enteric viruses in shellfish collected in Tunisia . Letters in Applied Microbiology , 43(4), 399-404 . Publisher's official version : https://doi.org/10.1111/j.1472-765X.2006.01978.x , Open Access version : https://archimer.ifremer.fr/doc/00000/1881/

Le Guyader Soizick, Loisy Fabienne, Atmar R, Hutson A, Estes M, Ruvoen-Clouet N, Pommepuy Monique, Le Pendu J (2006). Norwalk virus-specific binding to oyster digestive tissues . Emerging infectious diseases , 12(6), 931-936 . Open Access version : https://archimer.ifremer.fr/doc/00000/1542/

Pommepuy Monique, Hervio Heath Dominique, Caprais Marie-Paule, Gourmelon Michele, Le Saux Jean-Claude, Le Guyader Soizick (2006). Fecal contamination in coastal areas: An engineering approach . Oceans and Health: Pathogens in the Marine Environment (Book chapter) , 331-359 . Open Access version : https://archimer.ifremer.fr/doc/00000/1207/

Costantini V, Loisy Fabienne, Joens L, Le Guyader Soizick, Saif L (2006). Human and animal enteric caliciviruses in oysters from different coastal regions of the United States . Applied and environmental microbiology , 72(3), 1800-1809 . Publisher's official version : https://doi.org/10.1128/AEM.72.3.1800-1809.2006 , Open Access version : https://archimer.ifremer.fr/doc/00000/1235/

Loisy Fabienne, Atmar R, Le Saux Jean-Claude, Cohen J, Caprais Marie-Paule, Pommepuy Monique, Le Guyader Soizick (2005). Use of rotavirus virus-like particles as surrogates to evaluate virus persistence in shellfish . Applied and environmental microbiology , 71(10), 6049-6053 . Publisher's official version : https://doi.org/10.1128/AEM.71.10.6049-6053.2005 , Open Access version : https://archimer.ifremer.fr/doc/00000/1233/

Ambert Balay K, Bon F, Le Guyader Soizick, Pothier P, Kohli E (2005). Characterization of new recombinant noroviruses . Journal of Clinical Microbiology , 43(10), 5179-5186 . Publisher's official version : https://doi.org/10.1128/JCM.43.10.5179-5186.2005 , Open Access version : https://archimer.ifremer.fr/doc/00000/1234/

Bon Fabienne, Ambert Balay K, Giraudon H, Kaplon J, Le Guyader Soizick, Pommepuy Monique, Gallay A, Vaillant V, de Valk H, Chikhi Brachet R, Flahaut A, Pothier P, Kohli E (2005). Molecular epidemiology of caliciviruses detected in sporadic and outbreak cases of gastroenteritis in France from December 1998 to February 2004 . European Journal of Clinical Microbiology & Infectious Diseases , 43(9), 4659-4664 . Publisher's official version : https://doi.org/10.1128/JCM.43.9.4659-4664.2005 , Open Access version : https://archimer.ifremer.fr/doc/00000/723/

Hervio Heath Dominique, Zidane Mohamed, Le Saux Jean-Claude, Lozach Solen, Vaillant V., Le Guyader Soizick, Pommepuy Monique (2005). Toxi-infections alimentaires collectives liées à la consommation de moules contaminées par Vibrio parahaemolyticus : Enquête environnementale . Bulletin Epidémiologique , 1-2 . Open Access version : https://archimer.ifremer.fr/doc/00066/17737/

Pommepuy Monique, Riou Philippe, Le Saux Jean-Claude, Le Guyader Soizick (2005). Etude pour la reconquête de la qualité des eaux littorales et de la salubrité des coquillages dans le secteur de production conchylicole Cul de Loup - Lestre . IFOP n° 03/2210404/F .

Pommepuy Monique, Hervio Heath Dominique, Gourmelon Michele, Caprais Marie-Paule, Le Cann Pierre, Le Saux Jean-Claude, Le Guyader Soizick (2005). Emerging pathogens in coastal areas . CIESM workshop monographs , (26), 79-85 .

Loisy Fabienne, Atmar Rl, Guillon Patrice, Le Cann Pierre, Pommepuy Monique, Le Guyader Soizick (2005). Real-time RT-PCR for norovirus screening in shellfish . Journal Of Virological Methods , 123(1), 1-7 . https://doi.org/10.1016/j.jviromet.2004.08.023

Le Guyader Soizick, Mittelholzer C, Haugarreau Larissa, Hedlund Ko, Alsterlund R, Pommepuy Monique, Svensson L (2004). Detection of noroviruses in raspberries associated with a gastroenteritis outbreak . International Journal Of Food Microbiology , 97(2), 179-186 . https://doi.org/10.1016/j.ijfoodmicro.2004.04.018

Zidane Mohamed, Le Guyader Soizick, Pommepuy Monique (2004). Les Toxi-Infections Alimentaires Collectives (TIAC) virales associées à la consommation d'huîtres en France, hiver 2000-2001 . RST-DEL/04.04/MP-LNR . https://archimer.ifremer.fr/doc/00068/17941/

Loisy Fabienne, Atmar Robert L., Cohen Jean, Bosch Albert, Le Guyader Soizick (2004). Rotavirus VLP2/6: a new tool for tracking rotavirus in the marine environment . Research in Microbiology , 155(7), 575-578 . Publisher's official version : https://doi.org/10.1016/j.resmic.2004.04.002 , Open Access version : https://archimer.ifremer.fr/doc/00000/330/

Caballero S, Abad Fx, Loisy Fabienne, Le Guyader Soizick, Cohen J, Pinto Rm, Bosch A (2004). Rotavirus virus-like particles as surrogates in environmental persistence and inactivation studies . Applied And Environmental Microbiology , 70(7), 3904-3909 . https://doi.org/10.1128/AEM.70.7.3904-3909.2004

Ifremer (2004). Contamination et décontamination des mollusques bivalves. Journées thématiques Nantes 26 et 27 mai 2004, Résumé des présentations . https://archimer.ifremer.fr/doc/00139/25039/

Dubois Eric, Merle Ghislaine, Roquier Catherine, Trompette Aurélien, Le Guyader Soizick, Cruciere Catherine, Chomel Jean-Jacques (2004). Diversity of enterovirus sequences detected in oysters by RT-heminested PCR . International Journal of Food Microbiology , 92(1), 35-43 . Publisher's official version : https://doi.org/10.1016/j.ijfoodmicro.2003.06.001 , Open Access version : https://archimer.ifremer.fr/doc/00000/763/

Le Saux Jean-Claude, Derolez Valerie, Brest G., Le Guyader Soizick, Pommepuy Monique (2004). Developing a strategy to limit shellfish viral contamination . In Proceedings of the ICMSS 5th Int. Conf., Galway, 4–8 June 2004 (ICMMS) . https://archimer.ifremer.fr/doc/00066/17733/

Le Cann Pierre, Ranarijaona S, Monpoeho S, Le Guyader Soizick, Ferre V (2004). Quantification of human astroviruses in sewage using real-time RT-PCR . Research In Microbiology , 155(1), 11-15 . https://doi.org/10.1016/j.resmic.2003.09.013

Pommepuy Monique, Dumas Franck, Caprais Marie-Paule, Camus Patrick, Le Mennec Cecile, Parnaudeau Sylvain, Haugarreau Larissa, Sarrette B, Vilagines P, Pothier P, Kholi E, Le Guyader Soizick (2004). Sewage impact on shellfish microbial contamination . Water Science And Technology , 50(1), 117-124 .

Le Saux Jean-Claude, Pommepuy Monique, Caprais Marie-Paule, Le Mennec Cecile, Parnaudeau Sylvain, Le Guyader Francoise (2003). Evaluation et adaptation d'un système de purification des coquillages pour l'élimination des virus entériques . Convention OFIMER / CNC N°054-01C . https://archimer.ifremer.fr/doc/00044/15545/

Pommepuy Monique, Caprais Marie-Paule, Le Mennec Cecile, Parnaudeau Sylvain, Le Guyader Francoise, Camus Patrick, Dimeet Joel, Treguier Cathy, Bon Fabienne, Pothier Pierre, Kohli e Evelyne, Brachet R., Flahault A., Sarrette B., Vilagines P. (2002). Contamination virale et indicateurs du risque (Programme Liteau) . Contrat N° LT98036 . https://archimer.ifremer.fr/doc/00044/15549/

Pommepuy Monique, Caprais Marie-Paule, Le Saux Jean-Claude, Le Mennec Cecile, Parnaudeau Sylvain, Madec Yvon, Monier Martial, Brest Goulven, Le Guyader Francoise (2002). Evaluation of viral shellfish depuration in a semi-professional tank . 4th International Conference on Molluscan Shellfish Safety, pp. 485-499 . https://archimer.ifremer.fr/doc/00000/1208/

Le Guyader Soizick, Pommepuy Monique (2001). Tracking viruses in the environment . Biofutur , 2001(217), 52-55 .

Miossec Laurence, Le Guyader Soizick, Pelletier Dominique, Haugarreau Larissa, Caprais Marie-Paule, Pommepuy Monique (2001). Validity of Escherichia coli, enterovirus, and F-specific RNA bacteriophages as indicators of viral shellfish contamination . Journal Of Shellfish Research , 20(3), 1223-1227 . Open Access version : https://archimer.ifremer.fr/doc/00000/10006/

Schwab Kellogg, Neill Frederick, Le Guyader Soizick, Estes Mary, Atmar Robert (2001). Development of a reverse transcription-PCR-DNA enzyme immunoassay for detection of "Norwalk-like" viruses and hepatitis A virus in stool and shellfish . Applied and environmental microbiology , 67(2), 742-749 . Publisher's official version : https://doi.org/10.1128/AEM.67.2.742-749.2001 , Open Access version : https://archimer.ifremer.fr/doc/00000/1267/

Pinto Rm, Villena C, Le Guyader Soizick, Guix S, Caballero S, Pommepuy Monique, Bosch A (2001). Astrovirus detection in wastewater samples . Water Science And Technology , 43(12), 73-76 .

Bosch A, Sanchez G, Le Guyader Soizick, Vanaclocha H, Haugarreau Larissa, Pinto Rm (2001). Human enteric viruses in Coquina clams associated with a large hepatitis A outbreak . Water Science And Technology , 43(12), 61-65 .

Loisy Fabienne, Le Cann Pierre, Pommepuy Monique, Le Guyader Soizick (2000). An improved method for the detection of Norwalk-like caliciviruses in environmental samples . Letters In Applied Microbiology , 31(6), 411-415 .

Le Guyader Soizick, Haugarreau Larissa, Miossec Laurence, Dubois Eric, Pommepuy Monique (2000). Three-year study to assess human enteric viruses in shellfish . Applied and environmental microbiology , 66(8), 3241-3248 . Open Access version : https://archimer.ifremer.fr/doc/00507/61879/

Miossec Laurence, Le Guyader Francoise, Haugarreau Larissa, Pommepuy Monique (2000). Importance de la pluviométrie sur la contamination virale du milieu littoral lors de phénomènes épidémiques dans la population / Magnitude of rainfall on viral contamination of the marine environnement during gastroenteritis epidemics in human coastal population . Revue d'Epidémiologie et de Santé Publique , 48(suppl.2(1)), 2S62-2S71 . https://doi.org/RESP-08-2000-48-S2-0398-7620-101019-ART7

Alzieu Claude, Abarnou Alain, Bassoullet Philippe, Boutier Bernard, Chiffoleau Jean-Francois, Crenn Isabelle, Derrien Annick, Erard-Le Denn Evelyne, Gourmelon Michele, Guiliaud Jean-François, Silva Jacinto Ricardo, Le Cann Pierre, Le Guyader Françoise, Le Hir Pierre, L'Yavanc Jacky, Mauvais Jean-Louis, Menard Dominique, Michel Pierre, Monbet Yves, Pommepuy Monique, Quiniou Francoise (1999). Dragages et environnement marin Etat des connaissances . Ifremer. https://archimer.ifremer.fr/doc/00000/1040/

Miossec Laurence, Besseau Laetitia, Haugarreau Larissa, Le Guyader Francoise, Menard Dominique, Pommepuy Monique, Abadie Eric, Comps Marie-Annick, Guillou Jean-Louis, Le Bec Claude, Sauvagnargues Jean-Claude, Bon Fabienne, Jamot B., Kohli e Evelyne, Potier P., Daurat G., Guyonnet J.P. (1999). Contamination virale de l'environnement littoral . Contrat INSERM - 1996 - N°EN96C11 . https://archimer.ifremer.fr/doc/00044/15552/

Gantzer C, Menard Dominique, Lina B, Maul A, Le Guyader Soizick, Thouvenot D, Aymard M, Schwartzbrod L, Kopecka H (1999). Enterovirus genome detection in wastewater: multi centric evaluation of a commercial kit . Zentralblatt Fur Hygiene Und Umweltmedizin , 202(1), 29-39 . https://doi.org/10.1016/S0934-8859(99)80050-9

Miossec Laurence, Le Guyader Soizick, Haugarreau Larissa, Comps Marie-Annick, Pommepuy Monique (1998). Possible relation between a winter epidemic of acute gastroenteritis in France and viral contamination of shellfish . Journal Of Shellfish Research , 17(5), 1661-1664 . Open Access version : https://archimer.ifremer.fr/doc/00001/11257/

Gantzer Christophe, Dubois Éric, Crance Jean-Marc, Billaudel Sylviane, Kopecka Helena, Schwartzbrod Louis, Pommepuy Monique, Le Guyader Françoise (1998). Devenir des virus entériques en mer et influence des facteurs environnementaux . Oceanologica Acta , 21(6), 983-992 . Publisher's official version : https://doi.org/10.1016/S0399-1784(99)80020-6 , Open Access version : https://archimer.ifremer.fr/doc/00000/846/

Miossec Laurence, Le Guyader Francoise, Haeghebaert S., Gasnier Ph., Bellier J.Y., Vaillant V., Camus P., Pommepuy Monique, Abou-Saleh M.J., Clavelin Ph., Bobo J.P., Masson D., Desenclos J.C. (1998). Contamination virale de coquillages responsables d'une épidémie de gastro-entérites à Poitiers, mars 1997 . Bulletin Epidémiologique Hebdomadaire , (30), 129-130 . Open Access version : https://archimer.ifremer.fr/doc/00001/11244/

Pommepuy Monique, Le Guyader Soizick (1998). Molecular approaches to measuring microbial marine pollution . Current Opinion In Biotechnology , 9(3), 292-299 . https://doi.org/10.1016/S0958-1669(98)80062-1

Le Guyader Françoise, Miossec Laurence, Haugarreau Larissa, Dubois E, Kopecka H, Pommepuy Monique (1998). RT-PCR evaluation of viral contamination in five shellfish beds over a 21-month period . Water Science And Technology , 38(12), 45-50 . https://doi.org/10.1016/S0273-1223(98)00798-7

Dubois E, Le Guyader Soizick, Haugarreau Larissa, Kopecka H, Cormier M, Pommepuy Monique (1997). Molecular epidemiological survey of rotaviruses in sewage by reverse transcriptase seminested PCR and restriction fragment length polymorphism assay . Applied And Environmental Microbiology , 63(5), 1794-1800 . Open Access version : https://archimer.ifremer.fr/doc/00336/44720/

Le Guyader Soizick, Menard Dominique, Dubois E, Haugarreau Larissa, Kopecka H, Pommepuy Monique (1997). Use of an RT-PCR internal control to evaluate viral removal . Water Science And Technology , 35(11-12), 461-465 . https://doi.org/10.1016/S0273-1223(97)00304-1

Dubois Eric, Le Guyader Francoise, Kopecka Helena, Miossec Laurence, Pommepuy Monique (1997). Contamination de l'environnement littoral par les rotavirus du groupe A . Les Rotavirus. Comptes-rendus de la réunion sur les rotavirus en médecine humaine et vétérinaire, 10 octobre 1996, Val de Grâce, Paris. 1997. ISBN 978-2-84039-056-5 Éditeur Fondation Marcel Mérieux. pp.43-54 .

Beril C, Crance Jm, Le Guyader Soizick, Apaire-Marchais V, Leveque F, Albert M, Goraguer Ma, Schwartzbrod L, Billaudel S (1996). Study of viral and bacterial indicators in cockles and mussels . Marine Pollution Bulletin , 32(5), 404-409 . https://doi.org/10.1016/0025-326X(95)00217-B

Kopecka Helena, Le Guyader Soizick, Dubois Eric, Menard Dominique, Miossec Laurence, Pommepuy Monique (1996). Les virus entériques transmissibles par le milieu aquatique . Revue d'épidémiologie et de santé publique , 44(Suppl. 2), S48-S48 .

Crance Jm, Apaire Marchais V, Leveque F, Beril C, Le Guyader Soizick, Jouan A, Schwartzbrod L, Billaudel S (1995). Detection of hepatitis a virus in wild shellfish . Marine Pollution Bulletin , 30(6), 372-375 . https://doi.org/10.1016/0025-326X(94)00193-D

Le Guyader Soizick, Menard Dominique, Pommepuy Monique, Kopecka H (1995). Use of RT seminested PCR to assess viral contamination in Caribbean rivers (Martinique) . Water Science And Technology , 31(5-6), 391-394 . https://doi.org/10.1016/0273-1223(95)00298-2

Le Guyader Soizick, Dincher Ml, Menard Dominique, Schwartzbrod L, Pommepuy Monique (1994). Comparative study of the behaviour of poliovirus in sterile seawater using RT-PCR and cell culture . Marine Pollution Bulletin , 28(12), 723-726 . https://doi.org/10.1016/0025-326X(94)90330-1

Le Guyader Soizick, Dubois Eric, Menard Dominique, Pommepuy Monique (1994). Detection of hepatitis A virus, rotavirus, and enterovirus in naturally contaminated shellfish and sediment by reverse transcription-seminested PCR. Applied And Environmental Microbiology , 60(10), 3665-3671 .

Le Guyader Soizick, Dubois Eric, Menard Dominique (1994). Détection des virus entériques dans les stations d'épuration par PCR . https://archimer.ifremer.fr/doc/00041/15209/

Breton Marguerite, Caprais Marie-Paule, Derrien A., Douillet P, Dubois E, Dupray E, Gourmelon Michele, Guillerm Denise, Kempf Marc, Lazure P., Le Guyader Soizick, Le Menn Remi, Menard Dominique, Pommepuy Monique, Salomon Jean-Claude (1994). Etude de la qualité du milieu marin littoral en Martinique (Baie de Fort de France) . https://archimer.ifremer.fr/doc/00132/24303/

Pommepuy Monique, Guillaud Jean-Francois, Dupray Elisabeth, Derrien A, Le Guyader Soizick, Cormier M (1992). Enteric Bacteria Survival Factors . Water Science And Technology , 25(12), 93-103 . https://doi.org/http://www.iwaponline.com/wst/02512/wst025120093.htm

Le Guyader Soizick, Pommepuy Monique, Cormier Michel (1991). Implantation d'Escherichia coli en pilote expérimental et influence des compétitions de flore . Canadian Journal Of Microbiology , 37(2), 116-121 . https://doi.org/10.1139/m91-017

Le Hir Pierre, Guillaud Jean-Francois, Pommepuy Monique, Le Guyader Soizick, Salomon Jean-Claude (1989). Modélisation de transport dissous et particulaire dans l'estuaire de Morlaix. Application au devenir des bactéries entériques . DERO-89-21-EL .